CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM260881

Assay name Yap_A2-AMF

GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
405.1 100.0 106.6 At1g52820 841715 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
197.5 100.0 15.7 At1g80320 844372 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
167.3 100.0 40.6 At5g50590 835128 AtHSD4 (hydroxysteroid dehydrogenase 4) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
157.5 99.9 54.8 At2g42250 818826 CYP712A1 member of CYP712A O.I. C.G. H.G.
138.2 99.9 73.6 At3g31415 822906 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
91.1 99.9 144.3 At4g17030 827411 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
85.7 99.9 34.2 At1g68040 843132 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
73.1 99.9 59.0 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. C.G. H.G.
68.5 99.9 62.2 At1g26240 839165 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
59.3 99.8 91.2 At5g15180 831370 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
57.4 99.8 22.3 At1g66020 842915 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB O.I. C.G. H.G.
50.5 99.8 117.2 At3g29410 822602 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO O.I. C.G. H.G.
48.1 99.8 96.1 At2g22510 816784 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA O.I. C.G. H.G.
44.1 99.8 114.0 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
43.2 99.8 12.1 At3g52970 824463 CYP76G1 member of CYP76G O.I. C.G. H.G.
42.4 99.8 18.3 At1g52800 841713 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
42.0 99.8 147.0 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
41.1 99.8 26.0 At1g13600 837921 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
40.2 99.8 20.4 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV O.I. C.G. H.G.
39.7 99.8 19.1 At5g36110 833607 CYP716A1 member of CYP716A O.I. C.G. H.G.
39.1 99.8 75.5 At5g42500 834257 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
39.1 99.8 26.9 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
38.0 99.8 328.3 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
38.0 99.8 53.6 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM O.I. C.G. H.G.
37.9 99.8 22.8 At5g36140 833611 CYP716A2 member of CYP716A O.I. C.G. H.G.
37.1 99.7 18.8 At1g67710 843096 ARR11 (RESPONSE REGULATOR 11) Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. O.I. C.G. H.G.
35.9 99.7 150.2 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB O.I. C.G. H.G.
35.8 99.7 19.4 At4g38340 829991 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POFB O.I. C.G. H.G.
35.4 99.7 19.4 At4g20230 827770 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO O.I. C.G. H.G.
34.7 99.7 21.9 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
34.3 99.7 111.4 At1g14730 838038 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF O.I. C.G. H.G.
34.3 99.7 25.8 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA O.I. C.G. H.G.
34.2 99.7 107.0 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
33.2 99.7 49.6 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
31.9 99.7 45.2 At1g60470 842342 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
31.7 99.7 20.3 At1g77520 844088 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
31.6 99.7 19.3 At5g28510 832944 BGLU24 (BETA GLUCOSIDASE 24) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
30.8 99.7 67.0 At3g14280 820648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.9 99.7 35.0 At3g45070 823642 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF O.I. C.G. H.G.
29.8 99.7 68.5 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
29.7 99.7 82.2 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.1 99.7 29.1 At4g32950 829432 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
28.8 99.7 69.9 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
28.8 99.7 26.2 At2g16970 816200 MEE15 (maternal effect embryo arrest 15) F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMP O.I. C.G. H.G.
28.4 99.7 149.0 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV O.I. C.G. H.G.
28.0 99.7 26.4 At1g34670 840371 AtMYB93 (myb domain protein 93) Member of the R2R3 factor gene family. O.I. C.G. H.G.
27.6 99.7 47.8 At5g05790 830464 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
27.5 99.7 69.9 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.3 99.7 149.5 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
27.3 99.7 33.5 At4g10310 826623 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots. O.I. C.G. H.G.
27.1 99.7 42.6 At3g59690 825138 IQD13 (IQ-domain 13) F:calmodulin binding;P:unknown;C:plasma membrane;POMVFB O.I. C.G. H.G.
26.4 99.7 11.8 At2g22920 816823 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO O.I. C.G. H.G.
26.3 99.7 52.9 At3g01260 821171 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
26.1 99.7 147.6 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
25.8 99.7 245.6 At5g05960 830481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
25.5 99.7 6.1 At3g26040 822201 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
25.4 99.6 61.5 At5g63560 836475 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
25.3 99.6 30.2 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
25.2 99.6 127.8 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA O.I. C.G. H.G.
25.0 99.6 57.1 At3g44540 823579 FAR4 (FATTY ACID REDUCTASE 4) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF O.I. C.G. H.G.
25.0 99.6 15.5 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
24.6 99.6 68.9 At2g41480 818746 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM O.I. C.G. H.G.
24.4 99.6 42.4 At4g26220 828728 caffeoyl-CoA 3-O-methyltransferase, putative F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA O.I. C.G. H.G.
24.3 99.6 230.2 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA O.I. C.G. H.G.
24.0 99.6 195.9 At1g15380 838107 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA O.I. C.G. H.G.
23.9 99.6 67.8 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family O.I. C.G. H.G.
23.7 99.6 16.5 At5g14340 831284 AtMYB40 (myb domain protein 40) Member of the R2R3 factor gene family. O.I. C.G. H.G.
23.4 99.6 18.2 At4g00670 828034 DNA binding F:DNA binding;P:unknown;C:unknown;POFM O.I. C.G. H.G.
23.2 99.6 103.5 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). O.I. C.G. H.G.
23.2 99.6 82.2 At3g16340 820881 PDR1 F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPV O.I. C.G. H.G.
23.1 99.6 32.4 At5g15830 831440 AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
23.1 99.6 17.1 At2g38600 818442 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
22.9 99.6 30.6 At1g64530 842761 RWP-RK domain-containing protein F:transcription factor activity;P:unknown;C:unknown;PMO O.I. C.G. H.G.
22.8 99.6 60.9 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
22.6 99.6 34.0 At4g30420 829165 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM O.I. C.G. H.G.
22.4 99.6 36.7 At2g16980 816201 tetracycline transporter F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF O.I. C.G. H.G.
22.3 99.6 326.8 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
22.1 99.6 31.0 At1g53680 841805 ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
21.8 99.6 22.3 At1g24430 839059 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF O.I. C.G. H.G.
21.8 99.6 17.6 At3g47980 823953 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP O.I. C.G. H.G.
21.7 99.6 25.5 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. C.G. H.G.
21.7 99.6 20.8 At5g06839 830575 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
21.6 99.6 286.9 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
21.6 99.6 17.9 At4g15380 827204 CYP705A4 member of CYP705A O.I. C.G. H.G.
21.5 99.6 71.5 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
21.1 99.6 27.7 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
21.0 99.6 93.4 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
20.8 99.6 73.0 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
20.7 99.6 37.5 At4g31875 829317 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.7 99.6 28.2 At5g51630 835237 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
20.4 99.6 39.4 At5g64900 836613 PROPEP1 Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response. O.I. C.G. H.G.
20.1 99.6 56.2 At1g72830 843614 NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
20.1 99.6 12.1 At2g31900 817748 XIF Encodes an novel myosin isoform. O.I. C.G. H.G.
20.0 99.6 46.2 At4g08300 826384 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAMF O.I. C.G. H.G.
20.0 99.6 19.2 At2g29380 817487 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
19.8 99.6 37.6 At1g31050 839991 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
19.8 99.6 35.4 At1g01340 838832 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) member of Cyclic nucleotide gated channel family O.I. C.G. H.G.
19.8 99.6 31.5 At4g14060 827042 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
19.6 99.6 63.7 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
19.6 99.6 17.7 At1g66440 842962 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
405.1	100.0	106.6	At1g52820	841715	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
197.5	100.0	15.7	At1g80320	844372	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
167.3	100.0	40.6	At5g50590	835128	AtHSD4 (hydroxysteroid dehydrogenase 4)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
157.5	99.9	54.8	At2g42250	818826	CYP712A1	member of CYP712A	O.I.	C.G.	H.G.
138.2	99.9	73.6	At3g31415	822906	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
91.1	99.9	144.3	At4g17030	827411	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
85.7	99.9	34.2	At1g68040	843132	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
73.1	99.9	59.0	At3g13760	820585	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO	O.I.	C.G.	H.G.
68.5	99.9	62.2	At1g26240	839165	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
59.3	99.8	91.2	At5g15180	831370	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
57.4	99.8	22.3	At1g66020	842915	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POB	O.I.	C.G.	H.G.
50.5	99.8	117.2	At3g29410	822602	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO	O.I.	C.G.	H.G.
48.1	99.8	96.1	At2g22510	816784	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA	O.I.	C.G.	H.G.
44.1	99.8	114.0	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.2	99.8	12.1	At3g52970	824463	CYP76G1	member of CYP76G	O.I.	C.G.	H.G.
42.4	99.8	18.3	At1g52800	841713	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
42.0	99.8	147.0	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
41.1	99.8	26.0	At1g13600	837921	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
40.2	99.8	20.4	At3g32040	822957	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV	O.I.	C.G.	H.G.
39.7	99.8	19.1	At5g36110	833607	CYP716A1	member of CYP716A	O.I.	C.G.	H.G.
39.1	99.8	75.5	At5g42500	834257	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
39.1	99.8	26.9	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
38.0	99.8	328.3	At4g33720	829514	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
38.0	99.8	53.6	At3g47210	823874	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;PM	O.I.	C.G.	H.G.
37.9	99.8	22.8	At5g36140	833611	CYP716A2	member of CYP716A	O.I.	C.G.	H.G.
37.1	99.7	18.8	At1g67710	843096	ARR11 (RESPONSE REGULATOR 11)	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.	O.I.	C.G.	H.G.
35.9	99.7	150.2	At5g19890	832111	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB	O.I.	C.G.	H.G.
35.8	99.7	19.4	At4g38340	829991	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:unknown;POFB	O.I.	C.G.	H.G.
35.4	99.7	19.4	At4g20230	827770	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO	O.I.	C.G.	H.G.
34.7	99.7	21.9	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
34.3	99.7	111.4	At1g14730	838038	-	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF	O.I.	C.G.	H.G.
34.3	99.7	25.8	At5g52790	835356	CBS domain-containing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
34.2	99.7	107.0	At4g20390	827787	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
33.2	99.7	49.6	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
31.9	99.7	45.2	At1g60470	842342	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
31.7	99.7	20.3	At1g77520	844088	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
31.6	99.7	19.3	At5g28510	832944	BGLU24 (BETA GLUCOSIDASE 24)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
30.8	99.7	67.0	At3g14280	820648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.9	99.7	35.0	At3g45070	823642	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	O.I.	C.G.	H.G.
29.8	99.7	68.5	At2g04800	815024	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.7	99.7	82.2	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.1	99.7	29.1	At4g32950	829432	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
28.8	99.7	69.9	At4g18340	827561	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
28.8	99.7	26.2	At2g16970	816200	MEE15 (maternal effect embryo arrest 15)	F:tetracycline transporter activity;P:embryonic development ending in seed dormancy;C:integral to membrane;BOMP	O.I.	C.G.	H.G.
28.4	99.7	149.0	At1g15210	838087	PDR7 (PLEIOTROPIC DRUG RESISTANCE 7)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV	O.I.	C.G.	H.G.
28.0	99.7	26.4	At1g34670	840371	AtMYB93 (myb domain protein 93)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
27.6	99.7	47.8	At5g05790	830464	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
27.5	99.7	69.9	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.3	99.7	149.5	At3g58550	825024	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
27.3	99.7	33.5	At4g10310	826623	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)	encodes a sodium transporter (HKT1) expressed in xylem parenchyma cells. Mutants over-accumulate sodium in shoot tissue and have increased sodium in the xylem sap and reduced sodium in phloem sap and roots.	O.I.	C.G.	H.G.
27.1	99.7	42.6	At3g59690	825138	IQD13 (IQ-domain 13)	F:calmodulin binding;P:unknown;C:plasma membrane;POMVFB	O.I.	C.G.	H.G.
26.4	99.7	11.8	At2g22920	816823	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO	O.I.	C.G.	H.G.
26.3	99.7	52.9	At3g01260	821171	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
26.1	99.7	147.6	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
25.8	99.7	245.6	At5g05960	830481	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
25.5	99.7	6.1	At3g26040	822201	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
25.4	99.6	61.5	At5g63560	836475	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
25.3	99.6	30.2	At1g49960	841419	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
25.2	99.6	127.8	At1g23720	838982	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA	O.I.	C.G.	H.G.
25.0	99.6	57.1	At3g44540	823579	FAR4 (FATTY ACID REDUCTASE 4)	F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBPOF	O.I.	C.G.	H.G.
25.0	99.6	15.5	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
24.6	99.6	68.9	At2g41480	818746	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM	O.I.	C.G.	H.G.
24.4	99.6	42.4	At4g26220	828728	caffeoyl-CoA 3-O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	O.I.	C.G.	H.G.
24.3	99.6	230.2	At4g38080	829964	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA	O.I.	C.G.	H.G.
24.0	99.6	195.9	At1g15380	838107	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA	O.I.	C.G.	H.G.
23.9	99.6	67.8	At3g27170	822336	CLC-B (CHLORIDE CHANNEL B)	member of Anion channel protein family	O.I.	C.G.	H.G.
23.7	99.6	16.5	At5g14340	831284	AtMYB40 (myb domain protein 40)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
23.4	99.6	18.2	At4g00670	828034	DNA binding	F:DNA binding;P:unknown;C:unknown;POFM	O.I.	C.G.	H.G.
23.2	99.6	103.5	At1g18970	838478	GLP4 (GERMIN-LIKE PROTEIN 4)	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	O.I.	C.G.	H.G.
23.2	99.6	82.2	At3g16340	820881	PDR1	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMFAPV	O.I.	C.G.	H.G.
23.1	99.6	32.4	At5g15830	831440	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
23.1	99.6	17.1	At2g38600	818442	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
22.9	99.6	30.6	At1g64530	842761	RWP-RK domain-containing protein	F:transcription factor activity;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
22.8	99.6	60.9	At2g29750	817525	UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
22.6	99.6	34.0	At4g30420	829165	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
22.4	99.6	36.7	At2g16980	816201	tetracycline transporter	F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF	O.I.	C.G.	H.G.
22.3	99.6	326.8	At4g15390	827205	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
22.1	99.6	31.0	At1g53680	841805	ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
21.8	99.6	22.3	At1g24430	839059	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
21.8	99.6	17.6	At3g47980	823953	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;BOFP	O.I.	C.G.	H.G.
21.7	99.6	25.5	At1g35250	840414	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA	O.I.	C.G.	H.G.
21.7	99.6	20.8	At5g06839	830575	bZIP family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
21.6	99.6	286.9	At3g53980	824565	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
21.6	99.6	17.9	At4g15380	827204	CYP705A4	member of CYP705A	O.I.	C.G.	H.G.
21.5	99.6	71.5	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
21.1	99.6	27.7	At3g27150	822334	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
21.0	99.6	93.4	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
20.8	99.6	73.0	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
20.7	99.6	37.5	At4g31875	829317	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.7	99.6	28.2	At5g51630	835237	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
20.4	99.6	39.4	At5g64900	836613	PROPEP1	Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.	O.I.	C.G.	H.G.
20.1	99.6	56.2	At1g72830	843614	NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
20.1	99.6	12.1	At2g31900	817748	XIF	Encodes an novel myosin isoform.	O.I.	C.G.	H.G.
20.0	99.6	46.2	At4g08300	826384	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
20.0	99.6	19.2	At2g29380	817487	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
19.8	99.6	37.6	At1g31050	839991	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
19.8	99.6	35.4	At1g01340	838832	ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.
19.8	99.6	31.5	At4g14060	827042	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.6	99.6	63.7	At5g09520	830811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
19.6	99.6	17.7	At1g66440	842962	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.

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GSM ID	GSM260881
Assay name	Yap_A2-AMF
GSE experiment	GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

Microarray experiments to specifically-expressed genes

GSM ID GSM260881 Assay name Yap_A2-AMF GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways

GSM ID GSM260881

Assay name Yap_A2-AMF

GSE experiment GSE10323: Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways