Microarray experiments to specifically-expressed genes

GSM ID GSM258002
Assay name LMPC-derived phloem_1
GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1236.6100.0244.7At4g23496828449SP1L5 (SPIRAL1-LIKE5)Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.O.I.C.G.H.G.
1083.9100.0495.3At1g06830837195glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
740.0100.0472.5At3g19550821491unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
425.0100.022.4At1g04330839548unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
359.8100.0169.7At5g04080830287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.C.G.H.G.
340.8100.048.6At3g12890820472ASML2 (ACTIVATOR OF SPOMIN::LUC2)Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.O.I.C.G.H.G.
276.1100.0556.5At1g67860843113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
267.8100.054.0At1g31490840039transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PFO.I.C.G.H.G.
260.9100.0198.0At5g50720835144ATHVA22EEncodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.O.I.C.G.H.G.
148.899.957.1At2g20500816571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
136.099.9183.1At4g34600829612unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
120.399.941.0At3g46880823841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
114.199.9908.4At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
103.999.945.5At5g17450831611heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:unknown;PFBMO.I.C.G.H.G.
102.899.939.0At1g07300837241josephin protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
97.099.9196.9At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
92.399.924.1At2g154103768620transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
83.299.9201.1At2g16740816175UBC29 (ubiquitin-conjugating enzyme 29)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.C.G.H.G.
80.799.9120.3At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
77.499.9296.6At2g46650819277CB5-C (CYTOCHROME B5 ISOFORM C)member of Cytochromes b5O.I.C.G.H.G.
73.299.92075.7At3g15353820771MT3 (METALLOTHIONEIN 3)metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damageO.I.C.G.H.G.
71.699.947.7At4g22160828305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
71.199.9434.7At4g04830825820methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
68.699.968.7At1g01725839271unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
58.099.8103.5At3g62960825471glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
57.099.85.4At3g32180822985unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.999.816.2At2g40500818645protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
50.999.817.2At5g22910832355ATCHX9member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
46.899.885.0At3g26960822314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
44.399.858.1At3g20450821590-F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;PO.I.C.G.H.G.
44.399.837.2At1g15960838166NRAMP6member of Nramp2 familyO.I.C.G.H.G.
40.699.8117.6At5g65870836716ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
37.999.813.6At5g35540833519unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.899.728.8At3g61900825363auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
36.199.746.2At1g73040843635jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
35.199.7156.2At5g24800832549BZIP9 (BASIC LEUCINE ZIPPER 9)Encodes bZIP protein BZO2H2.O.I.C.G.H.G.
34.699.72092.4At5g02380831816MT2B (METALLOTHIONEIN 2B)cysteine-rich protein with copper-binding activityO.I.C.G.H.G.
33.299.7492.5At2g24940817032AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)F:heme binding;P:unknown;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
32.999.7542.0At1g67865843114unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.199.78.9At4g23760828476unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.999.723.3At3g06020819773unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBAO.I.C.G.H.G.
29.399.7553.7At3g07230819912wound-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.899.762.1At5g19875832109unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
27.699.71030.6At1g31812840069ACBP6 (acyl-CoA-binding protein 6)Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.O.I.C.G.H.G.
27.399.7770.6At5g38980833890unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.299.716.1At1g67710843096ARR11 (RESPONSE REGULATOR 11)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.O.I.C.G.H.G.
26.399.7193.0At1g14450838007unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFO.I.C.G.H.G.
26.199.723.6At4g37295829884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.099.79.0At3g44910823625ATCHX12member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
25.999.7369.3At5g67600836896unknown proteinF:unknown;P:unknown;C:plasma membrane;MOPFBVO.I.C.G.H.G.
25.799.75.1At3g32160822980unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.499.6238.7At1g15270838094-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPOO.I.C.G.H.G.
25.399.675.2At4g16400827334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.199.6567.5At5g40370834035glutaredoxin, putativeF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:plasma membrane, vacuole;BOMPFVO.I.C.G.H.G.
24.799.6248.3At5g09220830781AAP2 (AMINO ACID PERMEASE 2)member of AAAP familyO.I.C.G.H.G.
24.699.645.4At1g65860842897FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
24.699.640.0At2g19460816465unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.199.617.1At5g09990830860PROPEP5 (Elicitor peptide 5 precursor)F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.799.66.6At5g35760833555beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
22.199.642.0At5g14940831346proton-dependent oligopeptide transport (POT) family proteinF:amino acid transmembrane transporter activity, transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOFO.I.C.G.H.G.
21.999.6391.6At3g19710821508BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
21.799.69.8At2g34320817994nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PABOO.I.C.G.H.G.
21.599.611.6At5g35690833542-F:unknown;P:unknown;C:cellular_component unknown;FOPMBVO.I.C.G.H.G.
20.499.619.7At5g63905836511unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PBO.I.C.G.H.G.
20.499.613.0At5g417103771395transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
19.899.67.1At5g50540835122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.599.6335.8At4g13770827011CYP83A1 (CYTOCHROME P450 83A1)Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.O.I.C.G.H.G.
19.499.645.8At4g01897828216unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPO.I.C.G.H.G.
19.399.68.0At3g03660821196WOX11 (WUSCHEL related homeobox 11)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.O.I.C.G.H.G.
19.199.6261.0At1g01170839263ozone-responsive stress-related protein, putativeF:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;PO.I.C.G.H.G.
18.299.59.2At2g06020815156myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
18.199.512.0At4g040003770309transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
17.999.510.4At2g04060814940beta-galactosidase, putative / lactase, putativeF:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMOO.I.C.G.H.G.
17.899.586.9At2g21185816654unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.699.567.1At4g00880827989auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
17.599.516.5At1g68430843172unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
17.499.554.1At4g09890826579unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.499.513.4At5g26120832681ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPOO.I.C.G.H.G.
17.299.5100.9At3g06750819860hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBVO.I.C.G.H.G.
17.199.58.1At4g07500826197transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
17.099.541.5At4g18400827570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBFO.I.C.G.H.G.
16.999.514.9At4g09490826533RNase H domain-containing proteinF:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
16.999.512.8At2g155103768657transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
16.899.561.5At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
16.599.528.2At4g23493828448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.499.5872.1At5g42980834313ATTRX3 (THIOREDOXIN 3)encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.O.I.C.G.H.G.
16.399.53.7At1g31620840049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.099.5413.6At2g23090816839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
16.099.512.3At1g72860843617disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
15.799.58.7At5g58630835977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFO.I.C.G.H.G.
15.499.5425.0At1g01470837071LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.O.I.C.G.H.G.
15.199.4147.1At1g71950843526identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;PO.I.C.G.H.G.
15.099.419.0At1g77300844066EFS (EARLY FLOWERING IN SHORT DAYS)Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.O.I.C.G.H.G.
15.099.46.3At3g32190822986-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAVO.I.C.G.H.G.
14.999.43.7At2g22710816801transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
14.699.47.4At2g250303768249-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
14.599.440.2At1g47813841196unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.299.4159.9At5g04750830353F1F0-ATPase inhibitor protein, putativeF:ATPase inhibitor activity;P:unknown;C:unknown;PO.I.C.G.H.G.
13.999.46.7At1g68270843156AMP-dependent synthetase and ligase family proteinF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
13.899.438.5At5g11930831066glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBOO.I.C.G.H.G.



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