CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM253162

Assay name 8h into an extended nightB

GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
123.2 99.9 70.6 At3g62950 825470 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO O.I. C.G. H.G.
66.2 99.8 267.4 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
65.7 99.8 203.7 At1g72060 843537 serine-type endopeptidase inhibitor F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
61.5 99.8 278.2 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase O.I. C.G. H.G.
52.2 99.8 52.0 At5g55700 835664 BAM4 (BETA-AMYLASE 4) In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role. O.I. C.G. H.G.
42.9 99.8 282.3 At2g29670 817517 binding F:binding;P:unknown;C:chloroplast;PBOAM O.I. C.G. H.G.
42.9 99.8 63.4 At2g43400 818941 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. O.I. C.G. H.G.
42.5 99.8 69.9 At1g79700 844309 ovule development protein, putative F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
41.0 99.8 102.4 At1g21400 838739 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
37.7 99.7 438.2 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
36.8 99.7 78.6 At1g76410 843974 ATL8 F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
34.6 99.7 206.6 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. O.I. C.G. H.G.
34.1 99.7 132.3 At3g13450 820547 DIN4 (DARK INDUCIBLE 4) branched chain alpha-keto acid dehydrogenase E1 beta O.I. C.G. H.G.
33.5 99.7 146.3 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
32.9 99.7 25.0 At4g15700 827247 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
31.4 99.7 183.4 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
30.7 99.7 25.7 At4g15690 827246 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
28.1 99.7 126.1 At1g07040 837215 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
28.0 99.7 108.1 At5g53970 835480 aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment O.I. C.G. H.G.
27.8 99.7 57.6 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
25.8 99.7 51.6 At3g61210 825293 embryo-abundant protein-related F:unknown;P:unknown;C:cellular_component unknown;BPFOMA O.I. C.G. H.G.
25.7 99.7 113.0 At4g36730 829826 GBF1 member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box O.I. C.G. H.G.
23.8 99.6 589.2 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
23.6 99.6 105.6 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
23.3 99.6 103.1 At2g22980 816829 serine-type carboxypeptidase F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
21.8 99.6 47.6 At3g55500 824715 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
21.7 99.6 130.9 At2g30600 817610 BTB/POZ domain-containing protein F:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
21.3 99.6 57.3 At3g06080 819781 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.0 99.6 321.3 At3g13750 820584 BGAL1 (Beta galactosidase 1) beta-galactosidase, glycosyl hydrolase family 35 O.I. C.G. H.G.
20.9 99.6 59.5 At3g21870 821742 CYCP2 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
20.9 99.6 36.9 At4g15680 827245 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB O.I. C.G. H.G.
20.1 99.6 149.4 At5g57655 835871 xylose isomerase family protein F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF O.I. C.G. H.G.
19.6 99.6 91.6 At4g03510 825654 RMA1 RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. O.I. C.G. H.G.
19.4 99.6 72.2 At1g55510 841998 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) branched-chain alpha-keto acid decarboxylase E1 beta O.I. C.G. H.G.
18.9 99.5 112.8 At5g18170 831935 GDH1 (GLUTAMATE DEHYDROGENASE 1) Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. O.I. C.G. H.G.
18.7 99.5 37.0 At1g28260 839720 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
18.6 99.5 145.1 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB O.I. C.G. H.G.
18.5 99.5 174.9 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
18.4 99.5 41.4 At5g02150 831805 binding F:binding;P:unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
18.3 99.5 172.4 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
18.3 99.5 118.4 At1g58180 842185 carbonic anhydrase family protein / carbonate dehydratase family protein F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA O.I. C.G. H.G.
18.2 99.5 27.3 At4g15660 827243 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
18.1 99.5 46.7 At4g16780 827384 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. O.I. C.G. H.G.
18.0 99.5 237.6 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. C.G. H.G.
17.1 99.5 99.0 At3g59060 825075 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B. O.I. C.G. H.G.
16.5 99.5 48.3 At1g05840 837094 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO O.I. C.G. H.G.
16.1 99.5 13.5 At2g29680 817518 CDC6 (CELL DIVISION CONTROL 6) Encodes cell division control protein 6 (CDC6). O.I. C.G. H.G.
15.3 99.4 114.7 At1g74910 843830 ADP-glucose pyrophosphorylase family protein F:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:peroxisome;BOAMPF O.I. C.G. H.G.
15.1 99.4 17.7 At4g10910 826689 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.6 99.4 83.8 At4g28260 828941 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.3 99.4 97.3 At1g64660 842774 ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis. O.I. C.G. H.G.
14.0 99.4 212.1 At5g05690 830453 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses. O.I. C.G. H.G.
13.7 99.4 112.2 At5g06980 830589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
13.7 99.4 24.8 At2g42870 818887 PAR1 (PHY RAPIDLY REGULATED 1) Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510). O.I. C.G. H.G.
13.6 99.4 252.7 At5g19120 832032 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF O.I. C.G. H.G.
13.6 99.4 227.1 At3g51840 824347 ACX4 (ACYL-COA OXIDASE 4) Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis. O.I. C.G. H.G.
13.6 99.4 45.3 At5g64240 836545 AtMC3 (metacaspase 3) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPA O.I. C.G. H.G.
13.5 99.4 78.7 At3g51000 824264 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
13.3 99.4 51.5 At2g38820 818464 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
13.2 99.4 15.6 At4g12690 826881 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.0 99.4 285.7 At2g15960 816091 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.0 99.4 27.2 At4g18740 827608 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF O.I. C.G. H.G.
12.9 99.3 312.2 At5g02160 831910 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P O.I. C.G. H.G.
12.9 99.3 20.0 At5g52910 835368 ATIM (TIMELESS) homolog of Drosophila timeless O.I. C.G. H.G.
12.8 99.3 164.9 At5g18600 831978 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
12.6 99.3 110.6 At4g34030 829549 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. O.I. C.G. H.G.
12.6 99.3 54.2 At2g40420 818635 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
12.6 99.3 35.3 At1g27150 839604 binding F:binding;P:biological_process unknown;C:cellular_component unknown;BOMPA O.I. C.G. H.G.
12.5 99.3 146.7 At3g16670 820919 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
12.4 99.3 110.7 At4g19160 827654 unknown protein F:unknown;P:biological_process unknown;C:unknown;BPOM O.I. C.G. H.G.
12.2 99.3 121.8 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. O.I. C.G. H.G.
12.2 99.3 46.8 At2g17880 816298 DNAJ heat shock protein, putative F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
12.1 99.3 278.8 At5g22920 832356 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBA O.I. C.G. H.G.
12.1 99.3 186.6 At2g14170 815903 ALDH6B2 Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase O.I. C.G. H.G.
12.0 99.3 317.5 At1g80920 844432 J8 J8 mRNA, nuclear gene encoding plastid protein, complete O.I. C.G. H.G.
11.9 99.3 144.0 At1g21920 838794 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPF O.I. C.G. H.G.
11.9 99.3 51.6 At2g25200 817058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.8 99.3 12.8 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
11.7 99.3 306.2 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
11.7 99.3 139.4 At2g31810 817738 acetolactate synthase small subunit, putative F:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAP O.I. C.G. H.G.
11.7 99.3 137.4 At1g53580 841793 GLY3 (GLYOXALASE II 3) F:hydrolase activity, hydroxyacylglutathione hydrolase activity;P:response to salt stress, methylglyoxal catabolic process to D-lactate;C:unknown;BOMAFP O.I. C.G. H.G.
11.7 99.3 120.3 At2g25900 817131 ATCTH putative Cys3His zinc finger protein (ATCTH) mRNA, complete O.I. C.G. H.G.
11.6 99.3 200.5 At3g48360 823994 BT2 (BTB AND TAZ DOMAIN PROTEIN 2) encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. O.I. C.G. H.G.
11.6 99.3 39.8 At3g52070 824370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
11.4 99.3 47.8 At5g18140 831932 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV O.I. C.G. H.G.
11.3 99.3 64.4 At1g72820 843613 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
11.2 99.2 57.6 At2g42890 818890 AML2 (ARABIDOPSIS-MEI2-LIKE 2) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices. O.I. C.G. H.G.
11.2 99.2 24.1 At1g68190 843148 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
11.1 99.2 106.7 At1g60010 842295 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO O.I. C.G. H.G.
11.1 99.2 74.4 At3g47295 823883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.1 99.2 41.4 At3g19860 821523 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV O.I. C.G. H.G.
10.8 99.2 54.6 At3g23080 821882 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
10.8 99.2 42.9 At2g39000 818486 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOAFM O.I. C.G. H.G.
10.7 99.2 229.1 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
10.7 99.2 174.6 At1g80440 844383 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFA O.I. C.G. H.G.
10.7 99.2 39.4 At1g18620 838443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
10.7 99.2 12.1 At5g04880 3770684 - pseudogene of ABC transporter family protein O.I. C.G. H.G.
10.5 99.2 64.0 At1g14280 837989 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. O.I. C.G. H.G.
10.4 99.2 216.2 At5g51970 835272 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro. O.I. C.G. H.G.
10.4 99.2 35.4 At3g02340 821090 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVAB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
123.2	99.9	70.6	At3g62950	825470	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO	O.I.	C.G.	H.G.
66.2	99.8	267.4	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
65.7	99.8	203.7	At1g72060	843537	serine-type endopeptidase inhibitor	F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
61.5	99.8	278.2	At5g54080	835494	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	homogentisate 1,2-dioxygenase	O.I.	C.G.	H.G.
52.2	99.8	52.0	At5g55700	835664	BAM4 (BETA-AMYLASE 4)	In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role.	O.I.	C.G.	H.G.
42.9	99.8	282.3	At2g29670	817517	binding	F:binding;P:unknown;C:chloroplast;PBOAM	O.I.	C.G.	H.G.
42.9	99.8	63.4	At2g43400	818941	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods.	O.I.	C.G.	H.G.
42.5	99.8	69.9	At1g79700	844309	ovule development protein, putative	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
41.0	99.8	102.4	At1g21400	838739	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
37.7	99.7	438.2	At3g47340	823888	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
36.8	99.7	78.6	At1g76410	843974	ATL8	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
34.6	99.7	206.6	At1g06570	837168	PDS1 (PHYTOENE DESATURATION 1)	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	O.I.	C.G.	H.G.
34.1	99.7	132.3	At3g13450	820547	DIN4 (DARK INDUCIBLE 4)	branched chain alpha-keto acid dehydrogenase E1 beta	O.I.	C.G.	H.G.
33.5	99.7	146.3	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
32.9	99.7	25.0	At4g15700	827247	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
31.4	99.7	183.4	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
30.7	99.7	25.7	At4g15690	827246	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
28.1	99.7	126.1	At1g07040	837215	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
28.0	99.7	108.1	At5g53970	835480	aminotransferase, putative	encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment	O.I.	C.G.	H.G.
27.8	99.7	57.6	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
25.8	99.7	51.6	At3g61210	825293	embryo-abundant protein-related	F:unknown;P:unknown;C:cellular_component unknown;BPFOMA	O.I.	C.G.	H.G.
25.7	99.7	113.0	At4g36730	829826	GBF1	member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box	O.I.	C.G.	H.G.
23.8	99.6	589.2	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
23.6	99.6	105.6	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
23.3	99.6	103.1	At2g22980	816829	serine-type carboxypeptidase	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
21.8	99.6	47.6	At3g55500	824715	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
21.7	99.6	130.9	At2g30600	817610	BTB/POZ domain-containing protein	F:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
21.3	99.6	57.3	At3g06080	819781	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.0	99.6	321.3	At3g13750	820584	BGAL1 (Beta galactosidase 1)	beta-galactosidase, glycosyl hydrolase family 35	O.I.	C.G.	H.G.
20.9	99.6	59.5	At3g21870	821742	CYCP2	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
20.9	99.6	36.9	At4g15680	827245	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
20.1	99.6	149.4	At5g57655	835871	xylose isomerase family protein	F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF	O.I.	C.G.	H.G.
19.6	99.6	91.6	At4g03510	825654	RMA1	RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.	O.I.	C.G.	H.G.
19.4	99.6	72.2	At1g55510	841998	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	branched-chain alpha-keto acid decarboxylase E1 beta	O.I.	C.G.	H.G.
18.9	99.5	112.8	At5g18170	831935	GDH1 (GLUTAMATE DEHYDROGENASE 1)	Encodes the 43 kDa alpha-subunit of the glutamate dehydrogenase with a putative mitochondrial transit polypeptide and NAD(H)- and alpha-ketoglutarate-binding domains. Mitochondrial localization confirmed by subcellular fractionation. Combines in several ratios with GDH2 protein (GDH-beta) to form seven isoenzymes. Catalyzes the cleavage of glycine residues. May be involved in ammonia assimilation under conditions of inorganic nitrogen excess. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.	O.I.	C.G.	H.G.
18.7	99.5	37.0	At1g28260	839720	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
18.6	99.5	145.1	At5g21170	832243	5'-AMP-activated protein kinase beta-2 subunit, putative	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
18.5	99.5	174.9	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
18.4	99.5	41.4	At5g02150	831805	binding	F:binding;P:unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
18.3	99.5	172.4	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
18.3	99.5	118.4	At1g58180	842185	carbonic anhydrase family protein / carbonate dehydratase family protein	F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA	O.I.	C.G.	H.G.
18.2	99.5	27.3	At4g15660	827243	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
18.1	99.5	46.7	At4g16780	827384	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.	O.I.	C.G.	H.G.
18.0	99.5	237.6	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	C.G.	H.G.
17.1	99.5	99.0	At3g59060	825075	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	O.I.	C.G.	H.G.
16.5	99.5	48.3	At1g05840	837094	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO	O.I.	C.G.	H.G.
16.1	99.5	13.5	At2g29680	817518	CDC6 (CELL DIVISION CONTROL 6)	Encodes cell division control protein 6 (CDC6).	O.I.	C.G.	H.G.
15.3	99.4	114.7	At1g74910	843830	ADP-glucose pyrophosphorylase family protein	F:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:peroxisome;BOAMPF	O.I.	C.G.	H.G.
15.1	99.4	17.7	At4g10910	826689	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.6	99.4	83.8	At4g28260	828941	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.3	99.4	97.3	At1g64660	842774	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.	O.I.	C.G.	H.G.
14.0	99.4	212.1	At5g05690	830453	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.	O.I.	C.G.	H.G.
13.7	99.4	112.2	At5g06980	830589	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
13.7	99.4	24.8	At2g42870	818887	PAR1 (PHY RAPIDLY REGULATED 1)	Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).	O.I.	C.G.	H.G.
13.6	99.4	252.7	At5g19120	832032	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF	O.I.	C.G.	H.G.
13.6	99.4	227.1	At3g51840	824347	ACX4 (ACYL-COA OXIDASE 4)	Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis.	O.I.	C.G.	H.G.
13.6	99.4	45.3	At5g64240	836545	AtMC3 (metacaspase 3)	F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPA	O.I.	C.G.	H.G.
13.5	99.4	78.7	At3g51000	824264	epoxide hydrolase, putative	F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
13.3	99.4	51.5	At2g38820	818464	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
13.2	99.4	15.6	At4g12690	826881	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.0	99.4	285.7	At2g15960	816091	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.0	99.4	27.2	At4g18740	827608	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF	O.I.	C.G.	H.G.
12.9	99.3	312.2	At5g02160	831910	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;P	O.I.	C.G.	H.G.
12.9	99.3	20.0	At5g52910	835368	ATIM (TIMELESS)	homolog of Drosophila timeless	O.I.	C.G.	H.G.
12.8	99.3	164.9	At5g18600	831978	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
12.6	99.3	110.6	At4g34030	829549	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.	O.I.	C.G.	H.G.
12.6	99.3	54.2	At2g40420	818635	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
12.6	99.3	35.3	At1g27150	839604	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;BOMPA	O.I.	C.G.	H.G.
12.5	99.3	146.7	At3g16670	820919	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
12.4	99.3	110.7	At4g19160	827654	unknown protein	F:unknown;P:biological_process unknown;C:unknown;BPOM	O.I.	C.G.	H.G.
12.2	99.3	121.8	At1g09570	837483	PHYA (PHYTOCHROME A)	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.	O.I.	C.G.	H.G.
12.2	99.3	46.8	At2g17880	816298	DNAJ heat shock protein, putative	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
12.1	99.3	278.8	At5g22920	832356	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBA	O.I.	C.G.	H.G.
12.1	99.3	186.6	At2g14170	815903	ALDH6B2	Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase	O.I.	C.G.	H.G.
12.0	99.3	317.5	At1g80920	844432	J8	J8 mRNA, nuclear gene encoding plastid protein, complete	O.I.	C.G.	H.G.
11.9	99.3	144.0	At1g21920	838794	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPF	O.I.	C.G.	H.G.
11.9	99.3	51.6	At2g25200	817058	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.8	99.3	12.8	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
11.7	99.3	306.2	At5g49360	834996	BXL1 (BETA-XYLOSIDASE 1)	Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
11.7	99.3	139.4	At2g31810	817738	acetolactate synthase small subunit, putative	F:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAP	O.I.	C.G.	H.G.
11.7	99.3	137.4	At1g53580	841793	GLY3 (GLYOXALASE II 3)	F:hydrolase activity, hydroxyacylglutathione hydrolase activity;P:response to salt stress, methylglyoxal catabolic process to D-lactate;C:unknown;BOMAFP	O.I.	C.G.	H.G.
11.7	99.3	120.3	At2g25900	817131	ATCTH	putative Cys3His zinc finger protein (ATCTH) mRNA, complete	O.I.	C.G.	H.G.
11.6	99.3	200.5	At3g48360	823994	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.	O.I.	C.G.	H.G.
11.6	99.3	39.8	At3g52070	824370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.4	99.3	47.8	At5g18140	831932	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
11.3	99.3	64.4	At1g72820	843613	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
11.2	99.2	57.6	At2g42890	818890	AML2 (ARABIDOPSIS-MEI2-LIKE 2)	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.	O.I.	C.G.	H.G.
11.2	99.2	24.1	At1g68190	843148	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
11.1	99.2	106.7	At1g60010	842295	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
11.1	99.2	74.4	At3g47295	823883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.1	99.2	41.4	At3g19860	821523	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV	O.I.	C.G.	H.G.
10.8	99.2	54.6	At3g23080	821882	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
10.8	99.2	42.9	At2g39000	818486	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:chloroplast;BPOAFM	O.I.	C.G.	H.G.
10.7	99.2	229.1	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
10.7	99.2	174.6	At1g80440	844383	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFA	O.I.	C.G.	H.G.
10.7	99.2	39.4	At1g18620	838443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
10.7	99.2	12.1	At5g04880	3770684	-	pseudogene of ABC transporter family protein	O.I.	C.G.	H.G.
10.5	99.2	64.0	At1g14280	837989	PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)	Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.	O.I.	C.G.	H.G.
10.4	99.2	216.2	At5g51970	835272	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.	O.I.	C.G.	H.G.
10.4	99.2	35.4	At3g02340	821090	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVAB	O.I.	C.G.	H.G.

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GSM ID	GSM253162
Assay name	8h into an extended nightB
GSE experiment	GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Microarray experiments to specifically-expressed genes

GSM ID GSM253162 Assay name 8h into an extended nightB GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

GSM ID GSM253162

Assay name 8h into an extended nightB

GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night