Microarray experiments to specifically-expressed genes

GSM ID GSM252681
Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep3
GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
66.599.84.4At4g076203770532transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
40.399.870.1At1g54890841928late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
35.799.756.6At1g17560838332HLL (HUELLENLOS)Mutant shows abnormal ovule developmentO.I.C.G.H.G.
35.699.7115.3At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
32.599.7306.9At5g44110834434POP1Encodes a member of the NAP subfamily of ABC transporters.O.I.C.G.H.G.
30.399.766.7At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
28.599.7124.3At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.399.780.8At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
25.999.760.4At1g13590837920ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.O.I.C.G.H.G.
25.099.618.8At5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
25.099.62.8At2g108403768125transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
22.899.6293.7At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
22.599.665.7At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
21.499.623.1At3g57360824903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
21.299.6735.2At4g3920083007540S ribosomal protein S25 (RPS25E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOAO.I.C.G.H.G.
21.299.642.5At2g04090814945MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
20.699.688.6At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
20.299.6199.5At2g40360818629transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVAO.I.C.G.H.G.
19.899.6245.4At3g1009082017040S ribosomal protein S28 (RPS28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFO.I.C.G.H.G.
19.799.6444.1At2g22170816751lipid-associated family proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMOO.I.C.G.H.G.
19.199.692.2At5g16060831463-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
19.099.585.6At1g16000838170unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.099.510.7At3g59850825155polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
18.799.51.9At1g56530842106hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
18.399.5247.1At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
17.899.5149.1At5g48570834913peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPAO.I.C.G.H.G.
17.399.5146.9At3g54960824661ATPDIL1-3 (PDI-LIKE 1-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.O.I.C.G.H.G.
17.299.560.0At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.O.I.C.G.H.G.
17.099.5146.7At1g16740838245ribosomal protein L20 family proteinF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.C.G.H.G.
16.899.579.9At5g60950836216COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.699.556.7At1g62810842580copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
16.699.57.4At2g18970816414unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.599.530.5At1g05650837072polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
16.399.5109.4At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
16.199.5135.3At2g42570818857unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
16.199.537.4At2g14460815934unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.099.536.5At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
15.999.5133.8At4g00585828026unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMOO.I.C.G.H.G.
15.799.5124.4At5g09590830818MTHSC70-2 (MITOCHONDRIAL HSP70 2)heat shock protein 70 (Hsc70-5); nuclearO.I.C.G.H.G.
15.599.512.2At2g31725817729unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
14.999.4152.1At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.H.G.
14.999.424.8At1g02430839242ATARFD1B (ADP-ribosylation factor D1B)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.O.I.C.G.H.G.
14.899.429.7At3g52740824440unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.899.416.6At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
14.799.454.7At1g79150844256bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
14.799.413.3At3g53650824533histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFBO.I.C.G.H.G.
14.599.4345.3At3g0670081985560S ribosomal protein L29 (RPL29A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPFO.I.C.G.H.G.
14.499.410.9At1g11120837653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
14.099.417.7At5g42060834211unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.999.4170.1At2g3939081852460S ribosomal protein L35 (RPL35B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
13.199.493.4At5g43580834378serine-type endopeptidase inhibitorPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
13.199.464.0At5g16450831506dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
13.099.469.7At2g25670817108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
12.999.354.6At5g20400832162oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.O.I.C.G.H.G.
12.999.326.4At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
12.899.3211.1At1g58270842196ZW9ZW9 mRNA, complete cdsO.I.C.G.H.G.
12.699.3127.2At2g03870814913small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOPO.I.C.G.H.G.
12.599.39.5At3g496308241252-oxoacid-dependent oxidase, putativeF:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFMO.I.C.G.H.G.
12.499.358.5At4g22930828392PYR4 (PYRIMIDIN 4)Encodes dihydroorotase (PYR4).O.I.C.G.H.G.
12.299.323.7At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.199.379.4At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
12.199.342.6At5g57120835816-F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVAO.I.C.G.H.G.
12.199.325.6At3g19200821454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.099.3280.6At2g2521081705960S ribosomal protein L39 (RPL39A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
12.099.3253.1At1g5766084214260S ribosomal protein L21 (RPL21E)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOAFPO.I.C.G.H.G.
12.099.3175.0At3g12050820379Aha1 domain-containing proteinF:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPBO.I.C.G.H.G.
12.099.316.9At5g60730836194anion-transporting ATPase family proteinF:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFPO.I.C.G.H.G.
11.899.346.8At3g62810825456complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
11.799.340.2At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
11.699.3320.5At5g0245083190760S ribosomal protein L36 (RPL36C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFPO.I.C.G.H.G.
11.499.323.6At3g23470821928cyclopropane-fatty-acyl-phospholipid synthaseF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAMO.I.C.G.H.G.
11.399.323.6At4g31930829323mitochondrial glycoprotein family protein / MAM33 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOO.I.C.G.H.G.
11.099.2290.9At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
11.099.251.3At1g61580842454RPL3B (R-PROTEIN L3 B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFVO.I.C.G.H.G.
10.999.2456.1At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
10.999.293.3At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
10.899.288.0At1g476253767388-pseudogene of seven transmembrane domain proteinO.I.C.G.H.G.
10.799.254.6At3g26690822281ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.O.I.C.G.H.G.
10.799.227.2At2g47460819359MYB12 (MYB DOMAIN PROTEIN 12)"MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. " The redundant factors are MYB11 and MYB111 although MYB12 is primarily required for flavonol biosynthesis in roots.O.I.C.G.H.G.
10.699.2165.3At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
10.699.2147.1At1g61570842453TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.O.I.C.G.H.G.
10.699.2129.0At2g17420816248NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)NADPH-dependent thioredoxin reductase, major cytosolic isoformO.I.C.G.H.G.
10.699.271.1At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
10.699.262.1At2g18400816355ribosomal protein L6 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMAO.I.C.G.H.G.
10.699.220.2At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
10.699.22.0At1g79100844251arginine/serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.599.240.1At3g13845820597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.599.221.9At2g14100815896CYP705A13a member of the cytochrome P450 familyO.I.C.G.H.G.
10.499.2109.9At3g25230822117ROF1 (ROTAMASE FKBP 1)Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs.O.I.C.G.H.G.
10.499.24.4At4g13190826933ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
10.299.2459.8At4g2939082906040S ribosomal protein S30 (RPS30B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAVO.I.C.G.H.G.
10.299.247.5At5g55200835613co-chaperone grpE protein, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMFPAO.I.C.G.H.G.
10.299.226.8At1g60850842377ATRPAC42F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAPO.I.C.G.H.G.
10.199.298.8At5g41010834103NRPB12Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.O.I.C.G.H.G.
10.199.223.6At3g15300820761VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
10.199.218.0At4g33100829447-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
10.199.211.7At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
10.099.298.1At3g17940820642aldose 1-epimerase family proteinF:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
10.099.26.7At4g35660829718unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMBOO.I.C.G.H.G.
9.899.1206.7At5g66680836801DGL1Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage