CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM258002

Assay name LMPC-derived phloem_1

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1236.6 100.0 244.7 At4g23496 828449 SP1L5 (SPIRAL1-LIKE5) Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. O.I. C.G. H.G.
1083.9 100.0 495.3 At1g06830 837195 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
740.0 100.0 472.5 At3g19550 821491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
425.0 100.0 22.4 At1g04330 839548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
359.8 100.0 169.7 At5g04080 830287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
340.8 100.0 48.6 At3g12890 820472 ASML2 (ACTIVATOR OF SPOMIN::LUC2) Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes. O.I. C.G. H.G.
276.1 100.0 556.5 At1g67860 843113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
267.8 100.0 54.0 At1g31490 840039 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PF O.I. C.G. H.G.
260.9 100.0 198.0 At5g50720 835144 ATHVA22E Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. O.I. C.G. H.G.
148.8 99.9 57.1 At2g20500 816571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
136.0 99.9 183.1 At4g34600 829612 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
120.3 99.9 41.0 At3g46880 823841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
114.1 99.9 908.4 At5g59310 836050 LTP4 (LIPID TRANSFER PROTEIN 4) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
103.9 99.9 45.5 At5g17450 831611 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:unknown;PFBM O.I. C.G. H.G.
102.8 99.9 39.0 At1g07300 837241 josephin protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
97.0 99.9 196.9 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
92.3 99.9 24.1 At2g15410 3768620 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
83.2 99.9 201.1 At2g16740 816175 UBC29 (ubiquitin-conjugating enzyme 29) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
80.7 99.9 120.3 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA O.I. C.G. H.G.
77.4 99.9 296.6 At2g46650 819277 CB5-C (CYTOCHROME B5 ISOFORM C) member of Cytochromes b5 O.I. C.G. H.G.
73.2 99.9 2075.7 At3g15353 820771 MT3 (METALLOTHIONEIN 3) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage O.I. C.G. H.G.
71.6 99.9 47.7 At4g22160 828305 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
71.1 99.9 434.7 At4g04830 825820 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
68.6 99.9 68.7 At1g01725 839271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
58.0 99.8 103.5 At3g62960 825471 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
57.0 99.8 5.4 At3g32180 822985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.9 99.8 16.2 At2g40500 818645 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
50.9 99.8 17.2 At5g22910 832355 ATCHX9 member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
46.8 99.8 85.0 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.3 99.8 58.1 At3g20450 821590 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P O.I. C.G. H.G.
44.3 99.8 37.2 At1g15960 838166 NRAMP6 member of Nramp2 family O.I. C.G. H.G.
40.6 99.8 117.6 At5g65870 836716 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
37.9 99.8 13.6 At5g35540 833519 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.8 99.7 28.8 At3g61900 825363 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
36.1 99.7 46.2 At1g73040 843635 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO O.I. C.G. H.G.
35.1 99.7 156.2 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
34.6 99.7 2092.4 At5g02380 831816 MT2B (METALLOTHIONEIN 2B) cysteine-rich protein with copper-binding activity O.I. C.G. H.G.
33.2 99.7 492.5 At2g24940 817032 AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2) F:heme binding;P:unknown;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
32.9 99.7 542.0 At1g67865 843114 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.1 99.7 8.9 At4g23760 828476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.9 99.7 23.3 At3g06020 819773 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA O.I. C.G. H.G.
29.3 99.7 553.7 At3g07230 819912 wound-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.8 99.7 62.1 At5g19875 832109 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
27.6 99.7 1030.6 At1g31812 840069 ACBP6 (acyl-CoA-binding protein 6) Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases. O.I. C.G. H.G.
27.3 99.7 770.6 At5g38980 833890 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.2 99.7 16.1 At1g67710 843096 ARR11 (RESPONSE REGULATOR 11) Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. O.I. C.G. H.G.
26.3 99.7 193.0 At1g14450 838007 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF O.I. C.G. H.G.
26.1 99.7 23.6 At4g37295 829884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.0 99.7 9.0 At3g44910 823625 ATCHX12 member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
25.9 99.7 369.3 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
25.7 99.7 5.1 At3g32160 822980 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.4 99.6 238.7 At1g15270 838094 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPO O.I. C.G. H.G.
25.3 99.6 75.2 At4g16400 827334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.1 99.6 567.5 At5g40370 834035 glutaredoxin, putative F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:plasma membrane, vacuole;BOMPFV O.I. C.G. H.G.
24.7 99.6 248.3 At5g09220 830781 AAP2 (AMINO ACID PERMEASE 2) member of AAAP family O.I. C.G. H.G.
24.6 99.6 45.4 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
24.6 99.6 40.0 At2g19460 816465 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.1 99.6 17.1 At5g09990 830860 PROPEP5 (Elicitor peptide 5 precursor) F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.7 99.6 6.6 At5g35760 833555 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
22.1 99.6 42.0 At5g14940 831346 proton-dependent oligopeptide transport (POT) family protein F:amino acid transmembrane transporter activity, transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF O.I. C.G. H.G.
21.9 99.6 391.6 At3g19710 821508 BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates. O.I. C.G. H.G.
21.7 99.6 9.8 At2g34320 817994 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PABO O.I. C.G. H.G.
21.5 99.6 11.6 At5g35690 833542 - F:unknown;P:unknown;C:cellular_component unknown;FOPMBV O.I. C.G. H.G.
20.4 99.6 19.7 At5g63905 836511 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PB O.I. C.G. H.G.
20.4 99.6 13.0 At5g41710 3771395 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
19.8 99.6 7.1 At5g50540 835122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.5 99.6 335.8 At4g13770 827011 CYP83A1 (CYTOCHROME P450 83A1) Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis. O.I. C.G. H.G.
19.4 99.6 45.8 At4g01897 828216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP O.I. C.G. H.G.
19.3 99.6 8.0 At3g03660 821196 WOX11 (WUSCHEL related homeobox 11) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. O.I. C.G. H.G.
19.1 99.6 261.0 At1g01170 839263 ozone-responsive stress-related protein, putative F:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;P O.I. C.G. H.G.
18.2 99.5 9.2 At2g06020 815156 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
18.1 99.5 12.0 At4g04000 3770309 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
17.9 99.5 10.4 At2g04060 814940 beta-galactosidase, putative / lactase, putative F:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMO O.I. C.G. H.G.
17.8 99.5 86.9 At2g21185 816654 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
17.6 99.5 67.1 At4g00880 827989 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
17.5 99.5 16.5 At1g68430 843172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
17.4 99.5 54.1 At4g09890 826579 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.4 99.5 13.4 At5g26120 832681 ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2) F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPO O.I. C.G. H.G.
17.2 99.5 100.9 At3g06750 819860 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBV O.I. C.G. H.G.
17.1 99.5 8.1 At4g07500 826197 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
17.0 99.5 41.5 At4g18400 827570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBF O.I. C.G. H.G.
16.9 99.5 14.9 At4g09490 826533 RNase H domain-containing protein F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
16.9 99.5 12.8 At2g15510 3768657 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.8 99.5 61.5 At1g62560 842553 FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
16.5 99.5 28.2 At4g23493 828448 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.4 99.5 872.1 At5g42980 834313 ATTRX3 (THIOREDOXIN 3) encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. O.I. C.G. H.G.
16.3 99.5 3.7 At1g31620 840049 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.0 99.5 413.6 At2g23090 816839 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
16.0 99.5 12.3 At1g72860 843617 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
15.7 99.5 8.7 At5g58630 835977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPF O.I. C.G. H.G.
15.4 99.5 425.0 At1g01470 837071 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. O.I. C.G. H.G.
15.1 99.4 147.1 At1g71950 843526 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;P O.I. C.G. H.G.
15.0 99.4 19.0 At1g77300 844066 EFS (EARLY FLOWERING IN SHORT DAYS) Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones. O.I. C.G. H.G.
15.0 99.4 6.3 At3g32190 822986 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV O.I. C.G. H.G.
14.9 99.4 3.7 At2g22710 816801 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.6 99.4 7.4 At2g25030 3768249 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.5 99.4 40.2 At1g47813 841196 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.2 99.4 159.9 At5g04750 830353 F1F0-ATPase inhibitor protein, putative F:ATPase inhibitor activity;P:unknown;C:unknown;P O.I. C.G. H.G.
13.9 99.4 6.7 At1g68270 843156 AMP-dependent synthetase and ligase family protein F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
13.8 99.4 38.5 At5g11930 831066 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1236.6	100.0	244.7	At4g23496	828449	SP1L5 (SPIRAL1-LIKE5)	Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.	O.I.	C.G.	H.G.
1083.9	100.0	495.3	At1g06830	837195	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
740.0	100.0	472.5	At3g19550	821491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
425.0	100.0	22.4	At1g04330	839548	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
359.8	100.0	169.7	At5g04080	830287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
340.8	100.0	48.6	At3g12890	820472	ASML2 (ACTIVATOR OF SPOMIN::LUC2)	Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.	O.I.	C.G.	H.G.
276.1	100.0	556.5	At1g67860	843113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
267.8	100.0	54.0	At1g31490	840039	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PF	O.I.	C.G.	H.G.
260.9	100.0	198.0	At5g50720	835144	ATHVA22E	Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	O.I.	C.G.	H.G.
148.8	99.9	57.1	At2g20500	816571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
136.0	99.9	183.1	At4g34600	829612	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
120.3	99.9	41.0	At3g46880	823841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
114.1	99.9	908.4	At5g59310	836050	LTP4 (LIPID TRANSFER PROTEIN 4)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
103.9	99.9	45.5	At5g17450	831611	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:unknown;PFBM	O.I.	C.G.	H.G.
102.8	99.9	39.0	At1g07300	837241	josephin protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
97.0	99.9	196.9	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
92.3	99.9	24.1	At2g15410	3768620	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
83.2	99.9	201.1	At2g16740	816175	UBC29 (ubiquitin-conjugating enzyme 29)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
80.7	99.9	120.3	At3g54580	824623	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA	O.I.	C.G.	H.G.
77.4	99.9	296.6	At2g46650	819277	CB5-C (CYTOCHROME B5 ISOFORM C)	member of Cytochromes b5	O.I.	C.G.	H.G.
73.2	99.9	2075.7	At3g15353	820771	MT3 (METALLOTHIONEIN 3)	metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage	O.I.	C.G.	H.G.
71.6	99.9	47.7	At4g22160	828305	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
71.1	99.9	434.7	At4g04830	825820	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
68.6	99.9	68.7	At1g01725	839271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
58.0	99.8	103.5	At3g62960	825471	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
57.0	99.8	5.4	At3g32180	822985	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.9	99.8	16.2	At2g40500	818645	protein kinase family protein	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
50.9	99.8	17.2	At5g22910	832355	ATCHX9	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
46.8	99.8	85.0	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.3	99.8	58.1	At3g20450	821590	-	F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;P	O.I.	C.G.	H.G.
44.3	99.8	37.2	At1g15960	838166	NRAMP6	member of Nramp2 family	O.I.	C.G.	H.G.
40.6	99.8	117.6	At5g65870	836716	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
37.9	99.8	13.6	At5g35540	833519	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.8	99.7	28.8	At3g61900	825363	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
36.1	99.7	46.2	At1g73040	843635	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO	O.I.	C.G.	H.G.
35.1	99.7	156.2	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
34.6	99.7	2092.4	At5g02380	831816	MT2B (METALLOTHIONEIN 2B)	cysteine-rich protein with copper-binding activity	O.I.	C.G.	H.G.
33.2	99.7	492.5	At2g24940	817032	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	F:heme binding;P:unknown;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
32.9	99.7	542.0	At1g67865	843114	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.1	99.7	8.9	At4g23760	828476	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.9	99.7	23.3	At3g06020	819773	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBA	O.I.	C.G.	H.G.
29.3	99.7	553.7	At3g07230	819912	wound-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.8	99.7	62.1	At5g19875	832109	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
27.6	99.7	1030.6	At1g31812	840069	ACBP6 (acyl-CoA-binding protein 6)	Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.	O.I.	C.G.	H.G.
27.3	99.7	770.6	At5g38980	833890	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.2	99.7	16.1	At1g67710	843096	ARR11 (RESPONSE REGULATOR 11)	Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.	O.I.	C.G.	H.G.
26.3	99.7	193.0	At1g14450	838007	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF	O.I.	C.G.	H.G.
26.1	99.7	23.6	At4g37295	829884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.0	99.7	9.0	At3g44910	823625	ATCHX12	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
25.9	99.7	369.3	At5g67600	836896	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
25.7	99.7	5.1	At3g32160	822980	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.4	99.6	238.7	At1g15270	838094	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPO	O.I.	C.G.	H.G.
25.3	99.6	75.2	At4g16400	827334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.1	99.6	567.5	At5g40370	834035	glutaredoxin, putative	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:plasma membrane, vacuole;BOMPFV	O.I.	C.G.	H.G.
24.7	99.6	248.3	At5g09220	830781	AAP2 (AMINO ACID PERMEASE 2)	member of AAAP family	O.I.	C.G.	H.G.
24.6	99.6	45.4	At1g65860	842897	FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
24.6	99.6	40.0	At2g19460	816465	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.1	99.6	17.1	At5g09990	830860	PROPEP5 (Elicitor peptide 5 precursor)	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.7	99.6	6.6	At5g35760	833555	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
22.1	99.6	42.0	At5g14940	831346	proton-dependent oligopeptide transport (POT) family protein	F:amino acid transmembrane transporter activity, transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF	O.I.	C.G.	H.G.
21.9	99.6	391.6	At3g19710	821508	BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)	Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.	O.I.	C.G.	H.G.
21.7	99.6	9.8	At2g34320	817994	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PABO	O.I.	C.G.	H.G.
21.5	99.6	11.6	At5g35690	833542	-	F:unknown;P:unknown;C:cellular_component unknown;FOPMBV	O.I.	C.G.	H.G.
20.4	99.6	19.7	At5g63905	836511	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
20.4	99.6	13.0	At5g41710	3771395	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
19.8	99.6	7.1	At5g50540	835122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.5	99.6	335.8	At4g13770	827011	CYP83A1 (CYTOCHROME P450 83A1)	Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.	O.I.	C.G.	H.G.
19.4	99.6	45.8	At4g01897	828216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBP	O.I.	C.G.	H.G.
19.3	99.6	8.0	At3g03660	821196	WOX11 (WUSCHEL related homeobox 11)	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.	O.I.	C.G.	H.G.
19.1	99.6	261.0	At1g01170	839263	ozone-responsive stress-related protein, putative	F:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;P	O.I.	C.G.	H.G.
18.2	99.5	9.2	At2g06020	815156	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
18.1	99.5	12.0	At4g04000	3770309	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
17.9	99.5	10.4	At2g04060	814940	beta-galactosidase, putative / lactase, putative	F:cation binding, beta-galactosidase activity, catalytic activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PMO	O.I.	C.G.	H.G.
17.8	99.5	86.9	At2g21185	816654	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
17.6	99.5	67.1	At4g00880	827989	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
17.5	99.5	16.5	At1g68430	843172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
17.4	99.5	54.1	At4g09890	826579	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.4	99.5	13.4	At5g26120	832681	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPO	O.I.	C.G.	H.G.
17.2	99.5	100.9	At3g06750	819860	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBV	O.I.	C.G.	H.G.
17.1	99.5	8.1	At4g07500	826197	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
17.0	99.5	41.5	At4g18400	827570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBF	O.I.	C.G.	H.G.
16.9	99.5	14.9	At4g09490	826533	RNase H domain-containing protein	F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
16.9	99.5	12.8	At2g15510	3768657	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.8	99.5	61.5	At1g62560	842553	FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
16.5	99.5	28.2	At4g23493	828448	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.4	99.5	872.1	At5g42980	834313	ATTRX3 (THIOREDOXIN 3)	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	O.I.	C.G.	H.G.
16.3	99.5	3.7	At1g31620	840049	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.0	99.5	413.6	At2g23090	816839	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
16.0	99.5	12.3	At1g72860	843617	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
15.7	99.5	8.7	At5g58630	835977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPF	O.I.	C.G.	H.G.
15.4	99.5	425.0	At1g01470	837071	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.	O.I.	C.G.	H.G.
15.1	99.4	147.1	At1g71950	843526	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:negative regulation of catalytic activity;C:plasma membrane;P	O.I.	C.G.	H.G.
15.0	99.4	19.0	At1g77300	844066	EFS (EARLY FLOWERING IN SHORT DAYS)	Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.	O.I.	C.G.	H.G.
15.0	99.4	6.3	At3g32190	822986	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV	O.I.	C.G.	H.G.
14.9	99.4	3.7	At2g22710	816801	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.6	99.4	7.4	At2g25030	3768249	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.5	99.4	40.2	At1g47813	841196	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.2	99.4	159.9	At5g04750	830353	F1F0-ATPase inhibitor protein, putative	F:ATPase inhibitor activity;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
13.9	99.4	6.7	At1g68270	843156	AMP-dependent synthetase and ligase family protein	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
13.8	99.4	38.5	At5g11930	831066	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBO	O.I.	C.G.	H.G.

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GSM ID	GSM258002
Assay name	LMPC-derived phloem_1
GSE experiment	GSE10247: Transcriptome analysis of the Arabidopsis phloem

Microarray experiments to specifically-expressed genes

GSM ID GSM258002 Assay name LMPC-derived phloem_1 GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

GSM ID GSM258002

Assay name LMPC-derived phloem_1

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem