Microarray experiments to specifically-expressed genes

GSM ID GSM252685
Assay name Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep2
GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
163.799.9321.7At1g22880838893CEL5 (CELLULASE 5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOFO.I.C.G.H.G.
158.099.950.9At3g62760825451ATGSTF13Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
149.699.952.9At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
148.499.944.8At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
109.199.941.9At2g43480818949peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
94.599.9279.1At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
87.799.9129.0At4g37160829870sks15 (SKU5 Similar 15)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
86.899.9146.9At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
83.699.949.6At1g56680842124glycoside hydrolase family 19 proteinF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
81.999.982.5At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
73.799.957.1At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
72.399.9195.6At5g10130830877pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.C.G.H.G.
65.799.8124.4At5g60520836173late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
65.799.853.5At1g33750840266terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
65.699.8226.1At3g19430821477late embryogenesis abundant protein-related / LEA protein-relatedF:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVAO.I.C.G.H.G.
59.999.8209.6At1g50060841430pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
58.399.818.3At5g15725831428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
56.899.8147.4At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
56.299.891.7At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
54.199.847.3At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.C.G.H.G.
52.299.839.0At5g57980835909RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)NRPB5-like protein of unknown function; homologous to budding yeast RPB5O.I.C.G.H.G.
48.099.835.4At1g33280840223ANAC015 (Arabidopsis NAC domain containing protein 15)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
47.199.895.1At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
46.899.8376.9At5g54370835525late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
45.499.8246.8At1g52050841634jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
45.399.887.0At2g04025814929unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
42.499.850.4At5g093008307892-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putativeF:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:mitochondrion;BOMFPAO.I.C.G.H.G.
42.399.840.9At1g11000837643MLO4 (MILDEW RESISTANCE LOCUS O 4)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
41.799.8270.2At1g52070841636jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
40.799.834.3At1g23160838924auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:unknown;OPBMFO.I.C.G.H.G.
40.399.8138.5At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
40.399.821.3At5g57420835848IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33)Belongs to auxin inducible gene family.O.I.C.G.H.G.
39.399.832.0At5g14020831250-F:unknown;P:N-terminal protein myristoylation;C:vacuole;PO.I.C.G.H.G.
38.299.884.7At1g65570842868polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
37.599.739.7At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
36.999.7160.8At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
35.499.767.9At2g43600818962glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
35.199.749.7At5g57500835854transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOFO.I.C.G.H.G.
34.199.710.8At5g40320834030DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.C.G.H.G.
33.899.713.6At1g50720841494stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFMO.I.C.G.H.G.
33.799.713.2At3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
33.199.740.9At5g14690831321unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVMO.I.C.G.H.G.
32.999.783.4At2g45730819181eukaryotic initiation factor 3 gamma subunit family proteinF:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
32.999.743.3At5g04970830379pectinesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVAO.I.C.G.H.G.
32.699.728.6At5g51470835221auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMFO.I.C.G.H.G.
32.199.780.8At1g79150844256bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
31.999.785.8At5g20400832162oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.O.I.C.G.H.G.
31.799.718.4At3g30350822736unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.599.7249.2At2g40360818629transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVAO.I.C.G.H.G.
31.399.724.4At4g40000830161NOL1/NOP2/sun family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
31.099.768.0At5g57120835816-F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVAO.I.C.G.H.G.
30.999.7321.0At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
30.799.713.3At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
30.499.779.8At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVO.I.C.G.H.G.
30.199.717.7At5g39820833978anac094 (Arabidopsis NAC domain containing protein 94)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POMO.I.C.G.H.G.
30.199.715.7At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.O.I.C.G.H.G.
29.999.724.0At4g37940829950AGL21encodes a MADS box protein, highly expressed in the root.O.I.C.G.H.G.
29.799.7141.2At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
29.699.7124.4At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
29.499.765.8At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
29.299.7332.3At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
28.899.791.3At5g66280836760GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)GDP-D-mannose 4,6-dehydrataseO.I.C.G.H.G.
28.699.724.6At1g79580844296SMB (SOMBRERO)NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.O.I.C.G.H.G.
28.299.719.3At3g55550824720lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
28.199.7165.0At1g52930841726brix domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
27.999.723.3At4g01240827909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.799.773.9At4g27400828848late embryogenesis abundant protein-related / LEA protein-relatedF:unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
27.799.728.0At3g15240820755--O.I.C.G.H.G.
26.799.758.7At1g69526843287UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;PBOO.I.C.G.H.G.
26.799.742.0At3g12860820468nucleolar protein Nop56, putativeF:unknown;P:biological_process unknown;C:unknown;MOFPBAVO.I.C.G.H.G.
26.599.737.1At1g14080837968FUT6 (FUCOSYLTRANSFERASE 6)member of Xyloglucan fucosyltransferase familyO.I.C.G.H.G.
26.099.758.6At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
25.999.727.8At1g07290837240nucleotide-sugar transmembrane transporterF:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
25.799.736.7At2g18220816337-F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
25.499.6121.7At3g05060819668SAR DNA-binding protein, putativeSAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like proteinO.I.C.G.H.G.
25.099.644.6At5g38720833863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
24.599.659.0At2g23630816895sks16 (SKU5 Similar 16)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
24.499.646.8At1g17560838332HLL (HUELLENLOS)Mutant shows abnormal ovule developmentO.I.C.G.H.G.
24.399.649.2At2g19385816457zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBO.I.C.G.H.G.
23.699.676.9At5g27120832770SAR DNA-binding protein, putativeSAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 proteinO.I.C.G.H.G.
23.699.622.6At1g73340843669electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAVO.I.C.G.H.G.
23.699.618.1At3g06840819868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.199.694.2At1g14620838024DECOY (DECOY)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBO.I.C.G.H.G.
23.199.692.8At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
23.199.674.2At1g31860840076AT-IEencodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.O.I.C.G.H.G.
22.899.6129.5At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
22.399.691.1At2g25670817108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
21.599.624.4At3g05390819703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABOO.I.C.G.H.G.
21.199.6178.6At1g52060841635-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
21.199.6163.4At1g16740838245ribosomal protein L20 family proteinF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.C.G.H.G.
20.899.6103.6At1g04870839393PRMT10Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.C.G.H.G.
20.599.625.6At1g44318841025hemb2F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAPO.I.C.G.H.G.
20.499.654.1At1g02330839367-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
20.299.615.8At5g02070831776protein kinase-relatedF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
20.199.621.7At1g63250842631DEAD box RNA helicase, putativeF:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
20.099.687.3At4g38890830044dihydrouridine synthase family proteinF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPAO.I.C.G.H.G.
19.799.683.6At5g25900832659GA3 (GA REQUIRING 3)Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.O.I.C.G.H.G.
19.799.662.5At1g72090843540radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, membrane;OBAMPO.I.C.G.H.G.
19.399.643.3At5g16750831538TOZ (TORMOZEMBRYO DEFECTIVE)Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.O.I.C.G.H.G.
19.399.634.2At1g06720837182-F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVAO.I.C.G.H.G.



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