Microarray experiments to specifically-expressed genes

GSM ID GSM252676
Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 13 hrs Taking 70 mm of Stump (4dpg) rep2
GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
97.199.9108.8At1g54890841928late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
90.399.9183.6At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
57.599.891.8At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
37.799.785.1At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
37.599.796.6At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
34.899.7159.9At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
33.299.7134.1At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.999.768.6At4g17190827430FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.O.I.C.G.H.G.
28.299.764.4At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.799.762.5At1g13590837920ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.O.I.C.G.H.G.
25.299.637.1At3g19200821454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.099.6248.4At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
22.699.630.9At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.599.648.1At4g31320829259auxin-responsive protein, putative / small auxin up RNA (SAUR_C)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
21.599.642.3At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
19.199.610.7At3g59850825155polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
19.099.530.4At3g23470821928cyclopropane-fatty-acyl-phospholipid synthaseF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAMO.I.C.G.H.G.
18.599.598.4At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
18.599.558.7At3g62810825456complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
18.599.518.6At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
18.499.5263.6At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
18.099.5110.1At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
17.799.515.2At1g73160843647glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPMO.I.C.G.H.G.
17.599.5110.4At1g17490838322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.599.581.5At5g60950836216COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.399.5184.8At2g40360818629transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVAO.I.C.G.H.G.
17.099.580.5At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
15.399.4317.5At2g2521081705960S ribosomal protein L39 (RPL39A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
15.399.439.1At2g19385816457zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBO.I.C.G.H.G.
15.299.4246.4At3g0668081985360S ribosomal protein L29 (RPL29B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPFO.I.C.G.H.G.
15.299.426.0At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
15.199.421.1At1g56680842124glycoside hydrolase family 19 proteinF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
14.999.4109.0At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
14.799.4136.7At1g16740838245ribosomal protein L20 family proteinF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.C.G.H.G.
14.599.4333.0At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
14.599.4136.5At2g03870814913small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOPO.I.C.G.H.G.
14.599.480.4At5g16060831463-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
14.599.466.8At1g73940843731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.199.4339.5At3g0670081985560S ribosomal protein L29 (RPL29A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPFO.I.C.G.H.G.
14.199.444.2At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
14.099.473.7At1g16000838170unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.099.439.7At1g23750838985DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PAOO.I.C.G.H.G.
13.999.4205.6At3g1009082017040S ribosomal protein S28 (RPS28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFO.I.C.G.H.G.
13.999.465.1At1g64750842783ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
13.799.4369.9At2g22170816751lipid-associated family proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMOO.I.C.G.H.G.
13.799.494.1At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
13.799.451.5At1g62810842580copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
13.799.423.8At1g02430839242ATARFD1B (ADP-ribosylation factor D1B)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.O.I.C.G.H.G.
13.799.413.4At1g50520841474CYP705A27member of CYP705AO.I.C.G.H.G.
13.699.4167.8At2g3939081852460S ribosomal protein L35 (RPL35B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
13.399.411.3At2g31725817729unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
13.299.4291.2At1g66270842944BGLU21F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFAO.I.C.G.H.G.
13.099.4520.9At4g2939082906040S ribosomal protein S30 (RPS30B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAVO.I.C.G.H.G.
13.099.4313.3At4g10480826640nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPABVO.I.C.G.H.G.
12.999.353.3At1g08780837400AIP3 (ABI3-INTERACTING PROTEIN 3)F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAO.I.C.G.H.G.
12.799.3126.2At3g54960824661ATPDIL1-3 (PDI-LIKE 1-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.O.I.C.G.H.G.
12.699.3205.2At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
12.699.377.5At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
12.699.353.8At5g20400832162oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.O.I.C.G.H.G.
12.599.3139.3At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.H.G.
12.599.313.2At3g06840819868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.499.3117.2At1g17180838289ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
12.499.395.0At5g58590835973RANBP1 (RAN BINDING PROTEIN 1)Encodes a Ran-binding protein 1 homolog (RanBP1).O.I.C.G.H.G.
12.399.348.0At2g07340815304prefoldin-related KE2 family proteinF:unfolded protein binding;P:protein folding;C:prefoldin complex;MFAPOO.I.C.G.H.G.
12.399.321.1At4g29430829064rps15ae (ribosomal protein S15A E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPFO.I.C.G.H.G.
12.199.346.1At1g23410838949ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVABO.I.C.G.H.G.
11.799.325.1At2g41810818780-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
11.699.356.6At4g22930828392PYR4 (PYRIMIDIN 4)Encodes dihydroorotase (PYR4).O.I.C.G.H.G.
11.699.335.4At5g3980083397660S ribosomal protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOO.I.C.G.H.G.
11.599.3153.7At1g61570842453TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.O.I.C.G.H.G.
11.499.3257.4At5g6751083688760S ribosomal protein L26 (RPL26B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPBO.I.C.G.H.G.
11.499.3136.1At5g14800831332P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.O.I.C.G.H.G.
11.499.321.0At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
11.399.342.7At3g17300820993-F:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
11.299.2292.1At3g12390820418nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:unknown;P:response to salt stress;C:cytosolic ribosome;MOFBPVAO.I.C.G.H.G.
11.199.265.2At3g01740821088-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
11.099.2314.3At4g3198582932960S ribosomal protein L39 (RPL39C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
11.099.225.6At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
10.999.2110.9At4g00585828026unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMOO.I.C.G.H.G.
10.999.290.1At1g01210839481DNA-directed RNA polymerase III family proteinF:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAPO.I.C.G.H.G.
10.999.245.6At4g29520829073-F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFAO.I.C.G.H.G.
10.999.241.9At3g50900824254unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.999.27.6At5g59070836024glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;BOAPMFO.I.C.G.H.G.
10.899.2121.1At4g2589082869560S acidic ribosomal protein P3 (RPP3A)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOBO.I.C.G.H.G.
10.899.290.4At1g72170843548unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPOO.I.C.G.H.G.
10.899.239.7At5g44710834500-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOO.I.C.G.H.G.
10.699.2349.6At2g4346081894760S ribosomal protein L38 (RPL38A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
10.699.2103.6At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
10.699.274.0At1g04870839393PRMT10Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.C.G.H.G.
10.699.227.2At3g03420821258Ku70-binding family proteinF:binding;P:unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
10.599.299.0At5g54900835581ATRBP45A (RNA-binding protein 45A)F:RNA binding;P:unknown;C:unknown;MPFOBAO.I.C.G.H.G.
10.599.238.8At2g43780818981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
10.499.2445.5At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
10.499.2158.3At1g7427084376760S ribosomal protein L35a (RPL35aC)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
10.399.254.9At5g61220836243complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
10.399.246.4At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.O.I.C.G.H.G.
10.299.2496.4At1g0959083748660S ribosomal protein L21 (RPL21A)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, chloroplast;MOAFPO.I.C.G.H.G.
10.299.229.8At2g14460815934unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.199.2169.8At3g5870082503960S ribosomal protein L11 (RPL11B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole;BOAMPFO.I.C.G.H.G.
10.199.296.9At2g46390819247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.



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