CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM257998

Assay name Phloem exudate_1

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
91.0 99.9 3.2 At2g16820 816183 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
50.9 99.8 175.7 At3g60300 825201 RWD domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOF O.I. C.G. H.G.
49.4 99.8 505.7 At5g14920 831344 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA O.I. C.G. H.G.
42.0 99.8 356.8 At5g22580 832321 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF O.I. C.G. H.G.
40.8 99.8 1552.4 At3g22240 821794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
35.6 99.7 537.8 At5g66040 836734 STR16 (SULFURTRANSFERASE PROTEIN 16) F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
33.0 99.7 285.2 At5g22270 832287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.3 99.7 1074.5 At3g22231 821788 PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato. O.I. C.G. H.G.
31.0 99.7 12.7 At3g27473 822369 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO O.I. C.G. H.G.
27.9 99.7 1.7 At4g03810 3770158 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
27.5 99.7 596.3 At3g16770 820929 ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. O.I. C.G. H.G.
26.2 99.7 8.0 At5g28920 833015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
25.7 99.7 314.5 At3g57450 824912 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
25.4 99.6 4.8 At3g30740 3769121 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
25.3 99.6 3.6 At1g63400 842646 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
25.2 99.6 212.5 At1g70890 843427 MLP43 (MLP-LIKE PROTEIN 43) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;P O.I. C.G. H.G.
24.9 99.6 80.5 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
24.4 99.6 6.7 At4g13190 826933 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
22.4 99.6 4.9 At5g48200 834873 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.7 99.6 202.7 At5g40450 834043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV O.I. C.G. H.G.
20.1 99.6 11.9 At3g46070 823750 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
19.2 99.6 13.6 At2g32490 817810 - pseudogene of 3'-5' exonuclease domain-containing protein O.I. C.G. H.G.
19.0 99.5 19.4 At1g17250 838296 AtRLP3 (Receptor Like Protein 3) F:protein binding, protein kinase activity;P:signal transduction;C:unknown;PMOBFAV O.I. C.G. H.G.
18.4 99.5 129.3 At3g01690 821094 - F:unknown;P:unknown;C:unknown;OBMPFVA O.I. C.G. H.G.
18.3 99.5 4.3 At2g17490 3768408 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
18.1 99.5 5.5 At3g53910 824558 malate dehydrogenase-related F:L-malate dehydrogenase activity, catalytic activity;P:malate metabolic process, carbohydrate metabolic process;C:endomembrane system;PMBOF O.I. C.G. H.G.
17.7 99.5 2.7 At1g37340 3767070 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
17.5 99.5 5.2 At4g22800 828379 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.2 99.5 2.2 At2g30925 817643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.5 99.5 638.0 At1g19550 838542 dehydroascorbate reductase, putative F:glutathione dehydrogenase (ascorbate) activity;P:unknown;C:unknown;MPBOF O.I. C.G. H.G.
16.5 99.5 251.9 At2g23590 816891 MES8 (METHYL ESTERASE 8) Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
16.4 99.5 8.5 At1g74110 843751 CYP78A10 member of CYP78A O.I. C.G. H.G.
15.7 99.5 18.6 At1g51550 841580 F-box family protein F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:chloroplast;MOPFBA O.I. C.G. H.G.
14.8 99.4 26.9 At4g13195 826934 CLE44 (CLAVATA3/ESR-RELATED 44) Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770). O.I. C.G. H.G.
14.7 99.4 5.5 At1g43040 840903 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
14.7 99.4 1.6 At4g03990 825711 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.6 99.4 1.7 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.1 99.4 504.3 At3g49110 824072 PRXCA (PEROXIDASE CA) Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. O.I. C.G. H.G.
13.6 99.4 34.4 At1g01710 839254 acyl-CoA thioesterase family protein F:cyclic nucleotide binding, acyl-CoA thioesterase activity;P:acyl-CoA metabolic process;C:peroxisome;BOMFP O.I. C.G. H.G.
13.5 99.4 6.9 At5g16860 831549 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
13.4 99.4 143.6 At1g80180 844358 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
13.1 99.4 3.1 At4g36370 829789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.0 99.4 524.7 At1g75750 843908 GASA1 (GAST1 PROTEIN HOMOLOG 1) GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data O.I. C.G. H.G.
12.2 99.3 451.9 At5g25610 832636 RD22 responsive to dehydration 22 (RD22) mediated by ABA O.I. C.G. H.G.
12.2 99.3 354.3 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. O.I. C.G. H.G.
12.2 99.3 4.7 At5g30420 3770955 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.1 99.3 997.6 At3g16640 820916 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well. O.I. C.G. H.G.
11.9 99.3 28.8 At5g64870 836610 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA O.I. C.G. H.G.
11.8 99.3 178.1 At1g78460 844182 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.
11.8 99.3 15.3 At4g38530 830010 ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1) Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670. O.I. C.G. H.G.
11.5 99.3 4.4 At5g02900 831752 CYP96A13 member of CYP96A O.I. C.G. H.G.
11.4 99.3 282.0 At2g21620 816700 RD2 Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. O.I. C.G. H.G.
11.4 99.3 14.4 At5g03210 831903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.4 99.3 3.5 At3g32300 3769265 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.4 99.3 3.4 At1g47300 841133 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
11.3 99.3 11.8 At3g48550 824014 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.3 99.3 9.3 At2g24660 3768225 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.3 99.3 6.9 At4g01740 828012 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
11.3 99.3 6.5 At3g13140 820502 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:cellular_component unknown;PFMBO O.I. C.G. H.G.
11.1 99.2 95.8 At2g15050 815994 LTP Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
11.1 99.2 8.7 At3g62320 825405 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.0 99.2 5.4 At3g32190 822986 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV O.I. C.G. H.G.
10.8 99.2 5.7 At2g14550 3767906 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.5 99.2 430.3 At5g41700 834173 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2 O.I. C.G. H.G.
10.1 99.2 118.1 At2g34585 818023 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;P O.I. C.G. H.G.
10.0 99.2 4.9 At3g09750 820133 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.8 99.1 64.6 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
9.8 99.1 3.7 At3g06895 819875 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.7 99.1 3.9 At5g28240 832902 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
9.6 99.1 800.1 At1g20620 838651 CAT3 (CATALASE 3) Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. O.I. C.G. H.G.
9.5 99.1 28.4 At1g56010 842052 NAC1 Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1) O.I. C.G. H.G.
9.4 99.1 2.7 At5g06040 830491 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.3 99.1 11.0 At2g44480 819055 BGLU17 (BETA GLUCOSIDASE 17) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
9.3 99.1 5.9 At2g25030 3768249 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
9.2 99.1 450.9 At5g11670 831039 ATNADP-ME2 (NADP-malic enzyme 2) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis. O.I. C.G. H.G.
9.2 99.1 27.1 At5g05710 830455 pleckstrin homology (PH) domain-containing protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MOPFV O.I. C.G. H.G.
9.2 99.1 24.0 At4g00040 828224 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF O.I. C.G. H.G.
9.1 99.1 17.0 At1g33720 840263 CYP76C6 member of CYP76C O.I. C.G. H.G.
8.9 99.0 56.3 At2g01090 814638 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMF O.I. C.G. H.G.
8.9 99.0 15.8 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
8.9 99.0 4.5 At3g56700 824837 FAR6 (FATTY ACID REDUCTASE 6) F:fatty acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP O.I. C.G. H.G.
8.9 99.0 3.5 At2g36030 818176 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.8 99.0 5.0 At2g35890 818162 CPK25 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
8.7 99.0 13.5 At3g47630 823917 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPO O.I. C.G. H.G.
8.7 99.0 6.0 At3g23850 821968 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.7 99.0 5.2 At3g45950 823738 splicing factor-related F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
8.6 99.0 39.2 At1g07650 837278 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
8.6 99.0 6.0 At2g25820 817124 transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
91.0	99.9	3.2	At2g16820	816183	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
50.9	99.8	175.7	At3g60300	825201	RWD domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
49.4	99.8	505.7	At5g14920	831344	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA	O.I.	C.G.	H.G.
42.0	99.8	356.8	At5g22580	832321	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF	O.I.	C.G.	H.G.
40.8	99.8	1552.4	At3g22240	821794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
35.6	99.7	537.8	At5g66040	836734	STR16 (SULFURTRANSFERASE PROTEIN 16)	F:molecular_function unknown;P:aging;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
33.0	99.7	285.2	At5g22270	832287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.3	99.7	1074.5	At3g22231	821788	PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)	Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.	O.I.	C.G.	H.G.
31.0	99.7	12.7	At3g27473	822369	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO	O.I.	C.G.	H.G.
27.9	99.7	1.7	At4g03810	3770158	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
27.5	99.7	596.3	At3g16770	820929	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.	O.I.	C.G.	H.G.
26.2	99.7	8.0	At5g28920	833015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
25.7	99.7	314.5	At3g57450	824912	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
25.4	99.6	4.8	At3g30740	3769121	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
25.3	99.6	3.6	At1g63400	842646	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
25.2	99.6	212.5	At1g70890	843427	MLP43 (MLP-LIKE PROTEIN 43)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;P	O.I.	C.G.	H.G.
24.9	99.6	80.5	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
24.4	99.6	6.7	At4g13190	826933	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
22.4	99.6	4.9	At5g48200	834873	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.7	99.6	202.7	At5g40450	834043	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
20.1	99.6	11.9	At3g46070	823750	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
19.2	99.6	13.6	At2g32490	817810	-	pseudogene of 3'-5' exonuclease domain-containing protein	O.I.	C.G.	H.G.
19.0	99.5	19.4	At1g17250	838296	AtRLP3 (Receptor Like Protein 3)	F:protein binding, protein kinase activity;P:signal transduction;C:unknown;PMOBFAV	O.I.	C.G.	H.G.
18.4	99.5	129.3	At3g01690	821094	-	F:unknown;P:unknown;C:unknown;OBMPFVA	O.I.	C.G.	H.G.
18.3	99.5	4.3	At2g17490	3768408	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
18.1	99.5	5.5	At3g53910	824558	malate dehydrogenase-related	F:L-malate dehydrogenase activity, catalytic activity;P:malate metabolic process, carbohydrate metabolic process;C:endomembrane system;PMBOF	O.I.	C.G.	H.G.
17.7	99.5	2.7	At1g37340	3767070	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
17.5	99.5	5.2	At4g22800	828379	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.2	99.5	2.2	At2g30925	817643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.5	99.5	638.0	At1g19550	838542	dehydroascorbate reductase, putative	F:glutathione dehydrogenase (ascorbate) activity;P:unknown;C:unknown;MPBOF	O.I.	C.G.	H.G.
16.5	99.5	251.9	At2g23590	816891	MES8 (METHYL ESTERASE 8)	Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
16.4	99.5	8.5	At1g74110	843751	CYP78A10	member of CYP78A	O.I.	C.G.	H.G.
15.7	99.5	18.6	At1g51550	841580	F-box family protein	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:chloroplast;MOPFBA	O.I.	C.G.	H.G.
14.8	99.4	26.9	At4g13195	826934	CLE44 (CLAVATA3/ESR-RELATED 44)	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).	O.I.	C.G.	H.G.
14.7	99.4	5.5	At1g43040	840903	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
14.7	99.4	1.6	At4g03990	825711	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.6	99.4	1.7	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.1	99.4	504.3	At3g49110	824072	PRXCA (PEROXIDASE CA)	Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.	O.I.	C.G.	H.G.
13.6	99.4	34.4	At1g01710	839254	acyl-CoA thioesterase family protein	F:cyclic nucleotide binding, acyl-CoA thioesterase activity;P:acyl-CoA metabolic process;C:peroxisome;BOMFP	O.I.	C.G.	H.G.
13.5	99.4	6.9	At5g16860	831549	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
13.4	99.4	143.6	At1g80180	844358	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
13.1	99.4	3.1	At4g36370	829789	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.0	99.4	524.7	At1g75750	843908	GASA1 (GAST1 PROTEIN HOMOLOG 1)	GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data	O.I.	C.G.	H.G.
12.2	99.3	451.9	At5g25610	832636	RD22	responsive to dehydration 22 (RD22) mediated by ABA	O.I.	C.G.	H.G.
12.2	99.3	354.3	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	O.I.	C.G.	H.G.
12.2	99.3	4.7	At5g30420	3770955	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.1	99.3	997.6	At3g16640	820916	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.	O.I.	C.G.	H.G.
11.9	99.3	28.8	At5g64870	836610	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA	O.I.	C.G.	H.G.
11.8	99.3	178.1	At1g78460	844182	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.
11.8	99.3	15.3	At4g38530	830010	ATPLC1 (ARABIDOPSIS THALIANA PHOSPHOLIPASE C 1)	Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.	O.I.	C.G.	H.G.
11.5	99.3	4.4	At5g02900	831752	CYP96A13	member of CYP96A	O.I.	C.G.	H.G.
11.4	99.3	282.0	At2g21620	816700	RD2	Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.	O.I.	C.G.	H.G.
11.4	99.3	14.4	At5g03210	831903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.4	99.3	3.5	At3g32300	3769265	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.4	99.3	3.4	At1g47300	841133	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
11.3	99.3	11.8	At3g48550	824014	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.3	99.3	9.3	At2g24660	3768225	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.3	99.3	6.9	At4g01740	828012	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
11.3	99.3	6.5	At3g13140	820502	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:cellular_component unknown;PFMBO	O.I.	C.G.	H.G.
11.1	99.2	95.8	At2g15050	815994	LTP	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
11.1	99.2	8.7	At3g62320	825405	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.0	99.2	5.4	At3g32190	822986	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOFBPAV	O.I.	C.G.	H.G.
10.8	99.2	5.7	At2g14550	3767906	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.5	99.2	430.3	At5g41700	834173	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	One of the polypeptides that constitute the ubiquitin-conjugating enzyme E2	O.I.	C.G.	H.G.
10.1	99.2	118.1	At2g34585	818023	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;P	O.I.	C.G.	H.G.
10.0	99.2	4.9	At3g09750	820133	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.8	99.1	64.6	At2g42760	818876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
9.8	99.1	3.7	At3g06895	819875	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.7	99.1	3.9	At5g28240	832902	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
9.6	99.1	800.1	At1g20620	838651	CAT3 (CATALASE 3)	Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.	O.I.	C.G.	H.G.
9.5	99.1	28.4	At1g56010	842052	NAC1	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)	O.I.	C.G.	H.G.
9.4	99.1	2.7	At5g06040	830491	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.3	99.1	11.0	At2g44480	819055	BGLU17 (BETA GLUCOSIDASE 17)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
9.3	99.1	5.9	At2g25030	3768249	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
9.2	99.1	450.9	At5g11670	831039	ATNADP-ME2 (NADP-malic enzyme 2)	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis.	O.I.	C.G.	H.G.
9.2	99.1	27.1	At5g05710	830455	pleckstrin homology (PH) domain-containing protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MOPFV	O.I.	C.G.	H.G.
9.2	99.1	24.0	At4g00040	828224	chalcone and stilbene synthase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, biosynthetic process, metabolic process;C:unknown;PBOF	O.I.	C.G.	H.G.
9.1	99.1	17.0	At1g33720	840263	CYP76C6	member of CYP76C	O.I.	C.G.	H.G.
8.9	99.0	56.3	At2g01090	814638	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMF	O.I.	C.G.	H.G.
8.9	99.0	15.8	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
8.9	99.0	4.5	At3g56700	824837	FAR6 (FATTY ACID REDUCTASE 6)	F:fatty acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP	O.I.	C.G.	H.G.
8.9	99.0	3.5	At2g36030	818176	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.8	99.0	5.0	At2g35890	818162	CPK25	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
8.7	99.0	13.5	At3g47630	823917	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPO	O.I.	C.G.	H.G.
8.7	99.0	6.0	At3g23850	821968	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.7	99.0	5.2	At3g45950	823738	splicing factor-related	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
8.6	99.0	39.2	At1g07650	837278	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
8.6	99.0	6.0	At2g25820	817124	transcription factor	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM257998
Assay name	Phloem exudate_1
GSE experiment	GSE10247: Transcriptome analysis of the Arabidopsis phloem

Microarray experiments to specifically-expressed genes

GSM ID GSM257998 Assay name Phloem exudate_1 GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem

GSM ID GSM257998

Assay name Phloem exudate_1

GSE experiment GSE10247: Transcriptome analysis of the Arabidopsis phloem