Microarray experiments to specifically-expressed genes

GSM ID GSM25863
Assay name IAA Treated - 2
GSE experiment GSE1491: Identification of Inhibitors of Auxin Transcriptional Activation via Chemical Genetics in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
193.9100.077.2At1g15580838128IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)auxin induced proteinO.I.C.G.H.G.
122.899.923.1At2g18010816313auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
111.299.957.4At3g58190824988LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)This gene contains two auxin-responsive element (AuxRE).O.I.C.G.H.G.
105.999.919.8At3g03830821123auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
78.599.941.9At4g38850830040SAUR15 (SMALL AUXIN UPREGULATED 15)mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.O.I.C.G.H.G.
69.799.932.1At2g22810816812ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4)key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA).O.I.C.G.H.G.
54.899.866.9At4g34770829629auxin-responsive family proteinF:unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
54.099.8133.3At1g59500842240GH3.4encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
43.699.8281.9At2g23170816849GH3.3encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
43.399.815.7At3g03840821121auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
39.199.811.7At4g35200829673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
38.999.830.7At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
37.699.7170.0At3g15540820793IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)IAA induced protein 19O.I.C.G.H.G.
34.299.7123.2At5g47370834784HAT2homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.O.I.C.G.H.G.
34.099.7143.8At5g02760831234protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAVO.I.C.G.H.G.
28.299.757.0At4g14560827103IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.O.I.C.G.H.G.
28.099.743.3At3g50340824196unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBFOO.I.C.G.H.G.
23.699.66.3At1g30100839889NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.O.I.C.G.H.G.
23.499.644.4At1g29500839827auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;PO.I.C.G.H.G.
22.299.635.3At5g52900835367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.999.619.2At4g11460826751protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
21.399.6142.0At4g27260828834WES1encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.O.I.C.G.H.G.
20.699.695.7At1g78100844146F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.299.629.6At4g36110829768auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
20.099.616.7At1g29460839822auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
19.999.638.8At3g59900825160ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.O.I.C.G.H.G.
19.399.617.8At2g39370818522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
18.699.516.6At3g42800823322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPO.I.C.G.H.G.
18.099.526.4At5g67060836841HEC1 (HECATE 1)F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFAO.I.C.G.H.G.
17.399.515.7At2g23180816850CYP96A1member of CYP96AO.I.C.G.H.G.
17.199.519.1At4g37295829884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.199.518.9At4g28640828982IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)Auxin induced gene, IAA11 (IAA11).O.I.C.G.H.G.
16.899.550.0At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
16.499.5141.6At5g54510835539DFL1 (DWARF IN LIGHT 1)Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).O.I.C.G.H.G.
16.299.541.9At5g50335835100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.599.517.2At2g14960815985GH3.1encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.O.I.C.G.H.G.
15.199.449.2At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.199.427.7At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
14.899.411.2At3g28420822472unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.699.4309.4At4g12550826868AIR1isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.O.I.C.G.H.G.
14.699.454.6At5g23840832449MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.499.449.4At5g43700834390ATAUX2-11 (AUXIN INDUCIBLE 2-11)Auxin inducible protein similar to transcription factors.O.I.C.G.H.G.
14.299.426.4At1g52830841717IAA6 (INDOLE-3-ACETIC ACID 6)An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.O.I.C.G.H.G.
14.099.430.2At4g32280829361IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)Auxin inducible protein.O.I.C.G.H.G.
13.599.45.7At1g29490839826auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
12.599.3265.9At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
12.399.3117.6At3g23030821877IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2)auxin inducible gene expressed in the nucleusO.I.C.G.H.G.
12.299.323.0At1g18400838421BEE1 (BR Enhanced Expression 1)F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMOO.I.C.G.H.G.
11.299.217.3At1g64405842749unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.999.25.2At4g37850829941basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
10.699.295.9At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
10.699.241.8At1g23080838916PIN7 (PIN-FORMED 7)Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.O.I.C.G.H.G.
10.699.210.7At1g65920842904regulator of chromosome condensation (RCC1) family protein / zinc finger protein-relatedF:zinc ion binding;P:unknown;C:plasma membrane, vacuole;MOBPFAVO.I.C.G.H.G.
10.399.226.1At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.199.255.3At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
10.199.212.6At2g26290817169ARSK1 (root-specific kinase 1)F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVAO.I.C.G.H.G.
9.899.1106.3At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
9.699.123.1At2g41820818781leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
9.699.121.4At5g59010836018protein kinase-relatedF:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVAO.I.C.G.H.G.
9.699.17.8At3g60550825226CYCP3F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
9.599.159.3At1g14210837982ribonuclease T2 family proteinF:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:response to salt stress;C:endomembrane system;PFMBOVO.I.C.G.H.G.
9.399.191.3At1g14960838061major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
9.099.120.6At1g29440839820-F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
8.999.035.7At1g29510839828SAUR68 (SMALL AUXIN UPREGULATED 68)F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
8.999.028.7At5g41400834142zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
8.999.018.1At2g26710817212BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.O.I.C.G.H.G.
8.799.021.3At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.



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