CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM258004

Assay name LMPC-derived phloem_3

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
882.7 100.0 32.3 At1g04330 839548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
723.4 100.0 467.1 At3g19550 821491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
621.8 100.0 173.5 At4g23496 828449 SP1L5 (SPIRAL1-LIKE5) Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. O.I. C.G. H.G.
391.6 100.0 310.7 At4g34600 829612 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
288.4 100.0 255.5 At1g06830 837195 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
268.1 100.0 54.1 At1g31490 840039 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PF O.I. C.G. H.G.
259.6 100.0 539.6 At1g67860 843113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
220.2 100.0 66.2 At5g17450 831611 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:unknown;PFBM O.I. C.G. H.G.
198.9 100.0 117.0 At1g01725 839271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
175.1 100.0 162.2 At5g50720 835144 ATHVA22E Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. O.I. C.G. H.G.
158.1 99.9 112.5 At5g04080 830287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
149.9 99.9 30.7 At2g15410 3768620 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
148.4 99.9 32.1 At3g12890 820472 ASML2 (ACTIVATOR OF SPOMIN::LUC2) Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes. O.I. C.G. H.G.
146.0 99.9 164.3 At3g62960 825471 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
126.1 99.9 39.1 At5g09990 830860 PROPEP5 (Elicitor peptide 5 precursor) F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
114.4 99.9 776.7 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
111.7 99.9 81.3 At1g73040 843635 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO O.I. C.G. H.G.
108.4 99.9 229.5 At2g16740 816175 UBC29 (ubiquitin-conjugating enzyme 29) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
98.7 99.9 2410.5 At3g15353 820771 MT3 (METALLOTHIONEIN 3) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage O.I. C.G. H.G.
96.6 99.9 21.7 At5g35540 833519 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
96.0 99.9 925.4 At1g67865 843114 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
92.4 99.9 99.8 At4g01897 828216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP O.I. C.G. H.G.
88.0 99.9 35.1 At3g46880 823841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
82.9 99.9 19.9 At2g40500 818645 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
80.5 99.9 34.5 At1g07300 837241 josephin protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
70.5 99.9 73.2 At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P O.I. C.G. H.G.
69.1 99.9 34.9 At3g06020 819773 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA O.I. C.G. H.G.
67.0 99.8 38.3 At2g20500 816571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
66.0 99.8 38.6 At3g61900 825363 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
64.8 99.8 20.2 At5g35690 833542 - F:unknown;P:unknown;C:cellular_component unknown;FOPMBV O.I. C.G. H.G.
61.4 99.8 801.0 At3g07230 819912 wound-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
60.8 99.8 155.9 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
59.4 99.8 18.6 At5g22910 832355 ATCHX9 member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
57.5 99.8 5.1 At5g50500 835118 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
51.9 99.8 31.0 At2g16360 816132 40S ribosomal protein S25 (RPS25A) F:structural constituent of ribosome;P:translation;C:in 6 components;MFPO O.I. C.G. H.G.
49.8 99.8 23.2 At4g21780 828266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.3 99.8 11.6 At5g46115 834653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
47.5 99.8 10.8 At5g38800 833871 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
47.4 99.8 6.9 At3g32160 822980 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
46.1 99.8 90.9 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA O.I. C.G. H.G.
45.3 99.8 253.4 At1g14450 838007 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF O.I. C.G. H.G.
44.5 99.8 37.6 At4g22160 828305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
44.1 99.8 567.6 At2g24940 817032 AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2) F:heme binding;P:unknown;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
41.6 99.8 103.0 At4g00880 827989 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
41.0 99.8 92.4 At5g49660 835028 leucine-rich repeat transmembrane protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
40.2 99.8 25.0 At1g68430 843172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
39.7 99.8 2240.9 At5g02380 831816 MT2B (METALLOTHIONEIN 2B) cysteine-rich protein with copper-binding activity O.I. C.G. H.G.
37.5 99.7 8.3 At5g35760 833555 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
36.6 99.7 33.9 At1g15960 838166 NRAMP6 member of Nramp2 family O.I. C.G. H.G.
36.5 99.7 114.1 At2g01090 814638 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMF O.I. C.G. H.G.
35.2 99.7 156.4 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
35.2 99.7 17.0 At5g41710 3771395 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
34.9 99.7 76.7 At4g09890 826579 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.9 99.7 10.3 At3g44910 823625 ATCHX12 member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
33.8 99.7 39.5 At3g25560 822143 NIK2 (NSP-INTERACTING KINASE 2) F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
33.4 99.7 53.0 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
33.3 99.7 9.1 At4g23760 828476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.4 99.7 8.7 At4g03830 825690 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA O.I. C.G. H.G.
31.9 99.7 45.6 At2g19460 816465 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.5 99.7 23.7 At5g38770 833868 AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.7 99.7 68.9 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
30.0 99.7 7.8 At5g49110 834970 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV O.I. C.G. H.G.
29.4 99.7 14.9 At5g06650 830553 GIS2 (GLABROUS INFLORESCENCE STEMS 2) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:trichome differentiation, response to gibberellin stimulus, response to cytokinin stimulus, regulation of transcription;C:intracellular;POM O.I. C.G. H.G.
28.6 99.7 16.5 At1g72860 843617 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
28.0 99.7 20.3 At1g68330 843162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
27.5 99.7 3.6 At2g04830 815027 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.3 99.7 21.2 At1g13600 837921 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
26.3 99.7 14.1 At5g55020 835593 MYB120 (MYB DOMAIN PROTEIN 120) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120). O.I. C.G. H.G.
26.1 99.7 34.5 At2g06390 815197 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
25.9 99.7 14.4 At2g37780 818355 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
25.7 99.7 39.0 At3g12590 820439 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;POM O.I. C.G. H.G.
25.5 99.7 991.2 At1g31812 840069 ACBP6 (acyl-CoA-binding protein 6) Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases. O.I. C.G. H.G.
25.5 99.7 69.1 At5g41560 834158 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MP O.I. C.G. H.G.
24.9 99.6 11.0 At5g50910 835163 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.1 99.6 253.1 At4g04830 825820 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
24.1 99.6 168.2 At5g03455 831832 CDC25 Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance. O.I. C.G. H.G.
23.9 99.6 25.4 At5g46240 834666 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5�0.6 μm diameter microdomains at the plasma membrane surface. O.I. C.G. H.G.
23.8 99.6 49.8 At2g32860 817847 BGLU33 (BETA GLUCOSIDASE 33) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
23.6 99.6 15.0 At3g25855 822180 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.2 99.6 13.5 At4g04000 3770309 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
23.1 99.6 11.3 At3g22050 821765 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.9 99.6 7.8 At3g32190 822986 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV O.I. C.G. H.G.
22.9 99.6 7.6 At5g50540 835122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.8 99.6 12.9 At5g56200 835719 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV O.I. C.G. H.G.
22.6 99.6 225.2 At1g15270 838094 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPO O.I. C.G. H.G.
22.5 99.6 3.0 At4g04420 3769951 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
22.4 99.6 44.7 At1g73640 843698 AtRABA6a (Arabidopsis Rab GTPase homolog A6a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. C.G. H.G.
22.4 99.6 8.9 At5g29100 3770882 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
22.1 99.6 32.6 At4g23493 828448 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
22.0 99.6 2.1 At1g32670 840161 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.6 99.6 46.8 At4g18400 827570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBF O.I. C.G. H.G.
21.4 99.6 22.1 At5g53740 835455 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
21.4 99.6 11.4 At2g04060 814940 beta-galactosidase, putative / lactase, putative F:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMO O.I. C.G. H.G.
21.3 99.6 26.5 At5g13470 831189 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.3 99.6 12.7 At2g35990 818172 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFMA O.I. C.G. H.G.
21.1 99.6 5.9 At5g51580 835232 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
21.0 99.6 23.5 At3g25620 822149 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV O.I. C.G. H.G.
20.9 99.6 12.4 At2g11390 3767808 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
20.9 99.6 6.7 At1g72760 843608 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
20.5 99.6 152.0 At3g09735 820131 DNA-binding S1FA family protein F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
882.7	100.0	32.3	At1g04330	839548	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
723.4	100.0	467.1	At3g19550	821491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
621.8	100.0	173.5	At4g23496	828449	SP1L5 (SPIRAL1-LIKE5)	Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.	O.I.	C.G.	H.G.
391.6	100.0	310.7	At4g34600	829612	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
288.4	100.0	255.5	At1g06830	837195	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
268.1	100.0	54.1	At1g31490	840039	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PF	O.I.	C.G.	H.G.
259.6	100.0	539.6	At1g67860	843113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
220.2	100.0	66.2	At5g17450	831611	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:unknown;PFBM	O.I.	C.G.	H.G.
198.9	100.0	117.0	At1g01725	839271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
175.1	100.0	162.2	At5g50720	835144	ATHVA22E	Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	O.I.	C.G.	H.G.
158.1	99.9	112.5	At5g04080	830287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
149.9	99.9	30.7	At2g15410	3768620	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
148.4	99.9	32.1	At3g12890	820472	ASML2 (ACTIVATOR OF SPOMIN::LUC2)	Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.	O.I.	C.G.	H.G.
146.0	99.9	164.3	At3g62960	825471	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
126.1	99.9	39.1	At5g09990	830860	PROPEP5 (Elicitor peptide 5 precursor)	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
114.4	99.9	776.7	At5g67600	836896	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
111.7	99.9	81.3	At1g73040	843635	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO	O.I.	C.G.	H.G.
108.4	99.9	229.5	At2g16740	816175	UBC29 (ubiquitin-conjugating enzyme 29)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
98.7	99.9	2410.5	At3g15353	820771	MT3 (METALLOTHIONEIN 3)	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	O.I.	C.G.	H.G.
96.6	99.9	21.7	At5g35540	833519	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
96.0	99.9	925.4	At1g67865	843114	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
92.4	99.9	99.8	At4g01897	828216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP	O.I.	C.G.	H.G.
88.0	99.9	35.1	At3g46880	823841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
82.9	99.9	19.9	At2g40500	818645	protein kinase family protein	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
80.5	99.9	34.5	At1g07300	837241	josephin protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
70.5	99.9	73.2	At3g20450	821590	-	F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P	O.I.	C.G.	H.G.
69.1	99.9	34.9	At3g06020	819773	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA	O.I.	C.G.	H.G.
67.0	99.8	38.3	At2g20500	816571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
66.0	99.8	38.6	At3g61900	825363	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
64.8	99.8	20.2	At5g35690	833542	-	F:unknown;P:unknown;C:cellular_component unknown;FOPMBV	O.I.	C.G.	H.G.
61.4	99.8	801.0	At3g07230	819912	wound-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
60.8	99.8	155.9	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
59.4	99.8	18.6	At5g22910	832355	ATCHX9	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
57.5	99.8	5.1	At5g50500	835118	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
51.9	99.8	31.0	At2g16360	816132	40S ribosomal protein S25 (RPS25A)	F:structural constituent of ribosome;P:translation;C:in 6 components;MFPO	O.I.	C.G.	H.G.
49.8	99.8	23.2	At4g21780	828266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.3	99.8	11.6	At5g46115	834653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.5	99.8	10.8	At5g38800	833871	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
47.4	99.8	6.9	At3g32160	822980	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.1	99.8	90.9	At3g54580	824623	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA	O.I.	C.G.	H.G.
45.3	99.8	253.4	At1g14450	838007	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF	O.I.	C.G.	H.G.
44.5	99.8	37.6	At4g22160	828305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
44.1	99.8	567.6	At2g24940	817032	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	F:heme binding;P:unknown;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
41.6	99.8	103.0	At4g00880	827989	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
41.0	99.8	92.4	At5g49660	835028	leucine-rich repeat transmembrane protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
40.2	99.8	25.0	At1g68430	843172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
39.7	99.8	2240.9	At5g02380	831816	MT2B (METALLOTHIONEIN 2B)	cysteine-rich protein with copper-binding activity	O.I.	C.G.	H.G.
37.5	99.7	8.3	At5g35760	833555	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
36.6	99.7	33.9	At1g15960	838166	NRAMP6	member of Nramp2 family	O.I.	C.G.	H.G.
36.5	99.7	114.1	At2g01090	814638	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMF	O.I.	C.G.	H.G.
35.2	99.7	156.4	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
35.2	99.7	17.0	At5g41710	3771395	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
34.9	99.7	76.7	At4g09890	826579	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.9	99.7	10.3	At3g44910	823625	ATCHX12	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
33.8	99.7	39.5	At3g25560	822143	NIK2 (NSP-INTERACTING KINASE 2)	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
33.4	99.7	53.0	At1g65860	842897	FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
33.3	99.7	9.1	At4g23760	828476	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.4	99.7	8.7	At4g03830	825690	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVA	O.I.	C.G.	H.G.
31.9	99.7	45.6	At2g19460	816465	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.5	99.7	23.7	At5g38770	833868	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.7	99.7	68.9	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
30.0	99.7	7.8	At5g49110	834970	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV	O.I.	C.G.	H.G.
29.4	99.7	14.9	At5g06650	830553	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:trichome differentiation, response to gibberellin stimulus, response to cytokinin stimulus, regulation of transcription;C:intracellular;POM	O.I.	C.G.	H.G.
28.6	99.7	16.5	At1g72860	843617	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
28.0	99.7	20.3	At1g68330	843162	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
27.5	99.7	3.6	At2g04830	815027	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.3	99.7	21.2	At1g13600	837921	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
26.3	99.7	14.1	At5g55020	835593	MYB120 (MYB DOMAIN PROTEIN 120)	Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120).	O.I.	C.G.	H.G.
26.1	99.7	34.5	At2g06390	815197	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
25.9	99.7	14.4	At2g37780	818355	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
25.7	99.7	39.0	At3g12590	820439	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;POM	O.I.	C.G.	H.G.
25.5	99.7	991.2	At1g31812	840069	ACBP6 (acyl-CoA-binding protein 6)	Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.	O.I.	C.G.	H.G.
25.5	99.7	69.1	At5g41560	834158	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MP	O.I.	C.G.	H.G.
24.9	99.6	11.0	At5g50910	835163	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.1	99.6	253.1	At4g04830	825820	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
24.1	99.6	168.2	At5g03455	831832	CDC25	Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.	O.I.	C.G.	H.G.
23.9	99.6	25.4	At5g46240	834666	KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)	Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5�0.6 μm diameter microdomains at the plasma membrane surface.	O.I.	C.G.	H.G.
23.8	99.6	49.8	At2g32860	817847	BGLU33 (BETA GLUCOSIDASE 33)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
23.6	99.6	15.0	At3g25855	822180	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.2	99.6	13.5	At4g04000	3770309	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
23.1	99.6	11.3	At3g22050	821765	receptor-like protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.9	99.6	7.8	At3g32190	822986	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV	O.I.	C.G.	H.G.
22.9	99.6	7.6	At5g50540	835122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.8	99.6	12.9	At5g56200	835719	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV	O.I.	C.G.	H.G.
22.6	99.6	225.2	At1g15270	838094	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPO	O.I.	C.G.	H.G.
22.5	99.6	3.0	At4g04420	3769951	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
22.4	99.6	44.7	At1g73640	843698	AtRABA6a (Arabidopsis Rab GTPase homolog A6a)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
22.4	99.6	8.9	At5g29100	3770882	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
22.1	99.6	32.6	At4g23493	828448	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
22.0	99.6	2.1	At1g32670	840161	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.6	99.6	46.8	At4g18400	827570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBF	O.I.	C.G.	H.G.
21.4	99.6	22.1	At5g53740	835455	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
21.4	99.6	11.4	At2g04060	814940	beta-galactosidase, putative / lactase, putative	F:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMO	O.I.	C.G.	H.G.
21.3	99.6	26.5	At5g13470	831189	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.3	99.6	12.7	At2g35990	818172	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFMA	O.I.	C.G.	H.G.
21.1	99.6	5.9	At5g51580	835232	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
21.0	99.6	23.5	At3g25620	822149	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV	O.I.	C.G.	H.G.
20.9	99.6	12.4	At2g11390	3767808	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
20.9	99.6	6.7	At1g72760	843608	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
20.5	99.6	152.0	At3g09735	820131	DNA-binding S1FA family protein	F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P	O.I.	C.G.	H.G.

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GSM ID	GSM258004
Assay name	LMPC-derived phloem_3
GSE experiment	GSE10247: Transcriptome analysis of the Arabidopsis phloem

Microarray experiments to specifically-expressed genes

GSM ID GSM258004 Assay name LMPC-derived phloem_3 GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

GSM ID GSM258004

Assay name LMPC-derived phloem_3

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem