CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM260883

Assay name Yap_A2-AMF_Rep2

GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
449.7 100.0 66.6 At5g50590 835128 AtHSD4 (hydroxysteroid dehydrogenase 4) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
248.5 100.0 17.6 At1g80320 844372 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
222.1 100.0 93.2 At3g31415 822906 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
205.7 100.0 46.1 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV O.I. C.G. H.G.
178.0 100.0 70.7 At1g52820 841715 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
171.8 100.0 39.7 At5g36110 833607 CYP716A1 member of CYP716A O.I. C.G. H.G.
146.4 99.9 143.4 At5g15180 831370 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
132.0 99.9 50.2 At2g42250 818826 CYP712A1 member of CYP712A O.I. C.G. H.G.
123.3 99.9 41.2 At5g36140 833611 CYP716A2 member of CYP716A O.I. C.G. H.G.
117.7 99.9 23.0 At3g29430 822604 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV O.I. C.G. H.G.
101.3 99.9 37.8 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
95.0 99.9 28.7 At1g66020 842915 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB O.I. C.G. H.G.
91.3 99.9 70.3 At4g23980 828498 ARF9 (AUXIN RESPONSE FACTOR 9) Encodes auxin response factor 9 (ARF9). O.I. C.G. H.G.
88.4 99.9 34.7 At1g68040 843132 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
85.5 99.9 152.4 At3g29410 822602 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO O.I. C.G. H.G.
75.7 99.9 46.9 At4g32950 829432 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
66.6 99.8 39.8 At2g16970 816200 MEE15 (maternal effect embryo arrest 15) F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMP O.I. C.G. H.G.
64.7 99.8 18.5 At2g22920 816823 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO O.I. C.G. H.G.
62.7 99.8 68.8 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM O.I. C.G. H.G.
62.2 99.8 25.6 At4g38340 829991 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POFB O.I. C.G. H.G.
60.5 99.8 21.2 At2g02610 814790 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
60.2 99.8 98.9 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
57.7 99.8 48.6 At3g45070 823642 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF O.I. C.G. H.G.
53.8 99.8 166.4 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
52.0 99.8 26.0 At1g77520 844088 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
51.2 99.8 12.9 At1g73310 843665 scpl4 (serine carboxypeptidase-like 4) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
50.4 99.8 40.4 At1g14480 838010 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
50.0 99.8 24.0 At5g14340 831284 AtMYB40 (myb domain protein 40) Member of the R2R3 factor gene family. O.I. C.G. H.G.
49.6 99.8 46.5 At1g53680 841805 ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
45.2 99.8 56.5 At3g12830 820465 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
43.5 99.8 56.6 At4g26220 828728 caffeoyl-CoA 3-O-methyltransferase, putative F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA O.I. C.G. H.G.
43.1 99.8 91.2 At2g41480 818746 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM O.I. C.G. H.G.
42.9 99.8 25.2 At4g15380 827204 CYP705A4 member of CYP705A O.I. C.G. H.G.
42.8 99.8 24.3 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
42.6 99.8 15.4 At1g53940 841833 GLIP2 Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance O.I. C.G. H.G.
41.8 99.8 39.0 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
41.6 99.8 77.9 At5g42500 834257 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
40.8 99.8 20.8 At4g20230 827770 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO O.I. C.G. H.G.
40.7 99.8 109.5 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
39.2 99.8 29.5 At5g60770 836198 ATNRT2.4 member of High affinity nitrate transporter family O.I. C.G. H.G.
38.6 99.8 42.0 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
37.5 99.7 77.9 At1g01640 839534 speckle-type POZ protein-related F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
37.2 99.7 44.3 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
36.8 99.7 95.6 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
36.3 99.7 14.5 At1g73780 843713 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
35.8 99.7 25.7 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
35.5 99.7 15.8 At3g63360 825511 defensin-related Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
34.6 99.7 40.5 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. C.G. H.G.
34.5 99.7 36.5 At5g38700 833860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
34.4 99.7 70.8 At3g14280 820648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
34.2 99.7 26.4 At5g16600 831522 MYB43 (myb domain protein 43) Encodes a putative transcription factor (MYB43). O.I. C.G. H.G.
34.0 99.7 88.7 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
33.3 99.7 41.3 At4g25250 828628 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
32.7 99.7 104.5 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.6 99.7 35.2 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
32.2 99.7 21.5 At4g14650 827115 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;OMFBPVA O.I. C.G. H.G.
31.6 99.7 70.5 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
31.5 99.7 40.1 At4g30420 829165 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM O.I. C.G. H.G.
31.4 99.7 74.8 At3g20015 821540 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. C.G. H.G.
30.4 99.7 136.5 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
30.2 99.7 26.2 At1g24430 839059 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF O.I. C.G. H.G.
30.1 99.7 20.4 At1g64700 842778 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
29.8 99.7 6.6 At3g26040 822201 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
29.5 99.7 90.0 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP O.I. C.G. H.G.
29.5 99.7 46.6 At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
29.5 99.7 31.9 At1g09090 837430 ATRBOHB (respiratory burst oxidase homolog B) F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA O.I. C.G. H.G.
29.3 99.7 88.4 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
29.1 99.7 29.0 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
29.0 99.7 81.9 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
29.0 99.7 66.1 At1g33800 840272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
28.6 99.7 41.5 At2g16980 816201 tetracycline transporter F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF O.I. C.G. H.G.
28.4 99.7 64.1 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.3 99.7 33.0 At5g51630 835237 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
27.8 99.7 29.3 At1g80690 844408 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
27.6 99.7 84.0 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
27.4 99.7 54.2 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF O.I. C.G. H.G.
27.4 99.7 41.5 At4g13860 827020 glycine-rich RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
27.2 99.7 22.6 At2g45550 819163 CYP76C4 member of CYP76C O.I. C.G. H.G.
26.9 99.7 53.8 At2g32990 817861 AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
26.4 99.7 5.9 At1g03010 839556 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM O.I. C.G. H.G.
26.3 99.7 30.8 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
26.0 99.7 15.4 At1g61930 842488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.4 99.6 21.0 At5g26310 832700 UGT72E3 UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides. O.I. C.G. H.G.
25.3 99.6 9.5 At1g24420 839058 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
25.0 99.6 50.2 At1g13420 837902 ST4B (SULFOTRANSFERASE 4B) Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment. O.I. C.G. H.G.
25.0 99.6 40.9 At3g59690 825138 IQD13 (IQ-domain 13) F:calmodulin binding;P:unknown;C:plasma membrane;POMVFB O.I. C.G. H.G.
24.8 99.6 13.4 At1g16490 838219 MYB58 (MYB DOMAIN PROTEIN 58) Member of the R2R3 factor gene family. O.I. C.G. H.G.
24.6 99.6 16.5 At1g50580 841480 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
24.4 99.6 17.5 At2g38600 818442 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
24.4 99.6 16.3 At2g39410 818526 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BPOMVA O.I. C.G. H.G.
24.3 99.6 14.5 At4g15270 827193 glucosyltransferase-related F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P O.I. C.G. H.G.
24.2 99.6 62.1 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. C.G. H.G.
23.9 99.6 24.6 At5g25640 832640 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BPOA O.I. C.G. H.G.
23.7 99.6 19.4 At1g66440 842962 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
23.5 99.6 121.9 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.5 99.6 29.4 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM O.I. C.G. H.G.
23.5 99.6 20.2 At5g42690 834278 unknown protein F:unknown;P:unknown;C:chloroplast;PBOMF O.I. C.G. H.G.
23.3 99.6 67.0 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family O.I. C.G. H.G.
23.3 99.6 13.2 At1g29180 839792 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
23.0 99.6 34.2 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
449.7	100.0	66.6	At5g50590	835128	AtHSD4 (hydroxysteroid dehydrogenase 4)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
248.5	100.0	17.6	At1g80320	844372	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
222.1	100.0	93.2	At3g31415	822906	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
205.7	100.0	46.1	At3g32040	822957	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV	O.I.	C.G.	H.G.
178.0	100.0	70.7	At1g52820	841715	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
171.8	100.0	39.7	At5g36110	833607	CYP716A1	member of CYP716A	O.I.	C.G.	H.G.
146.4	99.9	143.4	At5g15180	831370	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
132.0	99.9	50.2	At2g42250	818826	CYP712A1	member of CYP712A	O.I.	C.G.	H.G.
123.3	99.9	41.2	At5g36140	833611	CYP716A2	member of CYP716A	O.I.	C.G.	H.G.
117.7	99.9	23.0	At3g29430	822604	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV	O.I.	C.G.	H.G.
101.3	99.9	37.8	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
95.0	99.9	28.7	At1g66020	842915	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB	O.I.	C.G.	H.G.
91.3	99.9	70.3	At4g23980	828498	ARF9 (AUXIN RESPONSE FACTOR 9)	Encodes auxin response factor 9 (ARF9).	O.I.	C.G.	H.G.
88.4	99.9	34.7	At1g68040	843132	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
85.5	99.9	152.4	At3g29410	822602	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO	O.I.	C.G.	H.G.
75.7	99.9	46.9	At4g32950	829432	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
66.6	99.8	39.8	At2g16970	816200	MEE15 (maternal effect embryo arrest 15)	F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMP	O.I.	C.G.	H.G.
64.7	99.8	18.5	At2g22920	816823	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO	O.I.	C.G.	H.G.
62.7	99.8	68.8	At3g47210	823874	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;PM	O.I.	C.G.	H.G.
62.2	99.8	25.6	At4g38340	829991	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:unknown;POFB	O.I.	C.G.	H.G.
60.5	99.8	21.2	At2g02610	814790	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
60.2	99.8	98.9	At2g29750	817525	UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
57.7	99.8	48.6	At3g45070	823642	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	O.I.	C.G.	H.G.
53.8	99.8	166.4	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
52.0	99.8	26.0	At1g77520	844088	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
51.2	99.8	12.9	At1g73310	843665	scpl4 (serine carboxypeptidase-like 4)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
50.4	99.8	40.4	At1g14480	838010	protein binding	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
50.0	99.8	24.0	At5g14340	831284	AtMYB40 (myb domain protein 40)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
49.6	99.8	46.5	At1g53680	841805	ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
45.2	99.8	56.5	At3g12830	820465	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
43.5	99.8	56.6	At4g26220	828728	caffeoyl-CoA 3-O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	O.I.	C.G.	H.G.
43.1	99.8	91.2	At2g41480	818746	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM	O.I.	C.G.	H.G.
42.9	99.8	25.2	At4g15380	827204	CYP705A4	member of CYP705A	O.I.	C.G.	H.G.
42.8	99.8	24.3	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
42.6	99.8	15.4	At1g53940	841833	GLIP2	Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistance	O.I.	C.G.	H.G.
41.8	99.8	39.0	At3g27150	822334	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
41.6	99.8	77.9	At5g42500	834257	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
40.8	99.8	20.8	At4g20230	827770	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO	O.I.	C.G.	H.G.
40.7	99.8	109.5	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.2	99.8	29.5	At5g60770	836198	ATNRT2.4	member of High affinity nitrate transporter family	O.I.	C.G.	H.G.
38.6	99.8	42.0	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
37.5	99.7	77.9	At1g01640	839534	speckle-type POZ protein-related	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
37.2	99.7	44.3	At2g35270	818094	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
36.8	99.7	95.6	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
36.3	99.7	14.5	At1g73780	843713	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
35.8	99.7	25.7	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
35.5	99.7	15.8	At3g63360	825511	defensin-related	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
34.6	99.7	40.5	At3g13760	820585	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO	O.I.	C.G.	H.G.
34.5	99.7	36.5	At5g38700	833860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
34.4	99.7	70.8	At3g14280	820648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
34.2	99.7	26.4	At5g16600	831522	MYB43 (myb domain protein 43)	Encodes a putative transcription factor (MYB43).	O.I.	C.G.	H.G.
34.0	99.7	88.7	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
33.3	99.7	41.3	At4g25250	828628	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
32.7	99.7	104.5	At4g20390	827787	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.6	99.7	35.2	At4g28890	829010	protein binding / ubiquitin-protein ligase/ zinc ion binding	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
32.2	99.7	21.5	At4g14650	827115	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;OMFBPVA	O.I.	C.G.	H.G.
31.6	99.7	70.5	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.5	99.7	40.1	At4g30420	829165	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
31.4	99.7	74.8	At3g20015	821540	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
30.4	99.7	136.5	At1g64590	842767	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
30.2	99.7	26.2	At1g24430	839059	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
30.1	99.7	20.4	At1g64700	842778	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.8	99.7	6.6	At3g26040	822201	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
29.5	99.7	90.0	At5g45380	834574	sodium:solute symporter family protein	F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP	O.I.	C.G.	H.G.
29.5	99.7	46.6	At5g24410	832512	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
29.5	99.7	31.9	At1g09090	837430	ATRBOHB (respiratory burst oxidase homolog B)	F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBA	O.I.	C.G.	H.G.
29.3	99.7	88.4	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
29.1	99.7	29.0	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
29.0	99.7	81.9	At4g27654	828878	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
29.0	99.7	66.1	At1g33800	840272	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
28.6	99.7	41.5	At2g16980	816201	tetracycline transporter	F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF	O.I.	C.G.	H.G.
28.4	99.7	64.1	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.3	99.7	33.0	At5g51630	835237	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
27.8	99.7	29.3	At1g80690	844408	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
27.6	99.7	84.0	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
27.4	99.7	54.2	At4g08300	826384	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
27.4	99.7	41.5	At4g13860	827020	glycine-rich RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
27.2	99.7	22.6	At2g45550	819163	CYP76C4	member of CYP76C	O.I.	C.G.	H.G.
26.9	99.7	53.8	At2g32990	817861	AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
26.4	99.7	5.9	At1g03010	839556	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PM	O.I.	C.G.	H.G.
26.3	99.7	30.8	At1g49960	841419	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
26.0	99.7	15.4	At1g61930	842488	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.4	99.6	21.0	At5g26310	832700	UGT72E3	UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides.	O.I.	C.G.	H.G.
25.3	99.6	9.5	At1g24420	839058	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
25.0	99.6	50.2	At1g13420	837902	ST4B (SULFOTRANSFERASE 4B)	Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.	O.I.	C.G.	H.G.
25.0	99.6	40.9	At3g59690	825138	IQD13 (IQ-domain 13)	F:calmodulin binding;P:unknown;C:plasma membrane;POMVFB	O.I.	C.G.	H.G.
24.8	99.6	13.4	At1g16490	838219	MYB58 (MYB DOMAIN PROTEIN 58)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
24.6	99.6	16.5	At1g50580	841480	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
24.4	99.6	17.5	At2g38600	818442	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
24.4	99.6	16.3	At2g39410	818526	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BPOMVA	O.I.	C.G.	H.G.
24.3	99.6	14.5	At4g15270	827193	glucosyltransferase-related	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.2	99.6	62.1	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	C.G.	H.G.
23.9	99.6	24.6	At5g25640	832640	-	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BPOA	O.I.	C.G.	H.G.
23.7	99.6	19.4	At1g66440	842962	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
23.5	99.6	121.9	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.5	99.6	29.4	At3g49840	824146	unknown protein	F:unknown;P:unknown;C:endomembrane system;PBM	O.I.	C.G.	H.G.
23.5	99.6	20.2	At5g42690	834278	unknown protein	F:unknown;P:unknown;C:chloroplast;PBOMF	O.I.	C.G.	H.G.
23.3	99.6	67.0	At3g27170	822336	CLC-B (CHLORIDE CHANNEL B)	member of Anion channel protein family	O.I.	C.G.	H.G.
23.3	99.6	13.2	At1g29180	839792	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
23.0	99.6	34.2	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.

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GSM ID	GSM260883
Assay name	Yap_A2-AMF_Rep2
GSE experiment	GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

Microarray experiments to specifically-expressed genes

GSM ID GSM260883 Assay name Yap_A2-AMF_Rep2 GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

GSM ID GSM260883

Assay name Yap_A2-AMF_Rep2

GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways