CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM260956

Assay name A3-LLOYD-PHO_REP3

GSE experiment GSE10326: Transcriptome analysis of pho3

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
32.9 99.7 39.8 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA O.I. C.G. H.G.
32.1 99.7 12.7 At1g52810 841714 2-oxoglutarate-dependent dioxygenase-related F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
31.3 99.7 17.5 At2g32830 817844 PHT5 phosphate transporter O.I. C.G. H.G.
29.7 99.7 66.3 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
29.2 99.7 117.0 At5g48850 834943 ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1) homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools. O.I. C.G. H.G.
24.5 99.6 52.9 At3g08860 820034 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative F:pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity;P:unknown;C:mitochondrion;BOMFAPV O.I. C.G. H.G.
22.7 99.6 58.4 At3g49580 824120 LSU1 (RESPONSE TO LOW SULFUR 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
20.9 99.6 28.2 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
18.6 99.5 62.6 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
18.6 99.5 26.1 At2g21590 816697 APL4 Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described. O.I. C.G. H.G.
16.6 99.5 96.5 At3g47420 823896 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP O.I. C.G. H.G.
16.4 99.5 166.4 At1g61800 842477 GPT2 glucose6-Phosphate/phosphate transporter 2 O.I. C.G. H.G.
16.0 99.5 73.9 At3g51895 824353 SULTR3 Encodes a sulfate transporter. O.I. C.G. H.G.
15.4 99.5 36.9 At3g15780 820821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.0 99.4 10.6 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
14.6 99.4 17.3 At1g77990 844134 AST56 cDNA encoding a sulfate transporter. O.I. C.G. H.G.
14.3 99.4 13.0 At5g53030 835382 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.0 99.4 6.6 At4g26950 828802 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.7 99.4 23.7 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM O.I. C.G. H.G.
13.6 99.4 125.9 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
12.7 99.3 45.4 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter O.I. C.G. H.G.
12.5 99.3 51.4 At2g32530 817814 ATCSLB03 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
12.5 99.3 22.4 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
12.1 99.3 167.1 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
12.0 99.3 78.1 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.7 99.3 30.8 At4g23990 828499 ATCSLG3 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
11.5 99.3 147.7 At5g57345 835840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
11.5 99.3 40.8 At4g03960 825706 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM O.I. C.G. H.G.
11.4 99.3 21.9 At2g38640 818446 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
11.3 99.3 27.7 At3g05400 819704 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
11.3 99.3 24.9 At5g23870 832452 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOB O.I. C.G. H.G.
11.3 99.3 12.5 At3g46880 823841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
11.2 99.2 15.2 At3g52820 824448 PAP22 (PURPLE ACID PHOSPHATASE 22) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA O.I. C.G. H.G.
11.1 99.2 84.2 At1g68570 843186 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
11.1 99.2 43.3 At5g59080 836025 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P O.I. C.G. H.G.
10.9 99.2 47.6 At1g52880 841721 NAM (NO APICAL MERISTEM) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. O.I. C.G. H.G.
10.8 99.2 47.4 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
10.8 99.2 41.6 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
10.7 99.2 30.8 At4g39210 830076 APL3 Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. O.I. C.G. H.G.
10.5 99.2 38.3 At5g50800 835152 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
10.5 99.2 14.5 At5g35480 833512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.4 99.2 64.6 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
10.4 99.2 48.3 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase O.I. C.G. H.G.
10.1 99.2 33.7 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. O.I. C.G. H.G.
9.9 99.1 70.7 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. O.I. C.G. H.G.
9.9 99.1 59.7 At4g16490 827347 binding F:binding;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
9.9 99.1 48.8 At1g03310 839531 isoamylase, putative / starch debranching enzyme, putative Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. O.I. C.G. H.G.
9.9 99.1 19.0 At2g29370 817486 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
9.6 99.1 133.7 At2g29670 817517 binding F:binding;P:unknown;C:chloroplast;PBOAM O.I. C.G. H.G.
9.5 99.1 10.6 At3g47090 823862 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
9.4 99.1 44.9 At5g16990 831562 NADP-dependent oxidoreductase, putative molecular function has not been defined, was shown involved in oxidative stress tolerance. O.I. C.G. H.G.
9.4 99.1 37.3 At1g59700 842261 ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
9.4 99.1 13.3 At1g20490 838637 AMP-dependent synthetase and ligase family protein F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
9.3 99.1 19.5 At3g12520 820431 SULTR4 Encodes a sulfate transporter that in induced under sulfate limitation. O.I. C.G. H.G.
9.1 99.1 179.3 At4g37800 829936 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO O.I. C.G. H.G.
9.1 99.1 41.7 At1g67940 843122 ATNAP3 member of NAP subfamily O.I. C.G. H.G.
9.1 99.1 39.1 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.
9.1 99.1 22.6 At3g56080 824774 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
9.1 99.1 7.9 At2g47670 819380 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.0 99.1 61.4 At1g04350 839542 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
9.0 99.1 40.2 At1g71480 843489 nuclear transport factor 2 (NTF2) family protein F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO O.I. C.G. H.G.
9.0 99.1 36.6 At5g03230 831900 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
9.0 99.1 19.7 At2g04460 814986 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
8.9 99.0 106.0 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. O.I. C.G. H.G.
8.9 99.0 63.1 At5g05110 830393 cysteine protease inhibitor, putative / cystatin, putative F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
8.9 99.0 62.8 At2g15560 816049 - F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO O.I. C.G. H.G.
8.9 99.0 56.4 At2g23000 816831 scpl10 (serine carboxypeptidase-like 10) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
8.9 99.0 34.2 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. O.I. C.G. H.G.
8.8 99.0 46.5 At5g28020 832872 CYSD2 (CYSTEINE SYNTHASE D2) Encodes cysteine synthase CysD2. O.I. C.G. H.G.
8.8 99.0 41.3 At5g44000 834423 glutathione S-transferase C-terminal domain-containing protein F:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMA O.I. C.G. H.G.
8.8 99.0 39.8 At4g32770 829413 VTE1 (VITAMIN E DEFICIENT 1) Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading. O.I. C.G. H.G.
8.8 99.0 11.0 At4g03500 827731 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFPBVA O.I. C.G. H.G.
8.7 99.0 57.5 At2g37240 818301 - F:unknown;P:biological_process unknown;C:chloroplast;MPBOF O.I. C.G. H.G.
8.7 99.0 53.7 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV O.I. C.G. H.G.
8.7 99.0 48.3 At5g53870 835468 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA O.I. C.G. H.G.
8.7 99.0 42.1 At1g01500 839430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.6 99.0 56.3 At1g77930 844128 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
8.6 99.0 14.0 At4g39770 830135 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
32.9	99.7	39.8	At1g31820	840072	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA	O.I.	C.G.	H.G.
32.1	99.7	12.7	At1g52810	841714	2-oxoglutarate-dependent dioxygenase-related	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
31.3	99.7	17.5	At2g32830	817844	PHT5	phosphate transporter	O.I.	C.G.	H.G.
29.7	99.7	66.3	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
29.2	99.7	117.0	At5g48850	834943	ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)	homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.	O.I.	C.G.	H.G.
24.5	99.6	52.9	At3g08860	820034	alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative	F:pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity;P:unknown;C:mitochondrion;BOMFAPV	O.I.	C.G.	H.G.
22.7	99.6	58.4	At3g49580	824120	LSU1 (RESPONSE TO LOW SULFUR 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
20.9	99.6	28.2	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
18.6	99.5	62.6	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
18.6	99.5	26.1	At2g21590	816697	APL4	Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.	O.I.	C.G.	H.G.
16.6	99.5	96.5	At3g47420	823896	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP	O.I.	C.G.	H.G.
16.4	99.5	166.4	At1g61800	842477	GPT2	glucose6-Phosphate/phosphate transporter 2	O.I.	C.G.	H.G.
16.0	99.5	73.9	At3g51895	824353	SULTR3	Encodes a sulfate transporter.	O.I.	C.G.	H.G.
15.4	99.5	36.9	At3g15780	820821	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.0	99.4	10.6	At1g77960	844131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
14.6	99.4	17.3	At1g77990	844134	AST56	cDNA encoding a sulfate transporter.	O.I.	C.G.	H.G.
14.3	99.4	13.0	At5g53030	835382	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.0	99.4	6.6	At4g26950	828802	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.7	99.4	23.7	At3g28080	822432	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
13.6	99.4	125.9	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
12.7	99.3	45.4	At4g10770	826672	OPT7 (OLIGOPEPTIDE TRANSPORTER 7)	oligopeptide transporter	O.I.	C.G.	H.G.
12.5	99.3	51.4	At2g32530	817814	ATCSLB03	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
12.5	99.3	22.4	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
12.1	99.3	167.1	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
12.0	99.3	78.1	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.7	99.3	30.8	At4g23990	828499	ATCSLG3	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
11.5	99.3	147.7	At5g57345	835840	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
11.5	99.3	40.8	At4g03960	825706	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	O.I.	C.G.	H.G.
11.4	99.3	21.9	At2g38640	818446	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
11.3	99.3	27.7	At3g05400	819704	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
11.3	99.3	24.9	At5g23870	832452	pectinacetylesterase family protein	F:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOB	O.I.	C.G.	H.G.
11.3	99.3	12.5	At3g46880	823841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.2	99.2	15.2	At3g52820	824448	PAP22 (PURPLE ACID PHOSPHATASE 22)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA	O.I.	C.G.	H.G.
11.1	99.2	84.2	At1g68570	843186	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
11.1	99.2	43.3	At5g59080	836025	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P	O.I.	C.G.	H.G.
10.9	99.2	47.6	At1g52880	841721	NAM (NO APICAL MERISTEM)	Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.	O.I.	C.G.	H.G.
10.8	99.2	47.4	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
10.8	99.2	41.6	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
10.7	99.2	30.8	At4g39210	830076	APL3	Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.	O.I.	C.G.	H.G.
10.5	99.2	38.3	At5g50800	835152	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
10.5	99.2	14.5	At5g35480	833512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.4	99.2	64.6	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
10.4	99.2	48.3	At3g26280	822231	CYP71B4	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
10.1	99.2	33.7	At5g54250	835513	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	O.I.	C.G.	H.G.
9.9	99.1	70.7	At5g17220	831586	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.	O.I.	C.G.	H.G.
9.9	99.1	59.7	At4g16490	827347	binding	F:binding;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
9.9	99.1	48.8	At1g03310	839531	isoamylase, putative / starch debranching enzyme, putative	Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.	O.I.	C.G.	H.G.
9.9	99.1	19.0	At2g29370	817486	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
9.6	99.1	133.7	At2g29670	817517	binding	F:binding;P:unknown;C:chloroplast;PBOAM	O.I.	C.G.	H.G.
9.5	99.1	10.6	At3g47090	823862	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
9.4	99.1	44.9	At5g16990	831562	NADP-dependent oxidoreductase, putative	molecular function has not been defined, was shown involved in oxidative stress tolerance.	O.I.	C.G.	H.G.
9.4	99.1	37.3	At1g59700	842261	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
9.4	99.1	13.3	At1g20490	838637	AMP-dependent synthetase and ligase family protein	F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
9.3	99.1	19.5	At3g12520	820431	SULTR4	Encodes a sulfate transporter that in induced under sulfate limitation.	O.I.	C.G.	H.G.
9.1	99.1	179.3	At4g37800	829936	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO	O.I.	C.G.	H.G.
9.1	99.1	41.7	At1g67940	843122	ATNAP3	member of NAP subfamily	O.I.	C.G.	H.G.
9.1	99.1	39.1	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.
9.1	99.1	22.6	At3g56080	824774	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
9.1	99.1	7.9	At2g47670	819380	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.0	99.1	61.4	At1g04350	839542	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
9.0	99.1	40.2	At1g71480	843489	nuclear transport factor 2 (NTF2) family protein	F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO	O.I.	C.G.	H.G.
9.0	99.1	36.6	At5g03230	831900	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
9.0	99.1	19.7	At2g04460	814986	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
8.9	99.0	106.0	At5g04950	830377	NAS1 (NICOTIANAMINE SYNTHASE 1)	Encodes a nicotianamide synthase.	O.I.	C.G.	H.G.
8.9	99.0	63.1	At5g05110	830393	cysteine protease inhibitor, putative / cystatin, putative	F:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
8.9	99.0	62.8	At2g15560	816049	-	F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO	O.I.	C.G.	H.G.
8.9	99.0	56.4	At2g23000	816831	scpl10 (serine carboxypeptidase-like 10)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
8.9	99.0	34.2	At1g56650	842120	PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.	O.I.	C.G.	H.G.
8.8	99.0	46.5	At5g28020	832872	CYSD2 (CYSTEINE SYNTHASE D2)	Encodes cysteine synthase CysD2.	O.I.	C.G.	H.G.
8.8	99.0	41.3	At5g44000	834423	glutathione S-transferase C-terminal domain-containing protein	F:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMA	O.I.	C.G.	H.G.
8.8	99.0	39.8	At4g32770	829413	VTE1 (VITAMIN E DEFICIENT 1)	Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading.	O.I.	C.G.	H.G.
8.8	99.0	11.0	At4g03500	827731	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
8.7	99.0	57.5	At2g37240	818301	-	F:unknown;P:biological_process unknown;C:chloroplast;MPBOF	O.I.	C.G.	H.G.
8.7	99.0	53.7	At1g07010	837211	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV	O.I.	C.G.	H.G.
8.7	99.0	48.3	At5g53870	835468	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA	O.I.	C.G.	H.G.
8.7	99.0	42.1	At1g01500	839430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.6	99.0	56.3	At1g77930	844128	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
8.6	99.0	14.0	At4g39770	830135	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA	O.I.	C.G.	H.G.

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GSM ID	GSM260956
Assay name	A3-LLOYD-PHO_REP3
GSE experiment	GSE10326: Transcriptome analysis of pho3

Microarray experiments to specifically-expressed genes

GSM ID GSM260956 Assay name A3-LLOYD-PHO_REP3 GSE experiment GSE10326: Transcriptome analysis of pho3

GSM ID GSM260956

Assay name A3-LLOYD-PHO_REP3

GSE experiment GSE10326: Transcriptome analysis of pho3