CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM252679

Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
92.3 99.9 161.0 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
69.4 99.9 45.0 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
64.4 99.8 42.6 At3g15240 820755 - - O.I. C.G. H.G.
57.9 99.8 105.4 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
57.0 99.8 119.0 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM O.I. C.G. H.G.
47.0 99.8 36.1 At4g01730 826911 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP O.I. C.G. H.G.
45.2 99.8 29.7 At3g27950 822419 early nodule-specific protein, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
42.9 99.8 55.8 At3g02120 821311 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;P O.I. C.G. H.G.
42.3 99.8 66.0 At5g48310 834884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
41.0 99.8 23.2 At5g48130 834865 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;P O.I. C.G. H.G.
38.1 99.8 35.0 At2g42110 818811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
37.9 99.8 34.2 At1g80370 844377 CYCA2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB O.I. C.G. H.G.
36.7 99.7 119.2 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.7 99.7 53.7 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
34.1 99.7 43.1 At3g19200 821454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.8 99.7 172.0 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
31.7 99.7 66.3 At3g55170 824683 60S ribosomal protein L35 (RPL35C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
31.4 99.7 28.7 At5g05680 830452 nuclear pore complex protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBA O.I. C.G. H.G.
31.1 99.7 136.0 At3g52040 824367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
31.0 99.7 127.3 At1g07070 837218 60S ribosomal protein L35a (RPL35aA) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
30.0 99.7 51.9 At1g17560 838332 HLL (HUELLENLOS) Mutant shows abnormal ovule development O.I. C.G. H.G.
29.7 99.7 39.4 At4g37090 829863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
29.4 99.7 77.5 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
28.9 99.7 32.6 At1g08220 837343 - F:molecular_function unknown;P:mitochondrial proton-transporting ATP synthase complex assembly;C:mitochondrial inner membrane;FPOAM O.I. C.G. H.G.
28.4 99.7 14.4 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
28.1 99.7 10.2 At2g16230 816120 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
27.9 99.7 122.8 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.2 99.7 116.2 At4g34555 829607 40S ribosomal protein S25, putative F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MFPOA O.I. C.G. H.G.
26.9 99.7 172.0 At5g01040 831877 LAC8 (laccase 8) putative laccase, knockout mutant showed early flowering O.I. C.G. H.G.
26.4 99.7 25.7 At3g57360 824903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
26.0 99.7 42.2 At1g46264 841110 AT-HSFB4 member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
24.9 99.6 23.9 At5g53090 835389 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
24.4 99.6 275.4 At4g29735 829095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
24.4 99.6 24.1 At5g60730 836194 anion-transporting ATPase family protein F:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFP O.I. C.G. H.G.
24.2 99.6 44.0 At1g21090 838705 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:anchored to membrane;PMFOB O.I. C.G. H.G.
24.1 99.6 218.3 At2g40360 818629 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA O.I. C.G. H.G.
23.9 99.6 34.1 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM O.I. C.G. H.G.
23.7 99.6 23.4 At1g26660 839206 c-myc binding protein, putative / prefoldin, putative F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAB O.I. C.G. H.G.
23.6 99.6 58.8 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
23.1 99.6 767.4 At4g39200 830075 40S ribosomal protein S25 (RPS25E) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA O.I. C.G. H.G.
23.0 99.6 62.8 At2g24170 816951 endomembrane protein 70, putative F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB O.I. C.G. H.G.
23.0 99.6 58.7 At2g19670 816486 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA O.I. C.G. H.G.
22.9 99.6 24.1 At2g28620 817411 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
22.8 99.6 33.9 At2g34570 818021 MEE21 (maternal effect embryo arrest 21) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;MFOP O.I. C.G. H.G.
22.6 99.6 187.3 At1g54690 841910 GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. O.I. C.G. H.G.
22.6 99.6 34.0 At3g03170 821064 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.5 99.6 22.5 At4g35620 829714 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB O.I. C.G. H.G.
22.5 99.6 20.5 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
22.0 99.6 41.3 At5g56090 835708 COX15 (cytochrome c oxidase 15) Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor. O.I. C.G. H.G.
21.8 99.6 51.9 At1g21700 838774 ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003). O.I. C.G. H.G.
21.5 99.6 89.6 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
21.4 99.6 284.3 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
21.1 99.6 75.4 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
21.1 99.6 11.7 At4g28170 828932 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.0 99.6 19.2 At3g62050 825378 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM O.I. C.G. H.G.
20.9 99.6 17.1 At3g06840 819868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.4 99.6 162.1 At2g28020 817346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.3 99.6 19.2 At5g15510 831404 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBV O.I. C.G. H.G.
20.3 99.6 14.5 At5g39820 833978 anac094 (Arabidopsis NAC domain containing protein 94) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
20.2 99.6 199.0 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
19.8 99.6 20.7 At3g62280 825401 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
19.7 99.6 25.2 At4g33100 829447 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
19.6 99.6 11.0 At1g26700 839211 MLO14 (MILDEW RESISTANCE LOCUS O 14) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
19.5 99.6 53.9 At4g15640 827241 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
19.5 99.6 49.7 At1g05210 839261 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
19.4 99.6 27.3 At4g23590 828459 aminotransferase class I and II family protein F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
19.3 99.6 124.1 At3g06320 819806 ribosomal protein L33 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF O.I. C.G. H.G.
19.0 99.5 288.1 At5g66680 836801 DGL1 Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins. O.I. C.G. H.G.
19.0 99.5 95.1 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
18.6 99.5 49.7 At1g16610 838230 SR45 SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. O.I. C.G. H.G.
18.5 99.5 36.4 At5g15980 831455 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF O.I. C.G. H.G.
18.3 99.5 207.4 At5g02610 831853 60S ribosomal protein L35 (RPL35D) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFP O.I. C.G. H.G.
18.0 99.5 35.6 At3g15720 820815 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV O.I. C.G. H.G.
17.9 99.5 79.6 At1g50490 841471 UBC20 (ubiquitin-conjugating enzyme 20) Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells. O.I. C.G. H.G.
17.9 99.5 66.0 At3g23410 821922 alcohol oxidase-related Encodes a fatty alcohol oxidase. O.I. C.G. H.G.
17.7 99.5 32.7 At1g06720 837182 - F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVA O.I. C.G. H.G.
17.3 99.5 142.6 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
17.3 99.5 30.8 At5g10510 830915 AIL6 (AINTEGUMENTA-LIKE 6) Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. O.I. C.G. H.G.
17.2 99.5 12.3 At2g20480 816568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.9 99.5 59.5 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
16.9 99.5 50.7 At5g45600 834599 GAS41 The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man. O.I. C.G. H.G.
16.8 99.5 45.3 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.8 99.5 36.8 At4g10620 826654 - F:unknown;P:biological_process unknown;C:chloroplast;BMFOPA O.I. C.G. H.G.
16.6 99.5 356.4 At5g64140 836535 RPS28 (RIBOSOMAL PROTEIN S28) Encodes a putative ribosomal protein S28. O.I. C.G. H.G.
16.5 99.5 26.5 At2g32590 817819 - F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPV O.I. C.G. H.G.
16.3 99.5 102.7 At3g19910 821529 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
16.3 99.5 79.7 At1g69040 843236 ACR4 (ACT REPEAT 4) ACT-domain containing protein involved in feedback regulation of amino acid metabolism O.I. C.G. H.G.
16.2 99.5 64.0 At5g09770 830837 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMP O.I. C.G. H.G.
16.2 99.5 36.4 At4g02400 828039 - F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA O.I. C.G. H.G.
16.2 99.5 10.2 At2g04480 814988 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.1 99.5 14.7 At5g48170 834869 SLY2 (SLEEPY2) encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. O.I. C.G. H.G.
16.0 99.5 84.3 At4g30800 829203 40S ribosomal protein S11 (RPS11B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP O.I. C.G. H.G.
15.9 99.5 77.9 At5g60950 836216 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.7 99.5 68.7 At4g16170 827309 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO O.I. C.G. H.G.
15.7 99.5 67.5 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
15.7 99.5 18.5 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
15.7 99.5 12.2 At2g31725 817729 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
15.5 99.5 568.4 At4g29390 829060 40S ribosomal protein S30 (RPS30B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV O.I. C.G. H.G.
15.5 99.5 18.7 At1g26870 837796 FEZ (FEZ) F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;P O.I. C.G. H.G.
15.5 99.5 16.5 At5g07040 830595 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
92.3	99.9	161.0	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
69.4	99.9	45.0	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
64.4	99.8	42.6	At3g15240	820755	-	-	O.I.	C.G.	H.G.
57.9	99.8	105.4	At3g04320	819587	endopeptidase inhibitor	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
57.0	99.8	119.0	At5g35940	833584	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
47.0	99.8	36.1	At4g01730	826911	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP	O.I.	C.G.	H.G.
45.2	99.8	29.7	At3g27950	822419	early nodule-specific protein, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
42.9	99.8	55.8	At3g02120	821311	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.3	99.8	66.0	At5g48310	834884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
41.0	99.8	23.2	At5g48130	834865	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;P	O.I.	C.G.	H.G.
38.1	99.8	35.0	At2g42110	818811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
37.9	99.8	34.2	At1g80370	844377	CYCA2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB	O.I.	C.G.	H.G.
36.7	99.7	119.2	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.7	99.7	53.7	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
34.1	99.7	43.1	At3g19200	821454	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.8	99.7	172.0	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
31.7	99.7	66.3	At3g55170	824683	60S ribosomal protein L35 (RPL35C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
31.4	99.7	28.7	At5g05680	830452	nuclear pore complex protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBA	O.I.	C.G.	H.G.
31.1	99.7	136.0	At3g52040	824367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
31.0	99.7	127.3	At1g07070	837218	60S ribosomal protein L35a (RPL35aA)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
30.0	99.7	51.9	At1g17560	838332	HLL (HUELLENLOS)	Mutant shows abnormal ovule development	O.I.	C.G.	H.G.
29.7	99.7	39.4	At4g37090	829863	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
29.4	99.7	77.5	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
28.9	99.7	32.6	At1g08220	837343	-	F:molecular_function unknown;P:mitochondrial proton-transporting ATP synthase complex assembly;C:mitochondrial inner membrane;FPOAM	O.I.	C.G.	H.G.
28.4	99.7	14.4	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
28.1	99.7	10.2	At2g16230	816120	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
27.9	99.7	122.8	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.2	99.7	116.2	At4g34555	829607	40S ribosomal protein S25, putative	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MFPOA	O.I.	C.G.	H.G.
26.9	99.7	172.0	At5g01040	831877	LAC8 (laccase 8)	putative laccase, knockout mutant showed early flowering	O.I.	C.G.	H.G.
26.4	99.7	25.7	At3g57360	824903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
26.0	99.7	42.2	At1g46264	841110	AT-HSFB4	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
24.9	99.6	23.9	At5g53090	835389	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
24.4	99.6	275.4	At4g29735	829095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
24.4	99.6	24.1	At5g60730	836194	anion-transporting ATPase family protein	F:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFP	O.I.	C.G.	H.G.
24.2	99.6	44.0	At1g21090	838705	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:anchored to membrane;PMFOB	O.I.	C.G.	H.G.
24.1	99.6	218.3	At2g40360	818629	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA	O.I.	C.G.	H.G.
23.9	99.6	34.1	At3g23470	821928	cyclopropane-fatty-acyl-phospholipid synthase	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM	O.I.	C.G.	H.G.
23.7	99.6	23.4	At1g26660	839206	c-myc binding protein, putative / prefoldin, putative	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAB	O.I.	C.G.	H.G.
23.6	99.6	58.8	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
23.1	99.6	767.4	At4g39200	830075	40S ribosomal protein S25 (RPS25E)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA	O.I.	C.G.	H.G.
23.0	99.6	62.8	At2g24170	816951	endomembrane protein 70, putative	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB	O.I.	C.G.	H.G.
23.0	99.6	58.7	At2g19670	816486	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
22.9	99.6	24.1	At2g28620	817411	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
22.8	99.6	33.9	At2g34570	818021	MEE21 (maternal effect embryo arrest 21)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;MFOP	O.I.	C.G.	H.G.
22.6	99.6	187.3	At1g54690	841910	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.	O.I.	C.G.	H.G.
22.6	99.6	34.0	At3g03170	821064	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.5	99.6	22.5	At4g35620	829714	CYCB2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB	O.I.	C.G.	H.G.
22.5	99.6	20.5	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
22.0	99.6	41.3	At5g56090	835708	COX15 (cytochrome c oxidase 15)	Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.	O.I.	C.G.	H.G.
21.8	99.6	51.9	At1g21700	838774	ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C)	a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).	O.I.	C.G.	H.G.
21.5	99.6	89.6	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
21.4	99.6	284.3	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
21.1	99.6	75.4	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
21.1	99.6	11.7	At4g28170	828932	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.0	99.6	19.2	At3g62050	825378	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM	O.I.	C.G.	H.G.
20.9	99.6	17.1	At3g06840	819868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.4	99.6	162.1	At2g28020	817346	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.3	99.6	19.2	At5g15510	831404	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBV	O.I.	C.G.	H.G.
20.3	99.6	14.5	At5g39820	833978	anac094 (Arabidopsis NAC domain containing protein 94)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
20.2	99.6	199.0	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
19.8	99.6	20.7	At3g62280	825401	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
19.7	99.6	25.2	At4g33100	829447	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
19.6	99.6	11.0	At1g26700	839211	MLO14 (MILDEW RESISTANCE LOCUS O 14)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
19.5	99.6	53.9	At4g15640	827241	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
19.5	99.6	49.7	At1g05210	839261	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
19.4	99.6	27.3	At4g23590	828459	aminotransferase class I and II family protein	F:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
19.3	99.6	124.1	At3g06320	819806	ribosomal protein L33 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	C.G.	H.G.
19.0	99.5	288.1	At5g66680	836801	DGL1	Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.	O.I.	C.G.	H.G.
19.0	99.5	95.1	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
18.6	99.5	49.7	At1g16610	838230	SR45	SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.	O.I.	C.G.	H.G.
18.5	99.5	36.4	At5g15980	831455	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF	O.I.	C.G.	H.G.
18.3	99.5	207.4	At5g02610	831853	60S ribosomal protein L35 (RPL35D)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFP	O.I.	C.G.	H.G.
18.0	99.5	35.6	At3g15720	820815	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV	O.I.	C.G.	H.G.
17.9	99.5	79.6	At1g50490	841471	UBC20 (ubiquitin-conjugating enzyme 20)	Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.	O.I.	C.G.	H.G.
17.9	99.5	66.0	At3g23410	821922	alcohol oxidase-related	Encodes a fatty alcohol oxidase.	O.I.	C.G.	H.G.
17.7	99.5	32.7	At1g06720	837182	-	F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVA	O.I.	C.G.	H.G.
17.3	99.5	142.6	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
17.3	99.5	30.8	At5g10510	830915	AIL6 (AINTEGUMENTA-LIKE 6)	Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.	O.I.	C.G.	H.G.
17.2	99.5	12.3	At2g20480	816568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.9	99.5	59.5	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
16.9	99.5	50.7	At5g45600	834599	GAS41	The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.	O.I.	C.G.	H.G.
16.8	99.5	45.3	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.8	99.5	36.8	At4g10620	826654	-	F:unknown;P:biological_process unknown;C:chloroplast;BMFOPA	O.I.	C.G.	H.G.
16.6	99.5	356.4	At5g64140	836535	RPS28 (RIBOSOMAL PROTEIN S28)	Encodes a putative ribosomal protein S28.	O.I.	C.G.	H.G.
16.5	99.5	26.5	At2g32590	817819	-	F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPV	O.I.	C.G.	H.G.
16.3	99.5	102.7	At3g19910	821529	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
16.3	99.5	79.7	At1g69040	843236	ACR4 (ACT REPEAT 4)	ACT-domain containing protein involved in feedback regulation of amino acid metabolism	O.I.	C.G.	H.G.
16.2	99.5	64.0	At5g09770	830837	ribosomal protein L17 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMP	O.I.	C.G.	H.G.
16.2	99.5	36.4	At4g02400	828039	-	F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA	O.I.	C.G.	H.G.
16.2	99.5	10.2	At2g04480	814988	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.1	99.5	14.7	At5g48170	834869	SLY2 (SLEEPY2)	encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism.	O.I.	C.G.	H.G.
16.0	99.5	84.3	At4g30800	829203	40S ribosomal protein S11 (RPS11B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP	O.I.	C.G.	H.G.
15.9	99.5	77.9	At5g60950	836216	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.7	99.5	68.7	At4g16170	827309	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO	O.I.	C.G.	H.G.
15.7	99.5	67.5	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
15.7	99.5	18.5	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
15.7	99.5	12.2	At2g31725	817729	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
15.5	99.5	568.4	At4g29390	829060	40S ribosomal protein S30 (RPS30B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV	O.I.	C.G.	H.G.
15.5	99.5	18.7	At1g26870	837796	FEZ (FEZ)	F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;P	O.I.	C.G.	H.G.
15.5	99.5	16.5	At5g07040	830595	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV	O.I.	C.G.	H.G.

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GSM ID	GSM252679
Assay name	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1
GSE experiment	GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Microarray experiments to specifically-expressed genes

GSM ID GSM252679 Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1 GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

GSM ID GSM252679

Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 22 hrs Taking 70 mm of Stump (4dpg) rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity