CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM252680

Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep2

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
61.9 99.8 93.8 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
40.5 99.8 148.1 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.9 99.7 64.2 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
32.8 99.7 150.9 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.9 99.7 31.7 At3g02240 820386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.5 99.7 103.8 At5g15910 831448 dehydrogenase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:mitochondrion, plastid;BOPFMAV O.I. C.G. H.G.
28.1 99.7 228.1 At5g18800 831998 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:unknown;MFPO O.I. C.G. H.G.
26.7 99.7 71.5 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.8 99.7 203.5 At1g78340 844169 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
24.8 99.6 252.8 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM O.I. C.G. H.G.
24.8 99.6 60.4 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
24.2 99.6 327.2 At4g19880 827734 - F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA O.I. C.G. H.G.
24.1 99.6 31.5 At1g02430 839242 ATARFD1B (ADP-ribosylation factor D1B) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. O.I. C.G. H.G.
23.3 99.6 66.6 At4g29520 829073 - F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA O.I. C.G. H.G.
22.8 99.6 93.1 At5g60950 836216 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.3 99.6 83.3 At5g16450 831506 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
21.8 99.6 77.9 At3g26690 822281 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates. O.I. C.G. H.G.
21.3 99.6 34.1 At3g19200 821454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.7 99.6 87.9 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
18.2 99.5 23.4 At3g21400 821694 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PM O.I. C.G. H.G.
17.8 99.5 140.7 At1g17180 838289 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
17.6 99.5 38.2 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
17.2 99.5 81.6 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.0 99.5 75.0 At5g39340 833930 AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
16.9 99.5 68.3 At4g22930 828392 PYR4 (PYRIMIDIN 4) Encodes dihydroorotase (PYR4). O.I. C.G. H.G.
16.6 99.5 250.9 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
16.1 99.5 12.0 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
16.0 99.5 252.9 At3g06680 819853 60S ribosomal protein L29 (RPL29B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPF O.I. C.G. H.G.
16.0 99.5 42.5 At1g23750 838985 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PAO O.I. C.G. H.G.
15.7 99.5 230.9 At5g05370 830419 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P O.I. C.G. H.G.
15.6 99.5 91.0 At3g17780 821046 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
15.6 99.5 46.9 At1g13590 837920 ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR) Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. O.I. C.G. H.G.
15.5 99.5 115.4 At5g57785 835887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
15.5 99.5 24.4 At1g69600 843296 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid. O.I. C.G. H.G.
15.3 99.4 31.5 At3g22540 821825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.1 99.4 205.9 At2g31490 817707 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P O.I. C.G. H.G.
14.9 99.4 9.5 At3g59850 825155 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
14.8 99.4 87.6 At2g47640 819377 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPA O.I. C.G. H.G.
14.5 99.4 51.9 At2g07340 815304 prefoldin-related KE2 family protein F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFAPO O.I. C.G. H.G.
14.3 99.4 26.5 At5g19340 832054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV O.I. C.G. H.G.
14.1 99.4 59.2 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM O.I. C.G. H.G.
14.0 99.4 103.1 At1g72170 843548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPO O.I. C.G. H.G.
14.0 99.4 20.0 At2g46410 819249 CPC (CAPRICE) Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. O.I. C.G. H.G.
13.9 99.4 55.3 At1g08780 837400 AIP3 (ABI3-INTERACTING PROTEIN 3) F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA O.I. C.G. H.G.
13.9 99.4 15.2 At3g29780 822684 RALFL27 (ralf-like 27) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
13.9 99.4 11.3 At3g46720 823825 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
13.3 99.4 160.0 At3g62400 825413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.3 99.4 100.2 At5g40650 834065 SDH2-2 One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth. O.I. C.G. H.G.
13.0 99.4 43.5 At5g44710 834500 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO O.I. C.G. H.G.
12.8 99.3 13.9 At5g28650 832971 WRKY74 member of WRKY Transcription Factor; Group II-d O.I. C.G. H.G.
12.7 99.3 514.7 At4g29390 829060 40S ribosomal protein S30 (RPS30B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV O.I. C.G. H.G.
12.6 99.3 127.4 At2g03870 814913 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOP O.I. C.G. H.G.
12.5 99.3 190.6 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
12.3 99.3 350.2 At2g22170 816751 lipid-associated family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO O.I. C.G. H.G.
12.3 99.3 68.5 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
12.3 99.3 29.5 At3g15720 820815 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV O.I. C.G. H.G.
12.3 99.3 23.4 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
12.2 99.3 59.7 At5g61220 836243 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
12.1 99.3 91.4 At1g60810 842375 ACLA-2 One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase O.I. C.G. H.G.
12.1 99.3 80.9 At2g43640 818966 signal recognition particle 14 kDa family protein / SRP14 family protein F:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPO O.I. C.G. H.G.
12.1 99.3 75.3 At1g74210 843761 glycerophosphoryl diester phosphodiesterase family protein F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:vacuole;BOMPFAV O.I. C.G. H.G.
12.0 99.3 107.8 At5g41010 834103 NRPB12 Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. O.I. C.G. H.G.
12.0 99.3 60.3 At1g64750 842783 ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
11.9 99.3 302.9 At2g38870 818471 protease inhibitor, putative Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
11.9 99.3 294.9 At1g67350 843056 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;P O.I. C.G. H.G.
11.9 99.3 72.8 At5g16060 831463 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
11.6 99.3 78.0 At1g07070 837218 60S ribosomal protein L35a (RPL35aA) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
11.6 99.3 16.1 At5g42060 834211 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.5 99.3 2.7 At4g07840 3770284 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.4 99.3 121.1 At2g37120 818288 DNA-binding S1FA family protein F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P O.I. C.G. H.G.
11.1 99.2 531.1 At4g39200 830075 40S ribosomal protein S25 (RPS25E) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA O.I. C.G. H.G.
11.1 99.2 119.2 At1g61780 842475 postsynaptic protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
11.1 99.2 84.7 At2g30000 817551 - F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
11.1 99.2 37.6 At1g05210 839261 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
10.9 99.2 79.2 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
10.9 99.2 10.8 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO O.I. C.G. H.G.
10.8 99.2 57.6 At1g73940 843731 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.8 99.2 17.4 At2g28250 817371 NCRK F:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVA O.I. C.G. H.G.
10.6 99.2 294.9 At3g06700 819855 60S ribosomal protein L29 (RPL29A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF O.I. C.G. H.G.
10.6 99.2 264.0 At2g25210 817059 60S ribosomal protein L39 (RPL39A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP O.I. C.G. H.G.
10.6 99.2 179.5 At3g10090 820170 40S ribosomal protein S28 (RPS28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF O.I. C.G. H.G.
10.6 99.2 168.9 At2g35120 818078 glycine cleavage system H protein, mitochondrial, putative F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex;BOPMFA O.I. C.G. H.G.
10.4 99.2 61.2 At2g18400 816355 ribosomal protein L6 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA O.I. C.G. H.G.
10.3 99.2 112.8 At1g09330 837454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOP O.I. C.G. H.G.
10.2 99.2 82.9 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
10.0 99.2 333.5 At3g10860 820256 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;P O.I. C.G. H.G.
10.0 99.2 144.1 At2g39390 818524 60S ribosomal protein L35 (RPL35B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
10.0 99.2 106.1 At4g00585 828026 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMO O.I. C.G. H.G.
9.9 99.1 112.3 At1g16740 838245 ribosomal protein L20 family protein F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM O.I. C.G. H.G.
9.9 99.1 59.5 At1g79390 844277 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.8 99.1 229.7 At2g46540 819266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P O.I. C.G. H.G.
9.8 99.1 26.1 At3g03420 821258 Ku70-binding family protein F:binding;P:unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
9.7 99.1 196.1 At4g29480 829069 mitochondrial ATP synthase g subunit family protein F:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrion;PO O.I. C.G. H.G.
9.7 99.1 24.0 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.6 99.1 123.3 At3g14290 820649 PAE2 Encodes 20S proteasome subunit PAE2 (PAE2). O.I. C.G. H.G.
9.6 99.1 101.4 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
9.5 99.1 125.3 At1g77330 844069 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) O.I. C.G. H.G.
9.5 99.1 90.8 At3g59930 825163 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
9.5 99.1 18.3 At3g25400 822124 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
9.4 99.1 595.5 At2g19730 816492 60S ribosomal protein L28 (RPL28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
61.9	99.8	93.8	At4g01630	827983	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
40.5	99.8	148.1	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.9	99.7	64.2	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
32.8	99.7	150.9	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.9	99.7	31.7	At3g02240	820386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.5	99.7	103.8	At5g15910	831448	dehydrogenase-related	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:mitochondrion, plastid;BOPFMAV	O.I.	C.G.	H.G.
28.1	99.7	228.1	At5g18800	831998	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:unknown;MFPO	O.I.	C.G.	H.G.
26.7	99.7	71.5	At3g04320	819587	endopeptidase inhibitor	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.8	99.7	203.5	At1g78340	844169	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
24.8	99.6	252.8	At2g43610	818963	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM	O.I.	C.G.	H.G.
24.8	99.6	60.4	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
24.2	99.6	327.2	At4g19880	827734	-	F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA	O.I.	C.G.	H.G.
24.1	99.6	31.5	At1g02430	839242	ATARFD1B (ADP-ribosylation factor D1B)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
23.3	99.6	66.6	At4g29520	829073	-	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFA	O.I.	C.G.	H.G.
22.8	99.6	93.1	At5g60950	836216	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.3	99.6	83.3	At5g16450	831506	dimethylmenaquinone methyltransferase family protein	F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
21.8	99.6	77.9	At3g26690	822281	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	O.I.	C.G.	H.G.
21.3	99.6	34.1	At3g19200	821454	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.7	99.6	87.9	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
18.2	99.5	23.4	At3g21400	821694	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PM	O.I.	C.G.	H.G.
17.8	99.5	140.7	At1g17180	838289	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
17.6	99.5	38.2	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
17.2	99.5	81.6	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.0	99.5	75.0	At5g39340	833930	AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)	Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
16.9	99.5	68.3	At4g22930	828392	PYR4 (PYRIMIDIN 4)	Encodes dihydroorotase (PYR4).	O.I.	C.G.	H.G.
16.6	99.5	250.9	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
16.1	99.5	12.0	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
16.0	99.5	252.9	At3g06680	819853	60S ribosomal protein L29 (RPL29B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPF	O.I.	C.G.	H.G.
16.0	99.5	42.5	At1g23750	838985	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PAO	O.I.	C.G.	H.G.
15.7	99.5	230.9	At5g05370	830419	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P	O.I.	C.G.	H.G.
15.6	99.5	91.0	At3g17780	821046	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.6	99.5	46.9	At1g13590	837920	ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)	Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.	O.I.	C.G.	H.G.
15.5	99.5	115.4	At5g57785	835887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
15.5	99.5	24.4	At1g69600	843296	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.	O.I.	C.G.	H.G.
15.3	99.4	31.5	At3g22540	821825	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.1	99.4	205.9	At2g31490	817707	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P	O.I.	C.G.	H.G.
14.9	99.4	9.5	At3g59850	825155	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
14.8	99.4	87.6	At2g47640	819377	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPA	O.I.	C.G.	H.G.
14.5	99.4	51.9	At2g07340	815304	prefoldin-related KE2 family protein	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFAPO	O.I.	C.G.	H.G.
14.3	99.4	26.5	At5g19340	832054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV	O.I.	C.G.	H.G.
14.1	99.4	59.2	At5g35940	833584	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
14.0	99.4	103.1	At1g72170	843548	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPO	O.I.	C.G.	H.G.
14.0	99.4	20.0	At2g46410	819249	CPC (CAPRICE)	Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.	O.I.	C.G.	H.G.
13.9	99.4	55.3	At1g08780	837400	AIP3 (ABI3-INTERACTING PROTEIN 3)	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA	O.I.	C.G.	H.G.
13.9	99.4	15.2	At3g29780	822684	RALFL27 (ralf-like 27)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
13.9	99.4	11.3	At3g46720	823825	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
13.3	99.4	160.0	At3g62400	825413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.3	99.4	100.2	At5g40650	834065	SDH2-2	One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.	O.I.	C.G.	H.G.
13.0	99.4	43.5	At5g44710	834500	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO	O.I.	C.G.	H.G.
12.8	99.3	13.9	At5g28650	832971	WRKY74	member of WRKY Transcription Factor; Group II-d	O.I.	C.G.	H.G.
12.7	99.3	514.7	At4g29390	829060	40S ribosomal protein S30 (RPS30B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV	O.I.	C.G.	H.G.
12.6	99.3	127.4	At2g03870	814913	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOP	O.I.	C.G.	H.G.
12.5	99.3	190.6	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
12.3	99.3	350.2	At2g22170	816751	lipid-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO	O.I.	C.G.	H.G.
12.3	99.3	68.5	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
12.3	99.3	29.5	At3g15720	820815	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV	O.I.	C.G.	H.G.
12.3	99.3	23.4	At5g51500	835224	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
12.2	99.3	59.7	At5g61220	836243	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
12.1	99.3	91.4	At1g60810	842375	ACLA-2	One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase	O.I.	C.G.	H.G.
12.1	99.3	80.9	At2g43640	818966	signal recognition particle 14 kDa family protein / SRP14 family protein	F:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPO	O.I.	C.G.	H.G.
12.1	99.3	75.3	At1g74210	843761	glycerophosphoryl diester phosphodiesterase family protein	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:vacuole;BOMPFAV	O.I.	C.G.	H.G.
12.0	99.3	107.8	At5g41010	834103	NRPB12	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.	O.I.	C.G.	H.G.
12.0	99.3	60.3	At1g64750	842783	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
11.9	99.3	302.9	At2g38870	818471	protease inhibitor, putative	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
11.9	99.3	294.9	At1g67350	843056	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;P	O.I.	C.G.	H.G.
11.9	99.3	72.8	At5g16060	831463	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
11.6	99.3	78.0	At1g07070	837218	60S ribosomal protein L35a (RPL35aA)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
11.6	99.3	16.1	At5g42060	834211	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.5	99.3	2.7	At4g07840	3770284	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.4	99.3	121.1	At2g37120	818288	DNA-binding S1FA family protein	F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P	O.I.	C.G.	H.G.
11.1	99.2	531.1	At4g39200	830075	40S ribosomal protein S25 (RPS25E)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA	O.I.	C.G.	H.G.
11.1	99.2	119.2	At1g61780	842475	postsynaptic protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
11.1	99.2	84.7	At2g30000	817551	-	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
11.1	99.2	37.6	At1g05210	839261	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
10.9	99.2	79.2	At1g22440	838850	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
10.9	99.2	10.8	At1g27740	839667	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO	O.I.	C.G.	H.G.
10.8	99.2	57.6	At1g73940	843731	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.8	99.2	17.4	At2g28250	817371	NCRK	F:kinase activity;P:xylem histogenesis;C:endosome, endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
10.6	99.2	294.9	At3g06700	819855	60S ribosomal protein L29 (RPL29A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF	O.I.	C.G.	H.G.
10.6	99.2	264.0	At2g25210	817059	60S ribosomal protein L39 (RPL39A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	O.I.	C.G.	H.G.
10.6	99.2	179.5	At3g10090	820170	40S ribosomal protein S28 (RPS28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF	O.I.	C.G.	H.G.
10.6	99.2	168.9	At2g35120	818078	glycine cleavage system H protein, mitochondrial, putative	F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex;BOPMFA	O.I.	C.G.	H.G.
10.4	99.2	61.2	At2g18400	816355	ribosomal protein L6 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA	O.I.	C.G.	H.G.
10.3	99.2	112.8	At1g09330	837454	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOP	O.I.	C.G.	H.G.
10.2	99.2	82.9	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
10.0	99.2	333.5	At3g10860	820256	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;P	O.I.	C.G.	H.G.
10.0	99.2	144.1	At2g39390	818524	60S ribosomal protein L35 (RPL35B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
10.0	99.2	106.1	At4g00585	828026	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMO	O.I.	C.G.	H.G.
9.9	99.1	112.3	At1g16740	838245	ribosomal protein L20 family protein	F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM	O.I.	C.G.	H.G.
9.9	99.1	59.5	At1g79390	844277	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.8	99.1	229.7	At2g46540	819266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P	O.I.	C.G.	H.G.
9.8	99.1	26.1	At3g03420	821258	Ku70-binding family protein	F:binding;P:unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
9.7	99.1	196.1	At4g29480	829069	mitochondrial ATP synthase g subunit family protein	F:hydrogen ion transmembrane transporter activity;P:proton transport, ATP synthesis coupled proton transport;C:mitochondrion;PO	O.I.	C.G.	H.G.
9.7	99.1	24.0	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.6	99.1	123.3	At3g14290	820649	PAE2	Encodes 20S proteasome subunit PAE2 (PAE2).	O.I.	C.G.	H.G.
9.6	99.1	101.4	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
9.5	99.1	125.3	At1g77330	844069	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)	O.I.	C.G.	H.G.
9.5	99.1	90.8	At3g59930	825163	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
9.5	99.1	18.3	At3g25400	822124	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
9.4	99.1	595.5	At2g19730	816492	60S ribosomal protein L28 (RPL28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO	O.I.	C.G.	H.G.

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GSM ID	GSM252680
Assay name	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep2
GSE experiment	GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Microarray experiments to specifically-expressed genes

GSM ID GSM252680 Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep2 GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

GSM ID GSM252680

Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep2

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity