Microarray experiments to specifically-expressed genes

GSM ID GSM253157
Assay name 2h into an extended night
GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
112.999.9132.7At5g17300831595myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVBO.I.C.G.H.G.
91.099.968.0At5g22390832300unknown proteinF:unknown;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
79.899.964.9At5g39660833962CDF2 (CYCLING DOF FACTOR 2)Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.O.I.C.G.H.G.
74.399.9216.5At3g02380821298COL2 (constans-like 2)homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteinsO.I.C.G.H.G.
54.199.8169.5At2g41250818724haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPFO.I.C.G.H.G.
47.799.8163.0At5g18670831985BMY3putative beta-amylase BMY3 (BMY3)O.I.C.G.H.G.
47.199.881.1At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
39.599.818.5At3g09600820117myb family transcription factorF:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOFO.I.C.G.H.G.
36.999.726.5At4g15700827247glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
32.499.726.9At4g15430827214-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOO.I.C.G.H.G.
31.299.735.5At3g62950825470glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFOO.I.C.G.H.G.
31.099.7132.9At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
29.799.725.2At4g15690827246glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
28.999.772.5At1g54740841915-F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBFO.I.C.G.H.G.
28.499.719.9At1g29460839822auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;PO.I.C.G.H.G.
28.299.7106.2At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
28.099.7150.4At1g68440843173unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBO.I.C.G.H.G.
27.299.7158.3At5g06980830589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
27.299.739.4At4g18740827608transcription termination factorF:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVFO.I.C.G.H.G.
26.199.7164.2At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
25.799.751.5At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAO.I.C.G.H.G.
23.499.6131.9At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
22.699.629.5At1g29720839850protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
22.099.635.9At1g49200841343zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
21.399.687.9At1g42550840860PMI1 (PLASTID MOVEMENT IMPAIRED1)Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.O.I.C.G.H.G.
20.899.6113.0At3g17510821016CIPK1 (CBL-INTERACTING PROTEIN KINASE 1)Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.O.I.C.G.H.G.
19.699.6190.7At2g29670817517bindingF:binding;P:unknown;C:chloroplast;PBOAMO.I.C.G.H.G.
19.199.635.3At4g15680827245glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOBO.I.C.G.H.G.
19.099.5145.0At4g37610829915BT5 (BTB AND TAZ DOMAIN PROTEIN 5)BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.O.I.C.G.H.G.
18.799.552.7At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
18.699.5102.5At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.O.I.C.G.H.G.
18.599.565.7At5g59750836096riboflavin biosynthesis protein, putativeF:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAPO.I.C.G.H.G.
18.099.572.6At5g17670831633hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
17.499.554.2At3g21870821742CYCP2F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
16.899.534.6At1g69570843293Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
16.699.59.4At4g19820827726glycosyl hydrolase family 18 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;MBFOVPAO.I.C.G.H.G.
16.399.5175.3At1g01060839341LHY (LATE ELONGATED HYPOCOTYL)LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1O.I.C.G.H.G.
15.699.5277.2At3g13750820584BGAL1 (Beta galactosidase 1)beta-galactosidase, glycosyl hydrolase family 35O.I.C.G.H.G.
15.599.551.4At5g43700834390ATAUX2-11 (AUXIN INDUCIBLE 2-11)Auxin inducible protein similar to transcription factors.O.I.C.G.H.G.
14.799.4145.3At5g02840831766LCL1 (LHY/CCA1-like 1)CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
14.599.441.6At2g32870817848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
14.299.495.2At5g13770831222pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMABO.I.C.G.H.G.
14.199.492.0At3g12320820411unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
14.199.434.3At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
14.099.462.4At5g28770832990BZO2H3bZIP protein BZO2H3 mRNA, partial cdsO.I.C.G.H.G.
14.099.413.5At4g19510827692disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFAO.I.C.G.H.G.
13.899.450.1At2g03730814900ACR5Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding.O.I.C.G.H.G.
13.799.439.6At1g79700844309ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBO.I.C.G.H.G.
13.699.445.9At3g06080819781unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.399.420.2At5g56860835788GNC (GATA, nitrate-inducible, carbon metabolism-involved)F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMBO.I.C.G.H.G.
13.299.423.2At4g15660827243glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
13.099.438.1At1g66130842927oxidoreductase N-terminal domain-containing proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAPO.I.C.G.H.G.
12.899.3144.2At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
12.899.367.2At2g04795815023unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
12.899.343.9At1g75100843847JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.O.I.C.G.H.G.
12.899.337.5At2g43330818934INT1 (INOSITOL TRANSPORTER 1)Encodes a tonoplast-localized myo-inositol exporter, involved in efflux of myo-inositol from the vacuole to the cytosol. The gene is ubiquitously expressed. Reduced root growth in knock-out mutants grown on low inositol agar medium.O.I.C.G.H.G.
12.599.3231.9At3g57520824919AtSIP2 (Arabidopsis thaliana seed imbibition 2)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOO.I.C.G.H.G.
12.099.352.0At1g06830837195glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
11.899.350.1At2g35800818153mitochondrial substrate carrier family proteinF:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, chloroplast envelope;MFPOO.I.C.G.H.G.
11.799.354.3At1g10150837552carbohydrate bindingF:carbohydrate binding;P:unknown;C:mitochondrion;PBOO.I.C.G.H.G.
11.799.324.6At1g68190843148zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
11.699.342.9At4g01330828117ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
11.699.322.2At5g42680834277unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.699.316.7At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
11.599.333.6At1g15180838084MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
11.599.37.0At5g04190830297PKS4 (phytochrome kinase substrate 4)Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.O.I.C.G.H.G.
11.499.330.4At1g68020843130ATTPS6Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme.O.I.C.G.H.G.
11.399.366.0At3g14770820705nodulin MtN3 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
11.399.351.2At1g62960842598ACS10 (ACC SYNTHASE 10)Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.O.I.C.G.H.G.
11.199.262.7At4g19530827695disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.O.I.C.G.H.G.
11.199.240.8At5g64240836545AtMC3 (metacaspase 3)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPAO.I.C.G.H.G.
10.999.2210.4At1g66100842924thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
10.999.228.2At3g17650821032YSL5 (YELLOW STRIPE LIKE 5)Arabidopsis thaliana metal-nicotianamine transporter YSL5O.I.C.G.H.G.
10.899.2221.4At1g23390838947kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
10.699.251.5At3g22420821810WNK2 (WITH NO K 2)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.O.I.C.G.H.G.
10.699.214.0At4g12690826881unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.599.2177.7At2g30520817601RPT2 (ROOT PHOTOTROPISM 2)light inducible root phototropism 2 encoding a signal transducer of the phototropic response in ArabidopsisO.I.C.G.H.G.
10.599.2173.5At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyO.I.C.G.H.G.
10.499.2114.5At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
10.399.2188.7At3g48360823994BT2 (BTB AND TAZ DOMAIN PROTEIN 2)encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.O.I.C.G.H.G.
10.399.2108.2At5g211708322435'-AMP-activated protein kinase beta-2 subunit, putativeF:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOBO.I.C.G.H.G.
10.399.286.0At4g37550829910formamidase, putative / formamide amidohydrolase, putativeF:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:vacuole;BOFAPO.I.C.G.H.G.
10.299.223.0At1g73660843701protein kinase family proteinEncodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.O.I.C.G.H.G.
10.299.216.6At4g26150828721CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOMO.I.C.G.H.G.
9.899.144.0At3g57040824871ARR9 (RESPONSE REGULATOR 9)response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2O.I.C.G.H.G.
9.899.138.3At2g33250817887unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
9.899.117.1At1g64490842757unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
9.699.1165.3At2g38210818400PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPMO.I.C.G.H.G.
9.699.136.5At4g16990827407RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3)F:transmembrane receptor activity, ATP binding;P:defense response to fungus, incompatible interaction, jasmonic acid and ethylene-dependent systemic resistance, callose deposition during defense response, defense response;C:intrinsic to membrane;PMBO.I.C.G.H.G.
9.699.18.5At5g46260834668disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVAO.I.C.G.H.G.
9.499.173.4At3g59060825075PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.O.I.C.G.H.G.
9.499.130.1At4g31310829258avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;OPFBAO.I.C.G.H.G.
9.399.1208.5At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFO.I.C.G.H.G.
9.299.165.3At3g02690821274integral membrane family proteinF:unknown;P:unknown;C:chloroplast, membrane;BOAPMFO.I.C.G.H.G.
9.299.162.8At2g03750814902sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBFO.I.C.G.H.G.
9.299.134.6At2g21650816703MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
9.199.1107.8At1g44446841029CH1 (CHLORINA 1)Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.O.I.C.G.H.G.
9.199.121.5At2g15020815991unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
8.999.067.5At2g48020819414sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, chloroplast, vacuole, membrane;BMFPOAVO.I.C.G.H.G.
8.999.023.1At4g35780829731protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation, metabolic process;C:unknown;MPOBFVAO.I.C.G.H.G.



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