CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM253165

Assay name 48h into an extended nightB

GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
201.4 100.0 193.6 At5g23050 832369 AAE17 (ACYL-ACTIVATING ENZYME 17) F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
136.2 99.9 186.7 At1g21400 838739 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
131.9 99.9 123.1 At1g79700 844309 ovule development protein, putative F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
130.6 99.9 405.4 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase O.I. C.G. H.G.
109.2 99.9 268.5 At1g64660 842774 ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis. O.I. C.G. H.G.
95.1 99.9 316.5 At4g33150 829452 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme F:unknown;P:unknown;C:unknown;OBFMPA O.I. C.G. H.G.
92.3 99.9 133.6 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA O.I. C.G. H.G.
92.0 99.9 241.1 At1g72060 843537 serine-type endopeptidase inhibitor F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
88.9 99.9 202.1 At3g51000 824264 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
87.7 99.9 307.8 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
87.3 99.9 49.0 At1g80190 844359 PSF1 (PARTNER OF SLD FIVE 1) Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication. O.I. C.G. H.G.
83.4 99.9 156.9 At2g42890 818890 AML2 (ARABIDOPSIS-MEI2-LIKE 2) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices. O.I. C.G. H.G.
76.3 99.9 197.9 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta O.I. C.G. H.G.
73.7 99.9 73.4 At1g28260 839720 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
71.4 99.9 73.3 At5g57910 835902 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
71.2 99.9 99.5 At1g22740 838880 RABG3B GTP-binding protein Rab7 O.I. C.G. H.G.
71.1 99.9 81.5 At2g43400 818941 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. O.I. C.G. H.G.
67.6 99.9 134.7 At1g55510 841998 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) branched-chain alpha-keto acid decarboxylase E1 beta O.I. C.G. H.G.
60.2 99.8 100.6 At1g76410 843974 ATL8 F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
59.4 99.8 270.9 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. O.I. C.G. H.G.
57.4 99.8 77.3 At3g05640 819731 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFV O.I. C.G. H.G.
57.2 99.8 161.7 At2g22980 816829 serine-type carboxypeptidase F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
56.5 99.8 159.5 At1g26665 839207 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
55.5 99.8 152.2 At5g53970 835480 aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment O.I. C.G. H.G.
52.6 99.8 183.3 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
51.0 99.8 78.4 At3g02340 821090 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVAB O.I. C.G. H.G.
50.7 99.8 130.4 At5g35330 833487 MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02) Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. O.I. C.G. H.G.
49.7 99.8 66.8 At5g66180 836750 - F:unknown;P:unknown;C:cellular_component unknown;BOMAFP O.I. C.G. H.G.
49.7 99.8 45.2 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase O.I. C.G. H.G.
49.0 99.8 499.0 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
48.8 99.8 166.1 At1g07040 837215 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
48.0 99.8 127.2 At5g45360 834572 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
47.9 99.8 226.2 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
45.9 99.8 62.1 At5g45310 834567 unknown protein F:unknown;P:unknown;C:endomembrane system;OMVBFPA O.I. C.G. H.G.
45.2 99.8 136.9 At1g80160 844356 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPO O.I. C.G. H.G.
44.0 99.8 42.2 At1g36070 840511 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA O.I. C.G. H.G.
43.9 99.8 24.5 At3g15440 820783 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.4 99.8 145.3 At4g36730 829826 GBF1 member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box O.I. C.G. H.G.
39.4 99.8 162.1 At2g21240 816663 BPC4 (BASIC PENTACYSTEINE 4) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMB O.I. C.G. H.G.
39.4 99.8 68.9 At4g16780 827384 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. O.I. C.G. H.G.
39.2 99.8 350.8 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. C.G. H.G.
38.8 99.8 174.6 At5g39520 833948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
38.3 99.8 134.7 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
38.2 99.8 38.8 At3g15620 820804 UVR3 (UV REPAIR DEFECTIVE 3) Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. O.I. C.G. H.G.
37.2 99.7 160.8 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
37.0 99.7 168.5 At1g58180 842185 carbonic anhydrase family protein / carbonate dehydratase family protein F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA O.I. C.G. H.G.
37.0 99.7 74.1 At5g22290 832289 anac089 (Arabidopsis NAC domain containing protein 89) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
36.1 99.7 315.5 At3g62650 825439 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
35.7 99.7 136.9 At4g30550 829178 glutamine amidotransferase class-I domain-containing protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;OBAFPM O.I. C.G. H.G.
35.6 99.7 186.1 At4g34030 829549 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. O.I. C.G. H.G.
35.1 99.7 137.2 At5g63030 836423 glutaredoxin, putative F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOPMFVA O.I. C.G. H.G.
34.0 99.7 128.7 At2g36900 818264 MEMB11 (MEMBRIN 11) member of Membrin Gene Family O.I. C.G. H.G.
33.2 99.7 192.2 At5g57655 835871 xylose isomerase family protein F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF O.I. C.G. H.G.
32.6 99.7 75.3 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
31.8 99.7 86.1 At2g40420 818635 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
31.7 99.7 306.8 At4g37300 829885 MEE59 (maternal effect embryo arrest 59) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
31.7 99.7 24.3 At5g57650 835870 eukaryotic translation initiation factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.3 99.7 78.5 At1g33050 840200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP O.I. C.G. H.G.
31.3 99.7 41.7 At1g09910 837523 lyase F:lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;PFB O.I. C.G. H.G.
31.0 99.7 20.5 At5g04880 3770684 - pseudogene of ABC transporter family protein O.I. C.G. H.G.
30.9 99.7 315.3 At5g05690 830453 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses. O.I. C.G. H.G.
29.4 99.7 33.3 At4g20930 827841 3-hydroxyisobutyrate dehydrogenase, putative F:in 7 functions;P:pentose-phosphate shunt, valine metabolic process, valine catabolic process, metabolic process;C:unknown;OBMFPAV O.I. C.G. H.G.
29.3 99.7 492.8 At1g62480 842545 vacuolar calcium-binding protein-related F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
29.0 99.7 239.2 At4g15530 827226 PPDK (pyruvate orthophosphate dikinase) The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues. O.I. C.G. H.G.
29.0 99.7 53.9 At1g05890 837099 zinc finger protein-related F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
28.2 99.7 125.2 At2g15580 816051 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFBV O.I. C.G. H.G.
27.9 99.7 212.0 At1g53580 841793 GLY3 (GLYOXALASE II 3) F:hydrolase activity, hydroxyacylglutathione hydrolase activity;P:response to salt stress, methylglyoxal catabolic process to D-lactate;C:unknown;BOMAFP O.I. C.G. H.G.
27.8 99.7 186.4 At2g38400 818421 AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3) alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA, O.I. C.G. H.G.
27.8 99.7 115.8 At4g28260 828941 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.8 99.7 86.7 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
27.6 99.7 176.8 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB O.I. C.G. H.G.
27.0 99.7 75.5 At5g05930 830478 guanylyl cyclase-related (GC1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOA O.I. C.G. H.G.
26.7 99.7 109.1 At1g45976 841106 SBP1 (s-ribonuclease binding protein 1) F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFB O.I. C.G. H.G.
25.3 99.6 41.7 At1g01725 839271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.1 99.6 605.9 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
25.1 99.6 70.9 At2g38820 818464 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
25.0 99.6 70.5 At2g26430 817183 RCY1 (ARGININE-RICH CYCLIN 1) Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast. O.I. C.G. H.G.
24.9 99.6 206.6 At2g26740 817215 ATSEH (Arabidopsis thaliana soluble epoxide hydrolase) Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress. O.I. C.G. H.G.
24.9 99.6 177.9 At1g77180 844055 chromatin protein family Encodes a protein with a putative role in mRNA splicing. O.I. C.G. H.G.
24.7 99.6 267.2 At2g14170 815903 ALDH6B2 Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase O.I. C.G. H.G.
23.3 99.6 208.2 At1g16240 838193 SYP51 (SYNTAXIN OF PLANTS 51) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. O.I. C.G. H.G.
23.1 99.6 176.4 At4g13530 826985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.9 99.6 30.3 At5g55790 835673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.6 99.6 29.9 At3g21790 821733 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
22.5 99.6 68.6 At1g26580 839198 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
22.4 99.6 139.1 At3g59930 825163 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
22.3 99.6 30.2 At3g51500 824313 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
22.2 99.6 290.7 At3g51840 824347 ACX4 (ACYL-COA OXIDASE 4) Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis. O.I. C.G. H.G.
22.2 99.6 153.7 At2g18280 816344 AtTLP2 (TUBBY LIKE PROTEIN 2) Member of TLP family O.I. C.G. H.G.
22.2 99.6 64.6 At3g11560 820329 unknown protein F:unknown;P:unknown;C:chloroplast, chloroplast envelope;P O.I. C.G. H.G.
22.2 99.6 30.0 At3g62950 825470 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO O.I. C.G. H.G.
22.1 99.6 18.9 At2g01940 814725 nucleic acid binding / transcription factor/ zinc ion binding May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. O.I. C.G. H.G.
22.0 99.6 97.1 At2g18050 816317 HIS1-3 (HISTONE H1-3) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. O.I. C.G. H.G.
21.9 99.6 47.3 At2g26210 817161 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;OMBPFVA O.I. C.G. H.G.
21.7 99.6 100.5 At1g43700 840957 VIP1 (VIRE2-INTERACTING PROTEIN 1) Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. O.I. C.G. H.G.
20.9 99.6 211.2 At3g48530 824012 KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;BOMAFP O.I. C.G. H.G.
20.9 99.6 157.6 At1g11530 837696 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. O.I. C.G. H.G.
20.8 99.6 166.3 At3g60140 825184 DIN2 (DARK INDUCIBLE 2) Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
20.8 99.6 54.3 At1g05840 837094 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO O.I. C.G. H.G.
20.7 99.6 54.0 At3g19990 821537 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PBO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
201.4	100.0	193.6	At5g23050	832369	AAE17 (ACYL-ACTIVATING ENZYME 17)	F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
136.2	99.9	186.7	At1g21400	838739	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
131.9	99.9	123.1	At1g79700	844309	ovule development protein, putative	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
130.6	99.9	405.4	At5g54080	835494	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	homogentisate 1,2-dioxygenase	O.I.	C.G.	H.G.
109.2	99.9	268.5	At1g64660	842774	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.	O.I.	C.G.	H.G.
95.1	99.9	316.5	At4g33150	829452	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	F:unknown;P:unknown;C:unknown;OBFMPA	O.I.	C.G.	H.G.
92.3	99.9	133.6	At1g19540	838541	isoflavone reductase, putative	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA	O.I.	C.G.	H.G.
92.0	99.9	241.1	At1g72060	843537	serine-type endopeptidase inhibitor	F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
88.9	99.9	202.1	At3g51000	824264	epoxide hydrolase, putative	F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
87.7	99.9	307.8	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
87.3	99.9	49.0	At1g80190	844359	PSF1 (PARTNER OF SLD FIVE 1)	Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.	O.I.	C.G.	H.G.
83.4	99.9	156.9	At2g42890	818890	AML2 (ARABIDOPSIS-MEI2-LIKE 2)	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.	O.I.	C.G.	H.G.
76.3	99.9	197.9	At3g13450	820547	DIN4 (DARK INDUCIBLE 4)	branched chain alpha-keto acid dehydrogenase E1 beta	O.I.	C.G.	H.G.
73.7	99.9	73.4	At1g28260	839720	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
71.4	99.9	73.3	At5g57910	835902	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
71.2	99.9	99.5	At1g22740	838880	RABG3B	GTP-binding protein Rab7	O.I.	C.G.	H.G.
71.1	99.9	81.5	At2g43400	818941	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.	O.I.	C.G.	H.G.
67.6	99.9	134.7	At1g55510	841998	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	branched-chain alpha-keto acid decarboxylase E1 beta	O.I.	C.G.	H.G.
60.2	99.8	100.6	At1g76410	843974	ATL8	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
59.4	99.8	270.9	At1g06570	837168	PDS1 (PHYTOENE DESATURATION 1)	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	O.I.	C.G.	H.G.
57.4	99.8	77.3	At3g05640	819731	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFV	O.I.	C.G.	H.G.
57.2	99.8	161.7	At2g22980	816829	serine-type carboxypeptidase	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
56.5	99.8	159.5	At1g26665	839207	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
55.5	99.8	152.2	At5g53970	835480	aminotransferase, putative	encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment	O.I.	C.G.	H.G.
52.6	99.8	183.3	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
51.0	99.8	78.4	At3g02340	821090	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVAB	O.I.	C.G.	H.G.
50.7	99.8	130.4	At5g35330	833487	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	O.I.	C.G.	H.G.
49.7	99.8	66.8	At5g66180	836750	-	F:unknown;P:unknown;C:cellular_component unknown;BOMAFP	O.I.	C.G.	H.G.
49.7	99.8	45.2	At3g26220	822223	CYP71B3	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
49.0	99.8	499.0	At3g47340	823888	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
48.8	99.8	166.1	At1g07040	837215	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
48.0	99.8	127.2	At5g45360	834572	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
47.9	99.8	226.2	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
45.9	99.8	62.1	At5g45310	834567	unknown protein	F:unknown;P:unknown;C:endomembrane system;OMVBFPA	O.I.	C.G.	H.G.
45.2	99.8	136.9	At1g80160	844356	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPO	O.I.	C.G.	H.G.
44.0	99.8	42.2	At1g36070	840511	WD-40 repeat family protein	F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA	O.I.	C.G.	H.G.
43.9	99.8	24.5	At3g15440	820783	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.4	99.8	145.3	At4g36730	829826	GBF1	member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box	O.I.	C.G.	H.G.
39.4	99.8	162.1	At2g21240	816663	BPC4 (BASIC PENTACYSTEINE 4)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMB	O.I.	C.G.	H.G.
39.4	99.8	68.9	At4g16780	827384	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.	O.I.	C.G.	H.G.
39.2	99.8	350.8	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	C.G.	H.G.
38.8	99.8	174.6	At5g39520	833948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
38.3	99.8	134.7	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
38.2	99.8	38.8	At3g15620	820804	UVR3 (UV REPAIR DEFECTIVE 3)	Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.	O.I.	C.G.	H.G.
37.2	99.7	160.8	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
37.0	99.7	168.5	At1g58180	842185	carbonic anhydrase family protein / carbonate dehydratase family protein	F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA	O.I.	C.G.	H.G.
37.0	99.7	74.1	At5g22290	832289	anac089 (Arabidopsis NAC domain containing protein 89)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.1	99.7	315.5	At3g62650	825439	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
35.7	99.7	136.9	At4g30550	829178	glutamine amidotransferase class-I domain-containing protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;OBAFPM	O.I.	C.G.	H.G.
35.6	99.7	186.1	At4g34030	829549	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.	O.I.	C.G.	H.G.
35.1	99.7	137.2	At5g63030	836423	glutaredoxin, putative	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOPMFVA	O.I.	C.G.	H.G.
34.0	99.7	128.7	At2g36900	818264	MEMB11 (MEMBRIN 11)	member of Membrin Gene Family	O.I.	C.G.	H.G.
33.2	99.7	192.2	At5g57655	835871	xylose isomerase family protein	F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF	O.I.	C.G.	H.G.
32.6	99.7	75.3	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
31.8	99.7	86.1	At2g40420	818635	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
31.7	99.7	306.8	At4g37300	829885	MEE59 (maternal effect embryo arrest 59)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.7	99.7	24.3	At5g57650	835870	eukaryotic translation initiation factor-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.3	99.7	78.5	At1g33050	840200	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP	O.I.	C.G.	H.G.
31.3	99.7	41.7	At1g09910	837523	lyase	F:lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
31.0	99.7	20.5	At5g04880	3770684	-	pseudogene of ABC transporter family protein	O.I.	C.G.	H.G.
30.9	99.7	315.3	At5g05690	830453	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.	O.I.	C.G.	H.G.
29.4	99.7	33.3	At4g20930	827841	3-hydroxyisobutyrate dehydrogenase, putative	F:in 7 functions;P:pentose-phosphate shunt, valine metabolic process, valine catabolic process, metabolic process;C:unknown;OBMFPAV	O.I.	C.G.	H.G.
29.3	99.7	492.8	At1g62480	842545	vacuolar calcium-binding protein-related	F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
29.0	99.7	239.2	At4g15530	827226	PPDK (pyruvate orthophosphate dikinase)	The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.	O.I.	C.G.	H.G.
29.0	99.7	53.9	At1g05890	837099	zinc finger protein-related	F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
28.2	99.7	125.2	At2g15580	816051	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFBV	O.I.	C.G.	H.G.
27.9	99.7	212.0	At1g53580	841793	GLY3 (GLYOXALASE II 3)	F:hydrolase activity, hydroxyacylglutathione hydrolase activity;P:response to salt stress, methylglyoxal catabolic process to D-lactate;C:unknown;BOMAFP	O.I.	C.G.	H.G.
27.8	99.7	186.4	At2g38400	818421	AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3)	alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,	O.I.	C.G.	H.G.
27.8	99.7	115.8	At4g28260	828941	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.8	99.7	86.7	At1g55810	842031	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
27.6	99.7	176.8	At5g21170	832243	5'-AMP-activated protein kinase beta-2 subunit, putative	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
27.0	99.7	75.5	At5g05930	830478	guanylyl cyclase-related (GC1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOA	O.I.	C.G.	H.G.
26.7	99.7	109.1	At1g45976	841106	SBP1 (s-ribonuclease binding protein 1)	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFB	O.I.	C.G.	H.G.
25.3	99.6	41.7	At1g01725	839271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.1	99.6	605.9	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
25.1	99.6	70.9	At2g38820	818464	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
25.0	99.6	70.5	At2g26430	817183	RCY1 (ARGININE-RICH CYCLIN 1)	Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.	O.I.	C.G.	H.G.
24.9	99.6	206.6	At2g26740	817215	ATSEH (Arabidopsis thaliana soluble epoxide hydrolase)	Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.	O.I.	C.G.	H.G.
24.9	99.6	177.9	At1g77180	844055	chromatin protein family	Encodes a protein with a putative role in mRNA splicing.	O.I.	C.G.	H.G.
24.7	99.6	267.2	At2g14170	815903	ALDH6B2	Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase	O.I.	C.G.	H.G.
23.3	99.6	208.2	At1g16240	838193	SYP51 (SYNTAXIN OF PLANTS 51)	Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.	O.I.	C.G.	H.G.
23.1	99.6	176.4	At4g13530	826985	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.9	99.6	30.3	At5g55790	835673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.6	99.6	29.9	At3g21790	821733	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
22.5	99.6	68.6	At1g26580	839198	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
22.4	99.6	139.1	At3g59930	825163	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
22.3	99.6	30.2	At3g51500	824313	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
22.2	99.6	290.7	At3g51840	824347	ACX4 (ACYL-COA OXIDASE 4)	Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis.	O.I.	C.G.	H.G.
22.2	99.6	153.7	At2g18280	816344	AtTLP2 (TUBBY LIKE PROTEIN 2)	Member of TLP family	O.I.	C.G.	H.G.
22.2	99.6	64.6	At3g11560	820329	unknown protein	F:unknown;P:unknown;C:chloroplast, chloroplast envelope;P	O.I.	C.G.	H.G.
22.2	99.6	30.0	At3g62950	825470	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO	O.I.	C.G.	H.G.
22.1	99.6	18.9	At2g01940	814725	nucleic acid binding / transcription factor/ zinc ion binding	May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.	O.I.	C.G.	H.G.
22.0	99.6	97.1	At2g18050	816317	HIS1-3 (HISTONE H1-3)	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.	O.I.	C.G.	H.G.
21.9	99.6	47.3	At2g26210	817161	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;OMBPFVA	O.I.	C.G.	H.G.
21.7	99.6	100.5	At1g43700	840957	VIP1 (VIRE2-INTERACTING PROTEIN 1)	Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half.	O.I.	C.G.	H.G.
20.9	99.6	211.2	At3g48530	824012	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;BOMAFP	O.I.	C.G.	H.G.
20.9	99.6	157.6	At1g11530	837696	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.	O.I.	C.G.	H.G.
20.8	99.6	166.3	At3g60140	825184	DIN2 (DARK INDUCIBLE 2)	Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
20.8	99.6	54.3	At1g05840	837094	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO	O.I.	C.G.	H.G.
20.7	99.6	54.0	At3g19990	821537	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PBO	O.I.	C.G.	H.G.

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GSM ID	GSM253165
Assay name	48h into an extended nightB
GSE experiment	GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Microarray experiments to specifically-expressed genes

GSM ID GSM253165 Assay name 48h into an extended nightB GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

GSM ID GSM253165

Assay name 48h into an extended nightB

GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night