Microarray experiments to specifically-expressed genes

GSM ID GSM260883
Assay name Yap_A2-AMF_Rep2
GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
449.7100.066.6At5g50590835128AtHSD4 (hydroxysteroid dehydrogenase 4)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
248.5100.017.6At1g80320844372oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
222.1100.093.2At3g31415822906terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;POO.I.C.G.H.G.
205.7100.046.1At3g32040822957geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAVO.I.C.G.H.G.
178.0100.070.7At1g528208417152-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
171.8100.039.7At5g36110833607CYP716A1member of CYP716AO.I.C.G.H.G.
146.499.9143.4At5g15180831370peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
132.099.950.2At2g42250818826CYP712A1member of CYP712AO.I.C.G.H.G.
123.399.941.2At5g36140833611CYP716A2member of CYP716AO.I.C.G.H.G.
117.799.923.0At3g29430822604geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAVO.I.C.G.H.G.
101.399.937.8At4g00670828034DNA bindingF:DNA binding;P:unknown;C:unknown;POFMO.I.C.G.H.G.
95.099.928.7At1g66020842915terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
91.399.970.3At4g23980828498ARF9 (AUXIN RESPONSE FACTOR 9)Encodes auxin response factor 9 (ARF9).O.I.C.G.H.G.
88.499.934.7At1g68040843132S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
85.599.9152.4At3g29410822602terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
75.799.946.9At4g32950829432protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
66.699.839.8At2g16970816200MEE15 (maternal effect embryo arrest 15)F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMPO.I.C.G.H.G.
64.799.818.5At2g22920816823serine carboxypeptidase S10 family proteinF:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBOO.I.C.G.H.G.
62.799.868.8At3g47210823874unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane;PMO.I.C.G.H.G.
62.299.825.6At4g38340829991RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POFBO.I.C.G.H.G.
60.599.821.2At2g02610814790DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
60.299.898.9At2g29750817525UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
57.799.848.6At3g45070823642sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFO.I.C.G.H.G.
53.899.8166.4At5g04120830290phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
52.099.826.0At1g77520844088O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
51.299.812.9At1g73310843665scpl4 (serine carboxypeptidase-like 4)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
50.499.840.4At1g14480838010protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
50.099.824.0At5g14340831284AtMYB40 (myb domain protein 40)Member of the R2R3 factor gene family.O.I.C.G.H.G.
49.699.846.5At1g53680841805ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
45.299.856.5At3g12830820465auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
43.599.856.6At4g26220828728caffeoyl-CoA 3-O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAO.I.C.G.H.G.
43.199.891.2At2g41480818746electron carrier/ heme binding / peroxidaseF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBMO.I.C.G.H.G.
42.999.825.2At4g15380827204CYP705A4member of CYP705AO.I.C.G.H.G.
42.899.824.3At1g78990844239transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
42.699.815.4At1g53940841833GLIP2Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistanceO.I.C.G.H.G.
41.899.839.0At3g27150822334kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
41.699.877.9At5g42500834257disease resistance-responsive family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.C.G.H.G.
40.899.820.8At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOO.I.C.G.H.G.
40.799.8109.5At3g25930822190universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
39.299.829.5At5g60770836198ATNRT2.4member of High affinity nitrate transporter familyO.I.C.G.H.G.
38.699.842.0At4g28650828983leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
37.599.777.9At1g01640839534speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
37.299.744.3At2g35270818094DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
36.899.795.6At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.C.G.H.G.
36.399.714.5At1g73780843713protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
35.899.725.7At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
35.599.715.8At3g63360825511defensin-relatedEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
34.699.740.5At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOO.I.C.G.H.G.
34.599.736.5At5g38700833860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
34.499.770.8At3g14280820648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
34.299.726.4At5g16600831522MYB43 (myb domain protein 43)Encodes a putative transcription factor (MYB43).O.I.C.G.H.G.
34.099.788.7At4g31910829321transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBOO.I.C.G.H.G.
33.399.741.3At4g25250828628invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
32.799.7104.5At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
32.699.735.2At4g28890829010protein binding / ubiquitin-protein ligase/ zinc ion bindingF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
32.299.721.5At4g14650827115unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;OMFBPVAO.I.C.G.H.G.
31.699.770.5At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
31.599.740.1At4g30420829165nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAMO.I.C.G.H.G.
31.499.774.8At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOO.I.C.G.H.G.
30.499.7136.5At1g64590842767short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
30.299.726.2At1g24430839059transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO.I.C.G.H.G.
30.199.720.4At1g64700842778unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
29.899.76.6At3g26040822201transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
29.599.790.0At5g45380834574sodium:solute symporter family proteinF:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAPO.I.C.G.H.G.
29.599.746.6At5g24410832512glucosamine/galactosamine-6-phosphate isomerase-relatedF:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
29.599.731.9At1g09090837430ATRBOHB (respiratory burst oxidase homolog B)F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBAO.I.C.G.H.G.
29.399.788.4At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
29.199.729.0At3g59370825106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
29.099.781.9At4g27654828878unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
29.099.766.1At1g33800840272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
28.699.741.5At2g16980816201tetracycline transporterF:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAFO.I.C.G.H.G.
28.499.764.1At5g50560835124unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.399.733.0At5g51630835237disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
27.899.729.3At1g80690844408unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
27.699.784.0At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
27.499.754.2At4g08300826384nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMFO.I.C.G.H.G.
27.499.741.5At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
27.299.722.6At2g45550819163CYP76C4member of CYP76CO.I.C.G.H.G.
26.999.753.8At2g32990817861AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
26.499.75.9At1g03010839556phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMO.I.C.G.H.G.
26.399.730.8At1g49960841419xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
26.099.715.4At1g61930842488unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.499.621.0At5g26310832700UGT72E3UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides.O.I.C.G.H.G.
25.399.69.5At1g24420839058transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
25.099.650.2At1g13420837902ST4B (SULFOTRANSFERASE 4B)Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.O.I.C.G.H.G.
25.099.640.9At3g59690825138IQD13 (IQ-domain 13)F:calmodulin binding;P:unknown;C:plasma membrane;POMVFBO.I.C.G.H.G.
24.899.613.4At1g16490838219MYB58 (MYB DOMAIN PROTEIN 58)Member of the R2R3 factor gene family.O.I.C.G.H.G.
24.699.616.5At1g50580841480glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
24.499.617.5At2g38600818442acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
24.499.616.3At2g39410818526hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BPOMVAO.I.C.G.H.G.
24.399.614.5At4g15270827193glucosyltransferase-relatedF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PO.I.C.G.H.G.
24.299.662.1At3g45710823713proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFAO.I.C.G.H.G.
23.999.624.6At5g25640832640-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BPOAO.I.C.G.H.G.
23.799.619.4At1g66440842962DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
23.599.6121.9At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.599.629.4At3g49840824146unknown proteinF:unknown;P:unknown;C:endomembrane system;PBMO.I.C.G.H.G.
23.599.620.2At5g42690834278unknown proteinF:unknown;P:unknown;C:chloroplast;PBOMFO.I.C.G.H.G.
23.399.667.0At3g27170822336CLC-B (CHLORIDE CHANNEL B)member of Anion channel protein familyO.I.C.G.H.G.
23.399.613.2At1g29180839792DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
23.099.634.2At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.



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