Microarray experiments to specifically-expressed genes

GSM ID GSM260882
Assay name Yap_A1-AMF_Rep2
GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
365.9100.060.1At5g50590835128AtHSD4 (hydroxysteroid dehydrogenase 4)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
261.6100.018.0At1g80320844372oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
193.2100.087.0At3g31415822906terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;POO.I.C.G.H.G.
184.7100.043.7At3g32040822957geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAVO.I.C.G.H.G.
155.499.946.2At5g36140833611CYP716A2member of CYP716AO.I.C.G.H.G.
154.499.9147.3At5g15180831370peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
141.999.936.1At5g36110833607CYP716A1member of CYP716AO.I.C.G.H.G.
138.199.962.3At1g528208417152-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
109.699.945.7At2g42250818826CYP712A1member of CYP712AO.I.C.G.H.G.
86.399.9153.2At3g29410822602terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
78.299.926.0At1g66020842915terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
77.899.964.9At4g23980828498ARF9 (AUXIN RESPONSE FACTOR 9)Encodes auxin response factor 9 (ARF9).O.I.C.G.H.G.
75.099.9110.4At2g29750817525UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
72.599.931.4At1g68040843132S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
68.399.944.5At4g32950829432protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
67.599.830.9At4g00670828034DNA bindingF:DNA binding;P:unknown;C:unknown;POFMO.I.C.G.H.G.
66.299.817.2At3g29430822604geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:unknown;P:isoprenoid biosynthetic process;C:unknown;OBFPMAVO.I.C.G.H.G.
59.599.8175.0At5g04120830290phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
58.299.817.6At2g22920816823serine carboxypeptidase S10 family proteinF:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBOO.I.C.G.H.G.
56.899.863.3At3g12830820465auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
54.499.864.1At3g47210823874unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane;PMO.I.C.G.H.G.
53.499.835.6At2g16970816200MEE15 (maternal effect embryo arrest 15)F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMPO.I.C.G.H.G.
52.999.826.2At1g77520844088O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
48.899.839.7At1g14480838010protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
47.599.823.4At5g14340831284AtMYB40 (myb domain protein 40)Member of the R2R3 factor gene family.O.I.C.G.H.G.
46.699.822.2At4g38340829991RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POFBO.I.C.G.H.G.
46.499.858.5At4g26220828728caffeoyl-CoA 3-O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAO.I.C.G.H.G.
45.099.815.8At1g53940841833GLIP2Encodes a lipase, has in vitro lipase activity with p-nitrophenyl acetate and p-nitrophenyl butyrate, gene expression induced by hormones, negatively regulates auxin signaling, involved in disease resistanceO.I.C.G.H.G.
44.799.885.1At1g01640839534speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
41.599.841.2At3g45070823642sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFO.I.C.G.H.G.
41.299.827.6At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
38.099.822.9At1g78990844239transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
37.099.740.2At1g53680841805ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
36.999.7150.4At1g64590842767short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
36.599.719.7At4g20230827770terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFOO.I.C.G.H.G.
35.999.799.3At5g45380834574sodium:solute symporter family proteinF:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAPO.I.C.G.H.G.
35.499.780.1At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFO.I.C.G.H.G.
35.499.728.0At5g60770836198ATNRT2.4member of High affinity nitrate transporter familyO.I.C.G.H.G.
34.799.7101.1At3g25930822190universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
34.599.740.5At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOO.I.C.G.H.G.
34.499.770.8At5g42500834257disease resistance-responsive family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.C.G.H.G.
33.399.794.3At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
33.199.721.4At1g64700842778unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
32.999.738.7At4g28650828983leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
32.899.779.5At2g41480818746electron carrier/ heme binding / peroxidaseF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBMO.I.C.G.H.G.
32.699.770.1At1g33800840272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
31.499.785.2At4g31910829321transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBOO.I.C.G.H.G.
30.799.757.4At2g32990817861AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
30.499.721.2At4g15380827204CYP705A4member of CYP705AO.I.C.G.H.G.
30.299.786.6At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.C.G.H.G.
30.099.724.7At5g16600831522MYB43 (myb domain protein 43)Encodes a putative transcription factor (MYB43).O.I.C.G.H.G.
29.899.720.7At4g14650827115unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;OMFBPVAO.I.C.G.H.G.
29.199.723.4At2g45550819163CYP76C4member of CYP76CO.I.C.G.H.G.
28.999.714.7At2g02610814790DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
28.599.738.8At2g35270818094DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
28.299.773.7At3g27170822336CLC-B (CHLORIDE CHANNEL B)member of Anion channel protein familyO.I.C.G.H.G.
28.099.732.7At4g28890829010protein binding / ubiquitin-protein ligase/ zinc ion bindingF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
27.699.784.0At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
27.499.763.1At3g14280820648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
27.099.715.3At1g01380838096ETC1 (ENHANCER OF TRY AND CPC 1)ETC1 is involved in trichome and root hair patterning in Arabidopsis.O.I.C.G.H.G.
26.199.713.5At3g63360825511defensin-relatedEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
26.099.763.9At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
25.899.7270.7At4g33720829514pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
25.699.736.3At4g25250828628invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
25.299.667.0At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOO.I.C.G.H.G.
25.299.630.3At3g27150822334kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
25.299.624.0At1g24430839059transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO.I.C.G.H.G.
25.099.635.4At4g14060827042major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
25.099.627.8At1g80690844408unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
24.799.6124.8At5g19890832111peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOBO.I.C.G.H.G.
24.699.612.0At1g73780843713protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
24.599.690.4At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
24.299.628.8At1g09090837430ATRBOHB (respiratory burst oxidase homolog B)F:in 7 functions;P:response to heat, defense response;C:integral to membrane, membrane;MPFOBAO.I.C.G.H.G.
24.099.621.3At1g55740842023AtSIP1 (Arabidopsis thaliana seed imbibition 1)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOO.I.C.G.H.G.
24.099.613.5At2g22000816736PROPEP6 (Elicitor peptide 6 precursor)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.699.673.6At3g17420821006GPK1serine/threonine protein kinase-like proteinO.I.C.G.H.G.
23.699.637.7At2g16980816201tetracycline transporterF:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAFO.I.C.G.H.G.
23.599.6136.7At4g26320828738AGP13 (arabinogalactan protein 13)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
23.499.6121.7At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.399.640.9At5g05160830398leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVAO.I.C.G.H.G.
23.399.620.1At5g26310832700UGT72E3UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides.O.I.C.G.H.G.
23.199.639.4At3g59690825138IQD13 (IQ-domain 13)F:calmodulin binding;P:unknown;C:plasma membrane;POMVFBO.I.C.G.H.G.
22.799.625.6At3g59370825106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
22.699.635.4At1g12940837852ATNRT2.5 (nitrate transporter2.5)member of High affinity nitrate transporter familyO.I.C.G.H.G.
22.599.637.6At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
22.499.657.0At5g50560835124unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.399.665.4At2g22510816784hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFAO.I.C.G.H.G.
22.399.641.2At5g64900836613PROPEP1Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.O.I.C.G.H.G.
22.299.613.9At4g15270827193glucosyltransferase-relatedF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PO.I.C.G.H.G.
22.199.6325.6At4g15390827205transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
21.999.68.5At1g73310843665scpl4 (serine carboxypeptidase-like 4)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
21.899.658.5At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
21.199.627.5At1g49960841419xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
20.999.626.6At1g08590837381CLAVATA1 receptor kinase (CLV1)similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888)O.I.C.G.H.G.
20.699.628.2At5g51630835237disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
20.699.614.1At5g06510830539NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
20.399.668.5At4g27654828878unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.099.6190.3At4g11310826733cysteine proteinase, putativecysteine proteinase precursor-like proteinO.I.C.G.H.G.
20.099.6125.0At1g15210838087PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPVO.I.C.G.H.G.
19.999.640.6At5g05790830464myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOO.I.C.G.H.G.



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