CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM252690

Assay name Section of Root from 270 mm to 340 mm harvested immediately rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
119.2 99.9 46.0 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
93.5 99.9 106.7 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
76.7 99.9 335.0 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
75.5 99.9 30.8 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. O.I. C.G. H.G.
73.7 99.9 58.0 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
63.3 99.8 281.2 At3g54960 824661 ATPDIL1-3 (PDI-LIKE 1-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.
61.2 99.8 152.9 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
54.8 99.8 132.9 At4g03190 828045 GRH1 (GRR1-LIKE PROTEIN 1) Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. O.I. C.G. H.G.
54.6 99.8 72.5 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
54.6 99.8 67.4 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
43.4 99.8 30.7 At3g62280 825401 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
39.2 99.8 88.0 At3g52940 824460 FK (FACKEL) Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo. O.I. C.G. H.G.
37.6 99.7 40.9 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
37.0 99.7 9.9 At1g60790 842373 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
34.9 99.7 72.9 At4g17190 827430 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers. O.I. C.G. H.G.
32.5 99.7 39.8 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM O.I. C.G. H.G.
32.2 99.7 128.1 At2g48020 819414 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, chloroplast, vacuole, membrane;BMFPOAV O.I. C.G. H.G.
30.4 99.7 38.6 At5g19340 832054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV O.I. C.G. H.G.
29.8 99.7 33.0 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
29.0 99.7 88.2 At3g18000 821324 XPL1 (XIPOTL 1) Arabidopsis thaliana N-methyltransferase-like protein mRNA. O.I. C.G. H.G.
28.3 99.7 58.0 At3g01780 821081 TPLATE Encodes TPLATE, a cytokinesis protein targeted to the cell plate. Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position. O.I. C.G. H.G.
28.0 99.7 81.4 At5g56040 835702 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
27.4 99.7 150.3 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.1 99.7 263.7 At1g04430 839522 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBO O.I. C.G. H.G.
25.6 99.7 140.3 At1g35620 840461 ATPDIL5-2 (PDI-LIKE 5-2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants. O.I. C.G. H.G.
25.3 99.6 22.3 At5g10720 830938 AHK5 (ARABIDOPSIS HISTIDINE KINASE 5) member of Histidine Kinase O.I. C.G. H.G.
25.0 99.6 69.6 At1g62810 842580 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
24.2 99.6 77.7 At4g29680 829089 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV O.I. C.G. H.G.
24.1 99.6 19.3 At2g26360 817176 binding F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
23.4 99.6 16.1 At1g50580 841480 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
23.3 99.6 111.4 At3g17780 821046 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
23.0 99.6 68.7 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
23.0 99.6 16.9 At1g64920 842800 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
22.8 99.6 133.6 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
22.4 99.6 15.8 At3g24210 822007 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
21.9 99.6 116.7 At2g34560 818020 katanin, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein metabolic process;C:unknown;OBMFPAV O.I. C.G. H.G.
21.8 99.6 36.1 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO O.I. C.G. H.G.
21.3 99.6 23.5 At5g14150 831265 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBO O.I. C.G. H.G.
20.9 99.6 141.9 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
20.4 99.6 11.1 At3g59850 825155 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
19.8 99.6 131.2 At1g19360 838519 - F:unknown;P:unknown;C:endoplasmic reticulum;PO O.I. C.G. H.G.
19.8 99.6 64.9 At5g54440 835532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
19.4 99.6 60.7 At4g29520 829073 - F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA O.I. C.G. H.G.
19.3 99.6 22.4 At5g14020 831250 - F:unknown;P:N-terminal protein myristoylation;C:vacuole;P O.I. C.G. H.G.
19.2 99.6 117.7 At5g65810 836710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.8 99.5 63.8 At1g69030 843235 - F:unknown;P:biological_process unknown;C:unknown;PMOFAB O.I. C.G. H.G.
18.5 99.5 32.2 At1g05650 837072 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
18.3 99.5 22.5 At2g43880 818992 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
18.2 99.5 31.0 At5g18070 831926 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). O.I. C.G. H.G.
18.0 99.5 111.6 At1g60810 842375 ACLA-2 One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase O.I. C.G. H.G.
17.6 99.5 65.6 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
17.0 99.5 104.1 At1g45130 841080 BGAL5 (beta-galactosidase 5) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA O.I. C.G. H.G.
16.9 99.5 138.8 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
16.7 99.5 28.3 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.5 99.5 33.6 At2g02780 814807 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
16.5 99.5 33.6 At3g55005 824666 TON1B (tonneau 1b) Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1. O.I. C.G. H.G.
16.4 99.5 168.6 At5g02270 831709 ATNAP9 member of NAP subfamily O.I. C.G. H.G.
16.2 99.5 322.7 At1g66270 842944 BGLU21 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA O.I. C.G. H.G.
16.2 99.5 56.3 At5g19930 832115 integral membrane family protein F:unknown;P:unknown;C:endomembrane system;OBMAFP O.I. C.G. H.G.
15.9 99.5 61.8 At1g53290 841763 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB O.I. C.G. H.G.
15.9 99.5 17.6 At3g27950 822419 early nodule-specific protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
15.9 99.5 15.0 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
15.8 99.5 88.1 At1g10030 837538 ERG28 (Arabidopsis homolog of yeast ergosterol28) F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO O.I. C.G. H.G.
15.8 99.5 14.4 At1g73160 843647 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM O.I. C.G. H.G.
15.7 99.5 16.9 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
15.6 99.5 170.0 At1g20950 838689 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM O.I. C.G. H.G.
15.6 99.5 32.5 At4g38270 829984 GAUT3 (Galacturonosyltransferase 3) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
15.6 99.5 26.2 At1g74160 843756 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
15.4 99.5 28.9 At2g41810 818780 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
15.2 99.4 390.0 At2g22170 816751 lipid-associated family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO O.I. C.G. H.G.
15.0 99.4 15.5 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
14.8 99.4 21.5 At5g25830 832652 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
14.7 99.4 21.6 At1g68150 843143 WRKY9 member of WRKY Transcription Factor; Group II-b O.I. C.G. H.G.
14.5 99.4 35.3 At1g76260 843959 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFPOB O.I. C.G. H.G.
14.5 99.4 10.7 At5g17960 831663 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
14.4 99.4 101.9 At1g47625 3767388 - pseudogene of seven transmembrane domain protein O.I. C.G. H.G.
14.4 99.4 81.3 At3g15610 820803 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
14.2 99.4 84.1 At5g56360 835736 calmodulin-binding protein F:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
14.1 99.4 86.4 At2g34300 817991 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA O.I. C.G. H.G.
14.0 99.4 143.1 At1g76140 843946 serine-type endopeptidase/ serine-type peptidase F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast;OBMPAF O.I. C.G. H.G.
13.9 99.4 133.9 At2g17720 816281 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV O.I. C.G. H.G.
13.9 99.4 69.4 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
13.9 99.4 45.5 At5g27450 832804 MK (MEVALONATE KINASE) Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway. O.I. C.G. H.G.
13.9 99.4 30.1 At5g57700 835877 BNR/Asp-box repeat family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
13.9 99.4 10.7 At2g24400 816976 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
13.8 99.4 112.2 At1g76090 843941 SMT3 (STEROL METHYLTRANSFERASE 3) Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway. O.I. C.G. H.G.
13.8 99.4 43.5 At5g53340 835415 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;PMO O.I. C.G. H.G.
13.8 99.4 24.8 At1g10120 837549 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
13.6 99.4 23.7 At1g02430 839242 ATARFD1B (ADP-ribosylation factor D1B) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. O.I. C.G. H.G.
13.5 99.4 25.1 At5g01620 831716 unknown protein F:unknown;P:unknown;C:endomembrane system;PM O.I. C.G. H.G.
13.4 99.4 91.0 At1g76550 843988 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAMF O.I. C.G. H.G.
13.4 99.4 39.0 At1g17430 838315 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOPMAF O.I. C.G. H.G.
13.3 99.4 108.8 At5g47770 834828 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) Encodes a protein with farnesyl diphosphate synthase activity. O.I. C.G. H.G.
13.2 99.4 214.1 At1g58270 842196 ZW9 ZW9 mRNA, complete cds O.I. C.G. H.G.
13.1 99.4 182.4 At5g60640 836185 ATPDIL1-4 (PDI-LIKE 1-4) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants. O.I. C.G. H.G.
13.1 99.4 40.0 At1g18640 838445 - - O.I. C.G. H.G.
13.0 99.4 27.3 At4g26470 828753 calcium ion binding F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
13.0 99.4 10.9 At3g46720 823825 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
12.9 99.3 61.8 At5g66410 836773 PLP3b (Phosducin-like protein 3 homolog) Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy. O.I. C.G. H.G.
12.8 99.3 29.6 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
119.2	99.9	46.0	At5g62330	836354	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
93.5	99.9	106.7	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
76.7	99.9	335.0	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
75.5	99.9	30.8	At5g15150	831367	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.	O.I.	C.G.	H.G.
73.7	99.9	58.0	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
63.3	99.8	281.2	At3g54960	824661	ATPDIL1-3 (PDI-LIKE 1-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.
61.2	99.8	152.9	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
54.8	99.8	132.9	At4g03190	828045	GRH1 (GRR1-LIKE PROTEIN 1)	Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.	O.I.	C.G.	H.G.
54.6	99.8	72.5	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
54.6	99.8	67.4	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
43.4	99.8	30.7	At3g62280	825401	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
39.2	99.8	88.0	At3g52940	824460	FK (FACKEL)	Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.	O.I.	C.G.	H.G.
37.6	99.7	40.9	At5g51500	835224	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
37.0	99.7	9.9	At1g60790	842373	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
34.9	99.7	72.9	At4g17190	827430	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.	O.I.	C.G.	H.G.
32.5	99.7	39.8	At3g23470	821928	cyclopropane-fatty-acyl-phospholipid synthase	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM	O.I.	C.G.	H.G.
32.2	99.7	128.1	At2g48020	819414	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, chloroplast, vacuole, membrane;BMFPOAV	O.I.	C.G.	H.G.
30.4	99.7	38.6	At5g19340	832054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV	O.I.	C.G.	H.G.
29.8	99.7	33.0	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
29.0	99.7	88.2	At3g18000	821324	XPL1 (XIPOTL 1)	Arabidopsis thaliana N-methyltransferase-like protein mRNA.	O.I.	C.G.	H.G.
28.3	99.7	58.0	At3g01780	821081	TPLATE	Encodes TPLATE, a cytokinesis protein targeted to the cell plate. Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position.	O.I.	C.G.	H.G.
28.0	99.7	81.4	At5g56040	835702	leucine-rich repeat protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
27.4	99.7	150.3	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.1	99.7	263.7	At1g04430	839522	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBO	O.I.	C.G.	H.G.
25.6	99.7	140.3	At1g35620	840461	ATPDIL5-2 (PDI-LIKE 5-2)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.	O.I.	C.G.	H.G.
25.3	99.6	22.3	At5g10720	830938	AHK5 (ARABIDOPSIS HISTIDINE KINASE 5)	member of Histidine Kinase	O.I.	C.G.	H.G.
25.0	99.6	69.6	At1g62810	842580	copper amine oxidase, putative	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
24.2	99.6	77.7	At4g29680	829089	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV	O.I.	C.G.	H.G.
24.1	99.6	19.3	At2g26360	817176	binding	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
23.4	99.6	16.1	At1g50580	841480	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
23.3	99.6	111.4	At3g17780	821046	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
23.0	99.6	68.7	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
23.0	99.6	16.9	At1g64920	842800	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
22.8	99.6	133.6	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
22.4	99.6	15.8	At3g24210	822007	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
21.9	99.6	116.7	At2g34560	818020	katanin, putative	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein metabolic process;C:unknown;OBMFPAV	O.I.	C.G.	H.G.
21.8	99.6	36.1	At1g31950	840085	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO	O.I.	C.G.	H.G.
21.3	99.6	23.5	At5g14150	831265	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBO	O.I.	C.G.	H.G.
20.9	99.6	141.9	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
20.4	99.6	11.1	At3g59850	825155	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
19.8	99.6	131.2	At1g19360	838519	-	F:unknown;P:unknown;C:endoplasmic reticulum;PO	O.I.	C.G.	H.G.
19.8	99.6	64.9	At5g54440	835532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
19.4	99.6	60.7	At4g29520	829073	-	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA	O.I.	C.G.	H.G.
19.3	99.6	22.4	At5g14020	831250	-	F:unknown;P:N-terminal protein myristoylation;C:vacuole;P	O.I.	C.G.	H.G.
19.2	99.6	117.7	At5g65810	836710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.8	99.5	63.8	At1g69030	843235	-	F:unknown;P:biological_process unknown;C:unknown;PMOFAB	O.I.	C.G.	H.G.
18.5	99.5	32.2	At1g05650	837072	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
18.3	99.5	22.5	At2g43880	818992	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
18.2	99.5	31.0	At5g18070	831926	DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)	encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).	O.I.	C.G.	H.G.
18.0	99.5	111.6	At1g60810	842375	ACLA-2	One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase	O.I.	C.G.	H.G.
17.6	99.5	65.6	At1g57590	842135	carboxylesterase	F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
17.0	99.5	104.1	At1g45130	841080	BGAL5 (beta-galactosidase 5)	F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA	O.I.	C.G.	H.G.
16.9	99.5	138.8	At2g42570	818857	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
16.7	99.5	28.3	At3g50640	824227	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.5	99.5	33.6	At2g02780	814807	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
16.5	99.5	33.6	At3g55005	824666	TON1B (tonneau 1b)	Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1.	O.I.	C.G.	H.G.
16.4	99.5	168.6	At5g02270	831709	ATNAP9	member of NAP subfamily	O.I.	C.G.	H.G.
16.2	99.5	322.7	At1g66270	842944	BGLU21	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA	O.I.	C.G.	H.G.
16.2	99.5	56.3	At5g19930	832115	integral membrane family protein	F:unknown;P:unknown;C:endomembrane system;OBMAFP	O.I.	C.G.	H.G.
15.9	99.5	61.8	At1g53290	841763	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB	O.I.	C.G.	H.G.
15.9	99.5	17.6	At3g27950	822419	early nodule-specific protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
15.9	99.5	15.0	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
15.8	99.5	88.1	At1g10030	837538	ERG28 (Arabidopsis homolog of yeast ergosterol28)	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO	O.I.	C.G.	H.G.
15.8	99.5	14.4	At1g73160	843647	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM	O.I.	C.G.	H.G.
15.7	99.5	16.9	At1g27140	839603	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
15.6	99.5	170.0	At1g20950	838689	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM	O.I.	C.G.	H.G.
15.6	99.5	32.5	At4g38270	829984	GAUT3 (Galacturonosyltransferase 3)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
15.6	99.5	26.2	At1g74160	843756	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
15.4	99.5	28.9	At2g41810	818780	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
15.2	99.4	390.0	At2g22170	816751	lipid-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO	O.I.	C.G.	H.G.
15.0	99.4	15.5	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
14.8	99.4	21.5	At5g25830	832652	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
14.7	99.4	21.6	At1g68150	843143	WRKY9	member of WRKY Transcription Factor; Group II-b	O.I.	C.G.	H.G.
14.5	99.4	35.3	At1g76260	843959	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFPOB	O.I.	C.G.	H.G.
14.5	99.4	10.7	At5g17960	831663	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
14.4	99.4	101.9	At1g47625	3767388	-	pseudogene of seven transmembrane domain protein	O.I.	C.G.	H.G.
14.4	99.4	81.3	At3g15610	820803	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
14.2	99.4	84.1	At5g56360	835736	calmodulin-binding protein	F:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
14.1	99.4	86.4	At2g34300	817991	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA	O.I.	C.G.	H.G.
14.0	99.4	143.1	At1g76140	843946	serine-type endopeptidase/ serine-type peptidase	F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast;OBMPAF	O.I.	C.G.	H.G.
13.9	99.4	133.9	At2g17720	816281	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV	O.I.	C.G.	H.G.
13.9	99.4	69.4	At4g19030	827641	NLM1	an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
13.9	99.4	45.5	At5g27450	832804	MK (MEVALONATE KINASE)	Encodes a protein with mevalonate kinase activity involved in the mevalonate pathway.	O.I.	C.G.	H.G.
13.9	99.4	30.1	At5g57700	835877	BNR/Asp-box repeat family protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
13.9	99.4	10.7	At2g24400	816976	auxin-responsive protein, putative / small auxin up RNA (SAUR_D)	F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
13.8	99.4	112.2	At1g76090	843941	SMT3 (STEROL METHYLTRANSFERASE 3)	Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.	O.I.	C.G.	H.G.
13.8	99.4	43.5	At5g53340	835415	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;PMO	O.I.	C.G.	H.G.
13.8	99.4	24.8	At1g10120	837549	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
13.6	99.4	23.7	At1g02430	839242	ATARFD1B (ADP-ribosylation factor D1B)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
13.5	99.4	25.1	At5g01620	831716	unknown protein	F:unknown;P:unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
13.4	99.4	91.0	At1g76550	843988	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAMF	O.I.	C.G.	H.G.
13.4	99.4	39.0	At1g17430	838315	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOPMAF	O.I.	C.G.	H.G.
13.3	99.4	108.8	At5g47770	834828	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	Encodes a protein with farnesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
13.2	99.4	214.1	At1g58270	842196	ZW9	ZW9 mRNA, complete cds	O.I.	C.G.	H.G.
13.1	99.4	182.4	At5g60640	836185	ATPDIL1-4 (PDI-LIKE 1-4)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.	O.I.	C.G.	H.G.
13.1	99.4	40.0	At1g18640	838445	-	-	O.I.	C.G.	H.G.
13.0	99.4	27.3	At4g26470	828753	calcium ion binding	F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
13.0	99.4	10.9	At3g46720	823825	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
12.9	99.3	61.8	At5g66410	836773	PLP3b (Phosducin-like protein 3 homolog)	Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.	O.I.	C.G.	H.G.
12.8	99.3	29.6	At5g52280	835304	protein transport protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.

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GSM ID	GSM252690
Assay name	Section of Root from 270 mm to 340 mm harvested immediately rep1
GSE experiment	GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Microarray experiments to specifically-expressed genes

GSM ID GSM252690 Assay name Section of Root from 270 mm to 340 mm harvested immediately rep1 GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

GSM ID GSM252690

Assay name Section of Root from 270 mm to 340 mm harvested immediately rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity