CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM25864

Assay name IAA Treated - 3

GSE experiment GSE1491: Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
71.6 99.9 46.9 At1g15580 838128 IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5) auxin induced protein O.I. C.G. H.G.
45.0 99.8 36.5 At3g58190 824988 LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) This gene contains two auxin-responsive element (AuxRE). O.I. C.G. H.G.
35.0 99.7 11.4 At3g03830 821123 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
31.6 99.7 11.7 At2g18010 816313 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
31.5 99.7 50.7 At4g34770 829629 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
31.4 99.7 239.2 At2g23170 816849 GH3.3 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. O.I. C.G. H.G.
29.6 99.7 25.7 At4g38850 830040 SAUR15 (SMALL AUXIN UPREGULATED 15) mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants. O.I. C.G. H.G.
24.3 99.6 89.4 At1g59500 842240 GH3.4 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. O.I. C.G. H.G.
24.2 99.6 121.2 At5g02760 831234 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV O.I. C.G. H.G.
22.0 99.6 19.3 At4g11460 826751 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
20.7 99.6 10.9 At3g03840 821121 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
18.0 99.5 16.3 At2g22810 816812 ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4) key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA). O.I. C.G. H.G.
14.5 99.4 7.1 At4g35200 829673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
14.3 99.4 79.5 At5g47370 834784 HAT2 homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis. O.I. C.G. H.G.
14.0 99.4 18.4 At1g29450 839821 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
13.4 99.4 101.6 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 O.I. C.G. H.G.
12.4 99.3 37.9 At4g14560 827103 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein. O.I. C.G. H.G.
11.2 99.2 271.0 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. C.G. H.G.
10.6 99.2 39.7 At1g29430 839819 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
10.4 99.2 22.9 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
10.2 99.2 45.6 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.6 99.1 59.6 At1g14210 837982 ribonuclease T2 family protein F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:response to salt stress;C:endomembrane system;PFMBOV O.I. C.G. H.G.
9.5 99.1 20.3 At1g18400 838421 BEE1 (BR Enhanced Expression 1) F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMO O.I. C.G. H.G.
9.4 99.1 28.2 At1g29500 839827 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;P O.I. C.G. H.G.
9.2 99.1 24.7 At5g57760 835884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.1 99.1 154.3 At5g65010 836625 ASN2 (ASPARAGINE SYNTHETASE 2) Encodes asparagine synthetase (ASN2). O.I. C.G. H.G.
9.1 99.1 24.4 At4g32280 829361 IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29) Auxin inducible protein. O.I. C.G. H.G.
9.0 99.1 11.3 At2g23180 816850 CYP96A1 member of CYP96A O.I. C.G. H.G.
8.9 99.0 100.2 At3g23030 821877 IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2) auxin inducible gene expressed in the nucleus O.I. C.G. H.G.
8.9 99.0 27.7 At1g73830 843719 BEE3 (BR ENHANCED EXPRESSION 3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO O.I. C.G. H.G.
8.7 99.0 50.6 At1g59960 842290 aldo/keto reductase, putative F:oxidoreductase activity;P:response to salt stress;C:unknown;BMOFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
71.6	99.9	46.9	At1g15580	838128	IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)	auxin induced protein	O.I.	C.G.	H.G.
45.0	99.8	36.5	At3g58190	824988	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	This gene contains two auxin-responsive element (AuxRE).	O.I.	C.G.	H.G.
35.0	99.7	11.4	At3g03830	821123	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
31.6	99.7	11.7	At2g18010	816313	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
31.5	99.7	50.7	At4g34770	829629	auxin-responsive family protein	F:unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
31.4	99.7	239.2	At2g23170	816849	GH3.3	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	O.I.	C.G.	H.G.
29.6	99.7	25.7	At4g38850	830040	SAUR15 (SMALL AUXIN UPREGULATED 15)	mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.	O.I.	C.G.	H.G.
24.3	99.6	89.4	At1g59500	842240	GH3.4	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.	O.I.	C.G.	H.G.
24.2	99.6	121.2	At5g02760	831234	protein phosphatase 2C family protein / PP2C family protein	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV	O.I.	C.G.	H.G.
22.0	99.6	19.3	At4g11460	826751	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
20.7	99.6	10.9	At3g03840	821121	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
18.0	99.5	16.3	At2g22810	816812	ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4)	key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA).	O.I.	C.G.	H.G.
14.5	99.4	7.1	At4g35200	829673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
14.3	99.4	79.5	At5g47370	834784	HAT2	homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.	O.I.	C.G.	H.G.
14.0	99.4	18.4	At1g29450	839821	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
13.4	99.4	101.6	At3g15540	820793	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	IAA induced protein 19	O.I.	C.G.	H.G.
12.4	99.3	37.9	At4g14560	827103	IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)	auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.	O.I.	C.G.	H.G.
11.2	99.2	271.0	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	C.G.	H.G.
10.6	99.2	39.7	At1g29430	839819	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
10.4	99.2	22.9	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
10.2	99.2	45.6	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.6	99.1	59.6	At1g14210	837982	ribonuclease T2 family protein	F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:response to salt stress;C:endomembrane system;PFMBOV	O.I.	C.G.	H.G.
9.5	99.1	20.3	At1g18400	838421	BEE1 (BR Enhanced Expression 1)	F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMO	O.I.	C.G.	H.G.
9.4	99.1	28.2	At1g29500	839827	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;P	O.I.	C.G.	H.G.
9.2	99.1	24.7	At5g57760	835884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.1	99.1	154.3	At5g65010	836625	ASN2 (ASPARAGINE SYNTHETASE 2)	Encodes asparagine synthetase (ASN2).	O.I.	C.G.	H.G.
9.1	99.1	24.4	At4g32280	829361	IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)	Auxin inducible protein.	O.I.	C.G.	H.G.
9.0	99.1	11.3	At2g23180	816850	CYP96A1	member of CYP96A	O.I.	C.G.	H.G.
8.9	99.0	100.2	At3g23030	821877	IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2)	auxin inducible gene expressed in the nucleus	O.I.	C.G.	H.G.
8.9	99.0	27.7	At1g73830	843719	BEE3 (BR ENHANCED EXPRESSION 3)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO	O.I.	C.G.	H.G.
8.7	99.0	50.6	At1g59960	842290	aldo/keto reductase, putative	F:oxidoreductase activity;P:response to salt stress;C:unknown;BMOFPA	O.I.	C.G.	H.G.

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GSM ID	GSM25864
Assay name	IAA Treated - 3
GSE experiment	GSE1491: Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM25864 Assay name IAA Treated - 3 GSE experiment GSE1491: Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis

GSM ID GSM25864

Assay name IAA Treated - 3

GSE experiment GSE1491: Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis