Microarray experiments to specifically-expressed genes

GSM ID GSM258004
Assay name LMPC-derived phloem_3
GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
882.7100.032.3At1g04330839548unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
723.4100.0467.1At3g19550821491unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
621.8100.0173.5At4g23496828449SP1L5 (SPIRAL1-LIKE5)Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.O.I.C.G.H.G.
391.6100.0310.7At4g34600829612unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
288.4100.0255.5At1g06830837195glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
268.1100.054.1At1g31490840039transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PFO.I.C.G.H.G.
259.6100.0539.6At1g67860843113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
220.2100.066.2At5g17450831611heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:unknown;PFBMO.I.C.G.H.G.
198.9100.0117.0At1g01725839271unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
175.1100.0162.2At5g50720835144ATHVA22EEncodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.O.I.C.G.H.G.
158.199.9112.5At5g04080830287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.C.G.H.G.
149.999.930.7At2g154103768620transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
148.499.932.1At3g12890820472ASML2 (ACTIVATOR OF SPOMIN::LUC2)Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.O.I.C.G.H.G.
146.099.9164.3At3g62960825471glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
126.199.939.1At5g09990830860PROPEP5 (Elicitor peptide 5 precursor)F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
114.499.9776.7At5g67600836896unknown proteinF:unknown;P:unknown;C:plasma membrane;MOPFBVO.I.C.G.H.G.
111.799.981.3At1g73040843635jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
108.499.9229.5At2g16740816175UBC29 (ubiquitin-conjugating enzyme 29)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.C.G.H.G.
98.799.92410.5At3g15353820771MT3 (METALLOTHIONEIN 3)metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damageO.I.C.G.H.G.
96.699.921.7At5g35540833519unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
96.099.9925.4At1g67865843114unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
92.499.999.8At4g01897828216unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.C.G.H.G.
88.099.935.1At3g46880823841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
82.999.919.9At2g40500818645protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
80.599.934.5At1g07300837241josephin protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
70.599.973.2At3g20450821590-F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;PO.I.C.G.H.G.
69.199.934.9At3g06020819773unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBAO.I.C.G.H.G.
67.099.838.3At2g20500816571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
66.099.838.6At3g61900825363auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
64.899.820.2At5g35690833542-F:unknown;P:unknown;C:cellular_component unknown;FOPMBVO.I.C.G.H.G.
61.499.8801.0At3g07230819912wound-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
60.899.8155.9At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
59.499.818.6At5g22910832355ATCHX9member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
57.599.85.1At5g50500835118unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
51.999.831.0At2g1636081613240S ribosomal protein S25 (RPS25A)F:structural constituent of ribosome;P:translation;C:in 6 components;MFPOO.I.C.G.H.G.
49.899.823.2At4g21780828266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.399.811.6At5g46115834653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
47.599.810.8At5g38800833871AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
47.499.86.9At3g32160822980unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
46.199.890.9At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
45.399.8253.4At1g14450838007unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFO.I.C.G.H.G.
44.599.837.6At4g22160828305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
44.199.8567.6At2g24940817032AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)F:heme binding;P:unknown;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
41.699.8103.0At4g00880827989auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
41.099.892.4At5g49660835028leucine-rich repeat transmembrane protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
40.299.825.0At1g68430843172unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
39.799.82240.9At5g02380831816MT2B (METALLOTHIONEIN 2B)cysteine-rich protein with copper-binding activityO.I.C.G.H.G.
37.599.78.3At5g35760833555beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
36.699.733.9At1g15960838166NRAMP6member of Nramp2 familyO.I.C.G.H.G.
36.599.7114.1At2g01090814638ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMFO.I.C.G.H.G.
35.299.7156.4At5g24800832549BZIP9 (BASIC LEUCINE ZIPPER 9)Encodes bZIP protein BZO2H2.O.I.C.G.H.G.
35.299.717.0At5g417103771395transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
34.999.776.7At4g09890826579unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.999.710.3At3g44910823625ATCHX12member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
33.899.739.5At3g25560822143NIK2 (NSP-INTERACTING KINASE 2)F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
33.499.753.0At1g65860842897FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
33.399.79.1At4g23760828476unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.499.78.7At4g03830825690myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:nucleus;MOFPBVAO.I.C.G.H.G.
31.999.745.6At2g19460816465unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
31.599.723.7At5g38770833868AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.799.768.9At3g26960822314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
30.099.77.8At5g49110834970unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVO.I.C.G.H.G.
29.499.714.9At5g06650830553GIS2 (GLABROUS INFLORESCENCE STEMS 2)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:trichome differentiation, response to gibberellin stimulus, response to cytokinin stimulus, regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
28.699.716.5At1g72860843617disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
28.099.720.3At1g68330843162unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
27.599.73.6At2g04830815027F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.399.721.2At1g13600837921AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFBO.I.C.G.H.G.
26.399.714.1At5g55020835593MYB120 (MYB DOMAIN PROTEIN 120)Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120).O.I.C.G.H.G.
26.199.734.5At2g06390815197transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
25.999.714.4At2g37780818355DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
25.799.739.0At3g12590820439unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POMO.I.C.G.H.G.
25.599.7991.2At1g31812840069ACBP6 (acyl-CoA-binding protein 6)Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.O.I.C.G.H.G.
25.599.769.1At5g41560834158-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO.I.C.G.H.G.
24.999.611.0At5g50910835163unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.199.6253.1At4g04830825820methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
24.199.6168.2At5g03455831832CDC25Encodes a homolog of yeast cell cycle regulator CDC25. It has a sole catalytic domain and devoid of the N-terminal regulatory region found in the human CDC25 and is capable of reducing the mitotic cell length of transformed fission yeast. Non-plant CDC25 proteins have been shown to do this. However, the gene is more or less constant, regardless of whether the tissue examined contained proliferative cells. Also described as having arsenate reductase activity involved in arsenate resistance.O.I.C.G.H.G.
23.999.625.4At5g46240834666KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.50.6 μm diameter microdomains at the plasma membrane surface.O.I.C.G.H.G.
23.899.649.8At2g32860817847BGLU33 (BETA GLUCOSIDASE 33)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
23.699.615.0At3g25855822180unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.299.613.5At4g040003770309transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
23.199.611.3At3g22050821765receptor-like protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.999.67.8At3g32190822986-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAVO.I.C.G.H.G.
22.999.67.6At5g50540835122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.899.612.9At5g56200835719zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBVO.I.C.G.H.G.
22.699.6225.2At1g15270838094-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPOO.I.C.G.H.G.
22.599.63.0At4g044203769951transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
22.499.644.7At1g73640843698AtRABA6a (Arabidopsis Rab GTPase homolog A6a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.C.G.H.G.
22.499.68.9At5g291003770882transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
22.199.632.6At4g23493828448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.099.62.1At1g32670840161unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.699.646.8At4g18400827570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBFO.I.C.G.H.G.
21.499.622.1At5g53740835455unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
21.499.611.4At2g04060814940beta-galactosidase, putative / lactase, putativeF:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMOO.I.C.G.H.G.
21.399.626.5At5g13470831189unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.399.612.7At2g35990818172-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFMAO.I.C.G.H.G.
21.199.65.9At5g51580835232unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
21.099.623.5At3g25620822149ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPVO.I.C.G.H.G.
20.999.612.4At2g113903767808transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
20.999.66.7At1g72760843608protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
20.599.6152.0At3g09735820131DNA-binding S1FA family proteinF:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;PO.I.C.G.H.G.



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