CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM258000

Assay name Phloem exudate_2

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
57.4 99.8 35.4 At1g65000 842808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.3 99.8 3.2 At1g56530 842106 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
54.2 99.8 3.2 At1g32670 840161 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
52.3 99.8 7.0 At2g22710 816801 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
42.8 99.8 590.2 At5g66040 836734 STR16 (SULFURTRANSFERASE PROTEIN 16) F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
37.2 99.7 10.7 At4g17200 827431 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
36.6 99.7 333.0 At5g22580 832321 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF O.I. C.G. H.G.
36.6 99.7 12.6 At3g43930 823509 - F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
32.5 99.7 410.5 At5g14920 831344 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA O.I. C.G. H.G.
30.8 99.7 13.9 At5g35690 833542 - F:unknown;P:unknown;C:cellular_component unknown;FOPMBV O.I. C.G. H.G.
28.6 99.7 44.7 At5g64870 836610 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA O.I. C.G. H.G.
27.7 99.7 8.3 At5g19810 832101 proline-rich extensin-like family protein F:unknown;P:unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
26.0 99.7 7.7 At5g38370 833820 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;P O.I. C.G. H.G.
25.4 99.6 5.4 At2g13720 815856 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPV O.I. C.G. H.G.
24.8 99.6 4.8 At1g12490 837806 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
24.2 99.6 5.1 At4g03880 3770323 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
23.9 99.6 206.6 At1g70890 843427 MLP43 (MLP-LIKE PROTEIN 43) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;P O.I. C.G. H.G.
22.4 99.6 2.1 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
21.7 99.6 530.0 At3g16770 820929 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. O.I. C.G. H.G.
21.6 99.6 159.2 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
21.5 99.6 6.3 At3g31350 822885 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.3 99.6 1.9 At4g03990 825711 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
21.0 99.6 6.5 At5g02730 831820 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
21.0 99.6 6.4 At5g36810 833648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
20.8 99.6 10.2 At1g01690 839243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA O.I. C.G. H.G.
20.7 99.6 6.0 At3g17260 3768760 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
19.8 99.6 275.9 At2g23590 816891 MES8 (METHYL ESTERASE 8) Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
18.9 99.5 17.4 At1g18680 838449 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:N-terminal protein myristoylation;C:chloroplast;POB O.I. C.G. H.G.
18.5 99.5 7.7 At5g48390 834894 ATZIP4 Defective in meiotic chromosome segregation O.I. C.G. H.G.
18.4 99.5 4.1 At1g41900 840803 transposable element gene pseudogene of myosin heavy chain-related O.I. C.G. H.G.
18.1 99.5 37.2 At1g72920 843623 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity;P:response to wounding, defense response;C:intrinsic to membrane;PB O.I. C.G. H.G.
18.0 99.5 263.8 At3g57450 824912 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.0 99.5 12.4 At5g20560 832178 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
17.7 99.5 7.9 At4g00190 828218 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFOAM O.I. C.G. H.G.
17.6 99.5 1203.9 At3g16640 820916 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well. O.I. C.G. H.G.
17.6 99.5 126.4 At3g01690 821094 - F:unknown;P:unknown;C:unknown;OBMPFVA O.I. C.G. H.G.
17.6 99.5 24.4 At3g53410 824509 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF O.I. C.G. H.G.
17.5 99.5 9.2 At2g11010 815568 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPOBFA O.I. C.G. H.G.
17.3 99.5 67.2 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
17.3 99.5 3.5 At1g39350 840697 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
17.0 99.5 84.9 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
17.0 99.5 24.2 At5g44350 834461 ethylene-responsive nuclear protein -related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
16.2 99.5 4.7 At4g03480 827906 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
16.0 99.5 198.7 At5g22270 832287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.0 99.5 7.0 At4g25430 828646 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
16.0 99.5 6.3 At2g01240 814651 reticulon family protein (RTNLB15) F:unknown;P:biological_process unknown;C:endoplasmic reticulum;PMF O.I. C.G. H.G.
15.6 99.5 220.6 At5g44420 834469 PDF1.2 Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
15.4 99.5 8.0 At4g19580 827700 heat shock protein binding F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
15.2 99.4 8.5 At4g26040 828710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.2 99.4 6.2 At5g48710 834929 ubiquitin-related F:unknown;P:protein modification process;C:cellular_component unknown;MPFOV O.I. C.G. H.G.
15.1 99.4 7.5 At5g65080 836632 MAF5 (MADS AFFECTING FLOWERING 5) Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported. O.I. C.G. H.G.
15.1 99.4 3.1 At1g43880 840984 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
15.0 99.4 47.3 At1g47960 841214 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. O.I. C.G. H.G.
14.9 99.4 5.2 At4g13190 826933 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
14.8 99.4 368.9 At5g14780 831330 FDH (FORMATE DEHYDROGENASE) Encodes a NAD-dependent formate dehydrogenase. O.I. C.G. H.G.
14.8 99.4 5.7 At4g18000 827525 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.5 99.4 93.9 At3g60300 825201 RWD domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOF O.I. C.G. H.G.
14.4 99.4 5.6 At3g42240 823205 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.2 99.4 168.2 At5g40450 834043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV O.I. C.G. H.G.
14.2 99.4 5.8 At2g02830 3768540 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.0 99.4 968.2 At1g20620 838651 CAT3 (CATALASE 3) Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. O.I. C.G. H.G.
13.9 99.4 7.0 At5g32630 3771080 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
13.9 99.4 6.4 At1g24060 839018 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.8 99.4 24.6 At4g16870 3770172 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
13.5 99.4 1091.4 At2g25510 817089 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.5 99.4 2.7 At1g39430 840698 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
13.4 99.4 38.9 At1g07500 837264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.3 99.4 6.1 At1g52840 841718 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
13.2 99.4 3.3 At3g63230 825498 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.9 99.3 8.6 At3g45990 823742 actin-depolymerizing factor, putative F:actin binding;P:biological_process unknown;C:intracellular;MPOF O.I. C.G. H.G.
12.8 99.3 5.9 At2g34210 817982 structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV O.I. C.G. H.G.
12.8 99.3 2.8 At2g23920 816924 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
12.7 99.3 6.6 At4g38990 830054 AtGH9B16 (Arabidopsis thaliana glycosyl hydrolase 9B16) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system O.I. C.G. H.G.
12.7 99.3 5.8 At4g15060 827169 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBF O.I. C.G. H.G.
12.7 99.3 2.0 At1g26860 837037 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.5 99.3 6.4 At5g41170 834119 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
12.2 99.3 7.0 At2g03580 814887 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.1 99.3 2.5 At3g42350 823228 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.0 99.3 14.8 At5g03210 831903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.0 99.3 10.2 At3g20475 821593 MSH5 (MUTS-HOMOLOGUE 5) Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. O.I. C.G. H.G.
12.0 99.3 8.3 At2g10340 815493 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.0 99.3 2.9 At2g10630 3767858 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.7 99.3 977.5 At4g21960 828285 PRXR1 Encodes AT4g21960 (AT4g21960/T8O5_170). O.I. C.G. H.G.
11.7 99.3 4.7 At1g31000 839986 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.6 99.3 7.8 At3g48830 824044 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein F:polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity;P:RNA processing;C:endomembrane system;BOMFPVA O.I. C.G. H.G.
11.5 99.3 5.1 At4g18420 827572 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.5 99.3 3.7 At1g60320 842327 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB O.I. C.G. H.G.
11.5 99.3 1.8 At2g14300 3768068 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.4 99.3 15.9 At1g34270 840327 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOF O.I. C.G. H.G.
11.4 99.3 11.8 At3g48550 824014 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.3 99.3 9.1 At4g11950 826802 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.3 99.3 9.1 At5g30500 833137 galactinol synthase, putative F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
11.3 99.3 6.3 At2g12910 3768701 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.2 99.2 525.7 At1g19550 838542 dehydroascorbate reductase, putative F:glutathione dehydrogenase (ascorbate) activity;P:unknown;C:unknown;MPBOF O.I. C.G. H.G.
11.1 99.2 5.8 At3g20400 821585 EMB2743 (EMBRYO DEFECTIVE 2743) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
11.0 99.2 3.9 At3g14480 820671 glycine/proline-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
10.9 99.2 192.3 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
10.9 99.2 9.4 At1g52990 841732 thioredoxin family protein F:nucleic acid binding;P:cell redox homeostasis;C:endomembrane system;BOMPFAV O.I. C.G. H.G.
10.9 99.2 5.4 At2g27395 817285 - pseudogene of cysteine protease-related O.I. C.G. H.G.
10.9 99.2 5.2 At3g14950 820724 TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2) F:binding;P:cell redox homeostasis;C:cellular_component unknown;OMBFPAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
57.4	99.8	35.4	At1g65000	842808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.3	99.8	3.2	At1g56530	842106	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
54.2	99.8	3.2	At1g32670	840161	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.3	99.8	7.0	At2g22710	816801	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
42.8	99.8	590.2	At5g66040	836734	STR16 (SULFURTRANSFERASE PROTEIN 16)	F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
37.2	99.7	10.7	At4g17200	827431	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
36.6	99.7	333.0	At5g22580	832321	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF	O.I.	C.G.	H.G.
36.6	99.7	12.6	At3g43930	823509	-	F:molecular_function unknown;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
32.5	99.7	410.5	At5g14920	831344	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA	O.I.	C.G.	H.G.
30.8	99.7	13.9	At5g35690	833542	-	F:unknown;P:unknown;C:cellular_component unknown;FOPMBV	O.I.	C.G.	H.G.
28.6	99.7	44.7	At5g64870	836610	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA	O.I.	C.G.	H.G.
27.7	99.7	8.3	At5g19810	832101	proline-rich extensin-like family protein	F:unknown;P:unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
26.0	99.7	7.7	At5g38370	833820	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;P	O.I.	C.G.	H.G.
25.4	99.6	5.4	At2g13720	815856	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPV	O.I.	C.G.	H.G.
24.8	99.6	4.8	At1g12490	837806	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
24.2	99.6	5.1	At4g03880	3770323	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
23.9	99.6	206.6	At1g70890	843427	MLP43 (MLP-LIKE PROTEIN 43)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;P	O.I.	C.G.	H.G.
22.4	99.6	2.1	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
21.7	99.6	530.0	At3g16770	820929	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.	O.I.	C.G.	H.G.
21.6	99.6	159.2	At4g34410	829591	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
21.5	99.6	6.3	At3g31350	822885	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.3	99.6	1.9	At4g03990	825711	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
21.0	99.6	6.5	At5g02730	831820	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
21.0	99.6	6.4	At5g36810	833648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
20.8	99.6	10.2	At1g01690	839243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
20.7	99.6	6.0	At3g17260	3768760	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
19.8	99.6	275.9	At2g23590	816891	MES8 (METHYL ESTERASE 8)	Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
18.9	99.5	17.4	At1g18680	838449	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:N-terminal protein myristoylation;C:chloroplast;POB	O.I.	C.G.	H.G.
18.5	99.5	7.7	At5g48390	834894	ATZIP4	Defective in meiotic chromosome segregation	O.I.	C.G.	H.G.
18.4	99.5	4.1	At1g41900	840803	transposable element gene	pseudogene of myosin heavy chain-related	O.I.	C.G.	H.G.
18.1	99.5	37.2	At1g72920	843623	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity;P:response to wounding, defense response;C:intrinsic to membrane;PB	O.I.	C.G.	H.G.
18.0	99.5	263.8	At3g57450	824912	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.0	99.5	12.4	At5g20560	832178	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
17.7	99.5	7.9	At4g00190	828218	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFOAM	O.I.	C.G.	H.G.
17.6	99.5	1203.9	At3g16640	820916	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.	O.I.	C.G.	H.G.
17.6	99.5	126.4	At3g01690	821094	-	F:unknown;P:unknown;C:unknown;OBMPFVA	O.I.	C.G.	H.G.
17.6	99.5	24.4	At3g53410	824509	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF	O.I.	C.G.	H.G.
17.5	99.5	9.2	At2g11010	815568	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPOBFA	O.I.	C.G.	H.G.
17.3	99.5	67.2	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
17.3	99.5	3.5	At1g39350	840697	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
17.0	99.5	84.9	At2g42760	818876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
17.0	99.5	24.2	At5g44350	834461	ethylene-responsive nuclear protein -related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
16.2	99.5	4.7	At4g03480	827906	protein binding	F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
16.0	99.5	198.7	At5g22270	832287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.0	99.5	7.0	At4g25430	828646	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
16.0	99.5	6.3	At2g01240	814651	reticulon family protein (RTNLB15)	F:unknown;P:biological_process unknown;C:endoplasmic reticulum;PMF	O.I.	C.G.	H.G.
15.6	99.5	220.6	At5g44420	834469	PDF1.2	Encodes an ethylene- and jasmonate-responsive plant defensin. mRNA levels are not responsive to salicylic acid treatment; although jasmonate and salicylic acid can act synergistically to enhance the expression of this gene. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
15.4	99.5	8.0	At4g19580	827700	heat shock protein binding	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
15.2	99.4	8.5	At4g26040	828710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.2	99.4	6.2	At5g48710	834929	ubiquitin-related	F:unknown;P:protein modification process;C:cellular_component unknown;MPFOV	O.I.	C.G.	H.G.
15.1	99.4	7.5	At5g65080	836632	MAF5 (MADS AFFECTING FLOWERING 5)	Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.	O.I.	C.G.	H.G.
15.1	99.4	3.1	At1g43880	840984	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
15.0	99.4	47.3	At1g47960	841214	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.	O.I.	C.G.	H.G.
14.9	99.4	5.2	At4g13190	826933	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
14.8	99.4	368.9	At5g14780	831330	FDH (FORMATE DEHYDROGENASE)	Encodes a NAD-dependent formate dehydrogenase.	O.I.	C.G.	H.G.
14.8	99.4	5.7	At4g18000	827525	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.5	99.4	93.9	At3g60300	825201	RWD domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
14.4	99.4	5.6	At3g42240	823205	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.2	99.4	168.2	At5g40450	834043	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
14.2	99.4	5.8	At2g02830	3768540	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.0	99.4	968.2	At1g20620	838651	CAT3 (CATALASE 3)	Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.	O.I.	C.G.	H.G.
13.9	99.4	7.0	At5g32630	3771080	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
13.9	99.4	6.4	At1g24060	839018	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.8	99.4	24.6	At4g16870	3770172	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
13.5	99.4	1091.4	At2g25510	817089	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.5	99.4	2.7	At1g39430	840698	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
13.4	99.4	38.9	At1g07500	837264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.3	99.4	6.1	At1g52840	841718	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
13.2	99.4	3.3	At3g63230	825498	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.9	99.3	8.6	At3g45990	823742	actin-depolymerizing factor, putative	F:actin binding;P:biological_process unknown;C:intracellular;MPOF	O.I.	C.G.	H.G.
12.8	99.3	5.9	At2g34210	817982	structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor	F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV	O.I.	C.G.	H.G.
12.8	99.3	2.8	At2g23920	816924	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
12.7	99.3	6.6	At4g38990	830054	AtGH9B16 (Arabidopsis thaliana glycosyl hydrolase 9B16)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system	O.I.	C.G.	H.G.
12.7	99.3	5.8	At4g15060	827169	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBF	O.I.	C.G.	H.G.
12.7	99.3	2.0	At1g26860	837037	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.5	99.3	6.4	At5g41170	834119	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
12.2	99.3	7.0	At2g03580	814887	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.1	99.3	2.5	At3g42350	823228	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.0	99.3	14.8	At5g03210	831903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.0	99.3	10.2	At3g20475	821593	MSH5 (MUTS-HOMOLOGUE 5)	Encodes MSH5, a homologue of the MutS-homolog family of genes required for normal levels of recombination in budding yeast, mouse and Caenorhabditis elegans. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers. Transcripts of AtMSH5 are specific to reproductive tissues and expression of the protein is abundant during prophase I of meiosis. Involved in meiotic recombination. Required for the formation of Class I interference-sensitive crossovers.	O.I.	C.G.	H.G.
12.0	99.3	8.3	At2g10340	815493	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.0	99.3	2.9	At2g10630	3767858	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.7	99.3	977.5	At4g21960	828285	PRXR1	Encodes AT4g21960 (AT4g21960/T8O5_170).	O.I.	C.G.	H.G.
11.7	99.3	4.7	At1g31000	839986	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.6	99.3	7.8	At3g48830	824044	polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein	F:polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity;P:RNA processing;C:endomembrane system;BOMFPVA	O.I.	C.G.	H.G.
11.5	99.3	5.1	At4g18420	827572	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.5	99.3	3.7	At1g60320	842327	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PB	O.I.	C.G.	H.G.
11.5	99.3	1.8	At2g14300	3768068	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.4	99.3	15.9	At1g34270	840327	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOF	O.I.	C.G.	H.G.
11.4	99.3	11.8	At3g48550	824014	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.3	99.3	9.1	At4g11950	826802	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.3	99.3	9.1	At5g30500	833137	galactinol synthase, putative	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
11.3	99.3	6.3	At2g12910	3768701	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.2	99.2	525.7	At1g19550	838542	dehydroascorbate reductase, putative	F:glutathione dehydrogenase (ascorbate) activity;P:unknown;C:unknown;MPBOF	O.I.	C.G.	H.G.
11.1	99.2	5.8	At3g20400	821585	EMB2743 (EMBRYO DEFECTIVE 2743)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.0	99.2	3.9	At3g14480	820671	glycine/proline-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
10.9	99.2	192.3	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
10.9	99.2	9.4	At1g52990	841732	thioredoxin family protein	F:nucleic acid binding;P:cell redox homeostasis;C:endomembrane system;BOMPFAV	O.I.	C.G.	H.G.
10.9	99.2	5.4	At2g27395	817285	-	pseudogene of cysteine protease-related	O.I.	C.G.	H.G.
10.9	99.2	5.2	At3g14950	820724	TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2)	F:binding;P:cell redox homeostasis;C:cellular_component unknown;OMBFPAV	O.I.	C.G.	H.G.

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GSM ID	GSM258000
Assay name	Phloem exudate_2
GSE experiment	GSE10247: Transcriptome analysis of the Arabidopsis phloem

Microarray experiments to specifically-expressed genes

GSM ID GSM258000 Assay name Phloem exudate_2 GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

GSM ID GSM258000

Assay name Phloem exudate_2

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem