CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM253154

Assay name end of the night A

GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
57.0 99.8 57.8 At1g49200 841343 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
39.6 99.8 158.0 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
34.8 99.7 42.0 At5g22390 832300 unknown protein F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
33.9 99.7 72.7 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.
29.5 99.7 128.2 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
24.8 99.6 23.5 At4g15430 827214 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
21.9 99.6 13.7 At3g09600 820117 myb family transcription factor F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF O.I. C.G. H.G.
20.0 99.6 32.4 At5g39660 833962 CDF2 (CYCLING DOF FACTOR 2) Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. O.I. C.G. H.G.
19.6 99.6 19.5 At3g15310 820762 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
19.1 99.6 51.7 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
18.6 99.5 99.4 At2g41250 818724 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF O.I. C.G. H.G.
18.0 99.5 84.8 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
16.4 99.5 49.4 At2g33250 817887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
16.0 99.5 173.4 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 O.I. C.G. H.G.
16.0 99.5 30.2 At4g18740 827608 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF O.I. C.G. H.G.
15.7 99.5 59.6 At1g06830 837195 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
15.3 99.4 90.0 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
14.7 99.4 91.1 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
14.1 99.4 93.1 At3g17510 821016 CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2. O.I. C.G. H.G.
13.8 99.4 29.8 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.
13.2 99.4 137.7 At5g02840 831766 LCL1 (LHY/CCA1-like 1) CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
13.2 99.4 62.3 At5g17670 831633 hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOP O.I. C.G. H.G.
12.4 99.3 88.7 At5g13770 831222 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB O.I. C.G. H.G.
12.3 99.3 83.9 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
11.7 99.3 21.2 At1g29720 839850 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
11.5 99.3 46.1 At5g64280 836549 DiT2.2 (dicarboxylate transporter 2.2) F:oxoglutarate:malate antiporter activity;P:malate transport, sodium ion transport;C:chloroplast, membrane;BOPAFMV O.I. C.G. H.G.
11.5 99.3 43.9 At5g54130 835500 - - O.I. C.G. H.G.
11.5 99.3 41.3 At1g29430 839819 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
11.4 99.3 51.7 At5g59750 836096 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP O.I. C.G. H.G.
10.8 99.2 50.1 At1g62960 842598 ACS10 (ACC SYNTHASE 10) Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity. O.I. C.G. H.G.
10.8 99.2 32.5 At1g15180 838084 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
10.6 99.2 40.2 At4g27030 828811 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV O.I. C.G. H.G.
9.8 99.1 59.6 At1g42550 840860 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. O.I. C.G. H.G.
9.8 99.1 42.0 At1g50730 841495 unknown protein F:unknown;P:unknown;C:unknown;MOPF O.I. C.G. H.G.
9.7 99.1 172.0 At1g62180 842514 APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis. O.I. C.G. H.G.
9.7 99.1 17.3 At5g56860 835788 GNC (GATA, nitrate-inducible, carbon metabolism-involved) F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB O.I. C.G. H.G.
9.6 99.1 58.3 At2g04795 815023 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
9.5 99.1 66.2 At3g02690 821274 integral membrane family protein F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF O.I. C.G. H.G.
9.4 99.1 26.2 At3g17650 821032 YSL5 (YELLOW STRIPE LIKE 5) Arabidopsis thaliana metal-nicotianamine transporter YSL5 O.I. C.G. H.G.
9.1 99.1 36.7 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
9.1 99.1 21.6 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 124.5 At3g16670 820919 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
8.9 99.0 85.0 At1g68440 843173 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
8.9 99.0 20.6 At2g30540 817603 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
8.6 99.0 103.0 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
8.6 99.0 31.0 At1g66130 842927 oxidoreductase N-terminal domain-containing protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
57.0	99.8	57.8	At1g49200	841343	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
39.6	99.8	158.0	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
34.8	99.7	42.0	At5g22390	832300	unknown protein	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
33.9	99.7	72.7	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.
29.5	99.7	128.2	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
24.8	99.6	23.5	At4g15430	827214	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
21.9	99.6	13.7	At3g09600	820117	myb family transcription factor	F:transcription factor activity, DNA binding;P:in 9 processes;C:chloroplast;PMOF	O.I.	C.G.	H.G.
20.0	99.6	32.4	At5g39660	833962	CDF2 (CYCLING DOF FACTOR 2)	Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.	O.I.	C.G.	H.G.
19.6	99.6	19.5	At3g15310	820762	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
19.1	99.6	51.7	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
18.6	99.5	99.4	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	O.I.	C.G.	H.G.
18.0	99.5	84.8	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
16.4	99.5	49.4	At2g33250	817887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.0	99.5	173.4	At1g01060	839341	LHY (LATE ELONGATED HYPOCOTYL)	LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1	O.I.	C.G.	H.G.
16.0	99.5	30.2	At4g18740	827608	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:unknown;MPOBVF	O.I.	C.G.	H.G.
15.7	99.5	59.6	At1g06830	837195	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
15.3	99.4	90.0	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
14.7	99.4	91.1	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
14.1	99.4	93.1	At3g17510	821016	CIPK1 (CBL-INTERACTING PROTEIN KINASE 1)	Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.	O.I.	C.G.	H.G.
13.8	99.4	29.8	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.
13.2	99.4	137.7	At5g02840	831766	LCL1 (LHY/CCA1-like 1)	CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
13.2	99.4	62.3	At5g17670	831633	hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOP	O.I.	C.G.	H.G.
12.4	99.3	88.7	At5g13770	831222	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB	O.I.	C.G.	H.G.
12.3	99.3	83.9	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
11.7	99.3	21.2	At1g29720	839850	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
11.5	99.3	46.1	At5g64280	836549	DiT2.2 (dicarboxylate transporter 2.2)	F:oxoglutarate:malate antiporter activity;P:malate transport, sodium ion transport;C:chloroplast, membrane;BOPAFMV	O.I.	C.G.	H.G.
11.5	99.3	43.9	At5g54130	835500	-	-	O.I.	C.G.	H.G.
11.5	99.3	41.3	At1g29430	839819	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
11.4	99.3	51.7	At5g59750	836096	riboflavin biosynthesis protein, putative	F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP	O.I.	C.G.	H.G.
10.8	99.2	50.1	At1g62960	842598	ACS10 (ACC SYNTHASE 10)	Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.	O.I.	C.G.	H.G.
10.8	99.2	32.5	At1g15180	838084	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
10.6	99.2	40.2	At4g27030	828811	small conjugating protein ligase	F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV	O.I.	C.G.	H.G.
9.8	99.1	59.6	At1g42550	840860	PMI1 (PLASTID MOVEMENT IMPAIRED1)	Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.	O.I.	C.G.	H.G.
9.8	99.1	42.0	At1g50730	841495	unknown protein	F:unknown;P:unknown;C:unknown;MOPF	O.I.	C.G.	H.G.
9.7	99.1	172.0	At1g62180	842514	APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)	encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.	O.I.	C.G.	H.G.
9.7	99.1	17.3	At5g56860	835788	GNC (GATA, nitrate-inducible, carbon metabolism-involved)	F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB	O.I.	C.G.	H.G.
9.6	99.1	58.3	At2g04795	815023	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
9.5	99.1	66.2	At3g02690	821274	integral membrane family protein	F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF	O.I.	C.G.	H.G.
9.4	99.1	26.2	At3g17650	821032	YSL5 (YELLOW STRIPE LIKE 5)	Arabidopsis thaliana metal-nicotianamine transporter YSL5	O.I.	C.G.	H.G.
9.1	99.1	36.7	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
9.1	99.1	21.6	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	124.5	At3g16670	820919	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
8.9	99.0	85.0	At1g68440	843173	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
8.9	99.0	20.6	At2g30540	817603	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
8.6	99.0	103.0	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
8.6	99.0	31.0	At1g66130	842927	oxidoreductase N-terminal domain-containing protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAP	O.I.	C.G.	H.G.

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GSM ID	GSM253154
Assay name	end of the night A
GSE experiment	GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

Microarray experiments to specifically-expressed genes

GSM ID GSM253154 Assay name end of the night A GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night

GSM ID GSM253154

Assay name end of the night A

GSE experiment GSE10016: Expression data of Arabidopsis thaliana rosettes in an extended night