Microarray experiments to specifically-expressed genes

GSM ID GSM253164
Assay name 24h into an extended nightC
GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
77.999.994.6At1g79700844309ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBO.I.C.G.H.G.
61.399.837.1At4g28860829007ckl4 (Casein Kinase I-like 4)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOBPFVAO.I.C.G.H.G.
57.599.8268.9At5g54080835494HGO (HOMOGENTISATE 1,2-DIOXYGENASE)homogentisate 1,2-dioxygenaseO.I.C.G.H.G.
55.699.896.7At1g76410843974ATL8F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
53.299.848.9At2g42870818887PAR1 (PHY RAPIDLY REGULATED 1)Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).O.I.C.G.H.G.
44.099.8166.7At1g72060843537serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
40.999.8215.3At5g211708322435'-AMP-activated protein kinase beta-2 subunit, putativeF:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOBO.I.C.G.H.G.
40.299.8208.6At1g03090838362MCCAMCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.O.I.C.G.H.G.
38.299.8249.2At5g16030831460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
37.499.782.5At1g54740841915-F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBFO.I.C.G.H.G.
36.599.7128.3At1g26665839207-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
36.599.7120.8At2g42580818858TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3)Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling.O.I.C.G.H.G.
36.099.770.7At1g22740838880RABG3BGTP-binding protein Rab7O.I.C.G.H.G.
32.499.762.5At4g16780827384ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.O.I.C.G.H.G.
30.199.734.8At5g55790835673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.999.793.9At2g42890818890AML2 (ARABIDOPSIS-MEI2-LIKE 2)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.O.I.C.G.H.G.
29.899.776.6At1g33050840200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPO.I.C.G.H.G.
29.399.7122.7At3g13450820547DIN4 (DARK INDUCIBLE 4)branched chain alpha-keto acid dehydrogenase E1 betaO.I.C.G.H.G.
29.399.7120.4At1g30250839905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
28.799.7381.9At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
28.599.744.5At4g23870828486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.299.742.6At2g40670818662ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)response regulator 16O.I.C.G.H.G.
27.599.771.6At5g23050832369AAE17 (ACYL-ACTIVATING ENZYME 17)F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
26.499.7132.1At1g64660842774ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.O.I.C.G.H.G.
26.199.7114.0At4g36730829826GBF1member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-boxO.I.C.G.H.G.
25.899.7298.7At5g16110831468unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
25.899.7264.9At1g28330839729DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)dormancy-associated protein (DRM1)O.I.C.G.H.G.
25.699.770.4At1g19540838541isoflavone reductase, putativeF:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMAO.I.C.G.H.G.
25.499.6107.7At2g22980816829serine-type carboxypeptidaseF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
24.599.618.4At5g67190836854AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
24.499.6258.2At2g20670816595unknown proteinF:unknown;P:unknown;C:chloroplast;POO.I.C.G.H.G.
23.699.680.8At3g17100820967transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PMO.I.C.G.H.G.
23.599.6134.1At1g58180842185carbonic anhydrase family protein / carbonate dehydratase family proteinF:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMAO.I.C.G.H.G.
23.499.6169.8At1g06570837168PDS1 (PHYTOENE DESATURATION 1)Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.O.I.C.G.H.G.
22.399.6264.7At1g12780837834UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.O.I.C.G.H.G.
22.399.6101.3At3g51000824264epoxide hydrolase, putativeF:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMFPAVO.I.C.G.H.G.
22.399.620.3At4g12690826881unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.647.8At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAO.I.C.G.H.G.
21.599.644.7At5g02150831805bindingF:binding;P:unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
21.299.616.2At3g29670822645transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
21.099.615.6At3g29370822596unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.999.6152.6At5g57655835871xylose isomerase family proteinF:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMFO.I.C.G.H.G.
20.799.698.8At2g18440816358GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15)Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product.O.I.C.G.H.G.
20.699.698.8At1g03610838961unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
20.699.649.2At3g03870821099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
20.599.657.0At4g01330828117ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
20.399.642.6At1g67050843025unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBVO.I.C.G.H.G.
19.999.645.5At3g55500824715ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
19.999.622.8At2g36050818178OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)F:unknown;P:unknown;C:chloroplast;POO.I.C.G.H.G.
19.699.6258.5At3g61260825298DNA-binding family protein / remorin family proteinF:binding;P:biological_process unknown;C:plasma membrane, vacuole;OBMFPVAO.I.C.G.H.G.
19.399.623.5At2g01930814724BPC1 (BASIC PENTACYSTEINE1)BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.O.I.C.G.H.G.
19.199.6527.8At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
19.199.6398.3At1g62480842545vacuolar calcium-binding protein-relatedF:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVAO.I.C.G.H.G.
19.099.5126.5At1g22890838896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.099.568.9At2g47930819405AGP26 (ARABINOGALACTAN PROTEIN 26)F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFAO.I.C.G.H.G.
18.999.5114.6At5g24800832549BZIP9 (BASIC LEUCINE ZIPPER 9)Encodes bZIP protein BZO2H2.O.I.C.G.H.G.
18.999.516.0At5g048803770684-pseudogene of ABC transporter family proteinO.I.C.G.H.G.
18.599.553.8At4g16690827371MES16 (METHYL ESTERASE 16)Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.O.I.C.G.H.G.
18.599.549.0At1g28960839773ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)F:hydrolase activity, CoA pyrophosphatase activity (sent to SF);P:biological_process unknown;C:mitochondrion;BOMFPAO.I.C.G.H.G.
18.599.527.0At3g15620820804UVR3 (UV REPAIR DEFECTIVE 3)Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.O.I.C.G.H.G.
18.399.543.7At3g05640819731protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation;C:cellular_component unknown;PMOFVO.I.C.G.H.G.
17.799.539.7At3g15780820821unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.299.5272.5At3g57520824919AtSIP2 (Arabidopsis thaliana seed imbibition 2)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOO.I.C.G.H.G.
17.199.5289.9At3g13750820584BGAL1 (Beta galactosidase 1)beta-galactosidase, glycosyl hydrolase family 35O.I.C.G.H.G.
17.199.5243.1At3g48360823994BT2 (BTB AND TAZ DOMAIN PROTEIN 2)encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.O.I.C.G.H.G.
17.199.5145.5At2g25900817131ATCTHputative Cys3His zinc finger protein (ATCTH) mRNA, completeO.I.C.G.H.G.
17.099.580.9At3g51880824351HMGB1 (HIGH MOBILITY GROUP B 1)Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.O.I.C.G.H.G.
17.099.535.8At5g57910835902unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
16.899.526.1At3g62950825470glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFOO.I.C.G.H.G.
16.799.597.2At1g07040837215unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
16.699.565.2At1g214008387392-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putativeF:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
16.699.548.5At1g05840837094aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOO.I.C.G.H.G.
16.699.545.7At5g57340835839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAO.I.C.G.H.G.
16.699.544.7At3g02340821090zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVABO.I.C.G.H.G.
16.599.567.6At4g15780827258ATVAMP724member of VAMP72 Gene FamilyO.I.C.G.H.G.
16.499.5277.6At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFO.I.C.G.H.G.
16.499.5164.9At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
16.199.5218.7At4g37300829885MEE59 (maternal effect embryo arrest 59)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
16.199.5210.8At3g62650825439unknown proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
16.199.573.4At5g35330833487MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.O.I.C.G.H.G.
16.099.536.3At5g27950832864kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBO.I.C.G.H.G.
15.999.573.3At5g45360834572F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.C.G.H.G.
15.699.5190.4At3g22960821870PKP-ALPHAencodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.O.I.C.G.H.G.
15.699.531.5At5g61330836254rRNA processing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:nucleus;MOBFPVAO.I.C.G.H.G.
15.599.572.3At3g29575822619AFP3 (ABI FIVE BINDING PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
15.399.4222.1At5g05690830453CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.O.I.C.G.H.G.
15.399.459.7At2g40420818635amino acid transporter family proteinEncodes a putative amino acid transporter.O.I.C.G.H.G.
15.399.424.9At1g36070840511WD-40 repeat family proteinF:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPAO.I.C.G.H.G.
15.299.459.5At3g49790824141ATP bindingF:ATP binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
15.299.419.6At1g31350840024F-box family proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
15.199.498.1At3g45300823668IVD (ISOVALERYL-COA-DEHYDROGENASE)Encodes isovaleryl-coenzyme a dehydrogenase.O.I.C.G.H.G.
15.199.489.1At4g30550829178glutamine amidotransferase class-I domain-containing proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;OBAFPMO.I.C.G.H.G.
14.999.4207.7At2g14170815903ALDH6B2Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenaseO.I.C.G.H.G.
14.999.474.4At2g01100814639unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
14.899.4109.5At1g68440843173unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.C.G.H.G.
14.799.4125.5At1g10070837543ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
14.799.447.5At3g19860821523basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBVO.I.C.G.H.G.
14.699.4102.4At4g37550829910formamidase, putative / formamide amidohydrolase, putativeF:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAPO.I.C.G.H.G.
14.599.462.7At1g55810842031uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeF:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
14.499.449.9At1g30200839900F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage