Microarray experiments to specifically-expressed genes

GSM ID GSM252673
Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep3
GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
59.499.8121.5At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
39.899.8171.0At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
38.199.84.1At1g352003766935-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
34.699.769.8At1g13590837920ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.O.I.C.G.H.G.
30.699.761.1At1g54890841928late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.499.7307.6At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
23.799.695.2At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
23.399.658.5At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
23.299.693.2At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
22.899.6171.5At2g03870814913small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOPO.I.C.G.H.G.
22.299.6213.2At1g61570842453TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.O.I.C.G.H.G.
21.999.614.5At2g31725817729unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
21.399.656.5At5g57120835816-F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVAO.I.C.G.H.G.
21.199.6733.8At4g3920083007540S ribosomal protein S25 (RPS25E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOAO.I.C.G.H.G.
20.299.6180.1At1g78340844169ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
20.199.62.6At3g322203769256transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
20.099.6115.8At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
18.899.5379.3At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
18.299.5346.0At2g2521081705960S ribosomal protein L39 (RPL39A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
17.399.5189.4At2g3939081852460S ribosomal protein L35 (RPL35B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
17.299.5119.0At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.999.5372.8At3g0670081985560S ribosomal protein L29 (RPL29A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPFO.I.C.G.H.G.
16.999.594.1At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
16.799.580.4At1g16000838170unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.699.5340.0At4g2941082906260S ribosomal protein L28 (RPL28C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFOO.I.C.G.H.G.
15.599.5154.8At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.H.G.
15.499.535.7At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
15.299.427.0At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.099.490.1At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.099.453.0At2g07340815304prefoldin-related KE2 family proteinF:unfolded protein binding;P:protein folding;C:prefoldin complex;MFAPOO.I.C.G.H.G.
14.999.425.8At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
14.599.4240.9At3g0668081985360S ribosomal protein L29 (RPL29B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPFO.I.C.G.H.G.
14.499.452.8At1g62810842580copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
14.299.4521.8At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
14.299.451.9At4g29520829073-F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFAO.I.C.G.H.G.
14.199.4133.8At1g16740838245ribosomal protein L20 family proteinF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.C.G.H.G.
14.199.444.2At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
14.099.435.4At1g17560838332HLL (HUELLENLOS)Mutant shows abnormal ovule developmentO.I.C.G.H.G.
13.999.4205.3At3g1009082017040S ribosomal protein S28 (RPS28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFO.I.C.G.H.G.
13.899.4118.0At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
13.899.420.4At1g64490842757unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
13.699.4178.9At5g0261083185360S ribosomal protein L35 (RPL35D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFPO.I.C.G.H.G.
13.699.425.1At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.699.410.6At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.O.I.C.G.H.G.
13.399.4527.0At4g2939082906040S ribosomal protein S30 (RPS30B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAVO.I.C.G.H.G.
13.399.4129.0At3g54960824661ATPDIL1-3 (PDI-LIKE 1-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.O.I.C.G.H.G.
13.199.450.1At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.199.49.8At3g496308241252-oxoacid-dependent oxidase, putativeF:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFMO.I.C.G.H.G.
12.499.3268.3At5g6751083688760S ribosomal protein L26 (RPL26B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPBO.I.C.G.H.G.
12.499.342.2At1g02330839367-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
12.199.398.3At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
11.899.3284.0At3g4737082389140S ribosomal protein S20 (RPS20B)F:structural constituent of ribosome, RNA binding;P:translation;C:in 6 components;BOMAPFO.I.C.G.H.G.
11.899.38.2At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
11.799.310.4At5g47440834792phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO.I.C.G.H.G.
11.299.213.0At5g46590834702anac096 (Arabidopsis NAC domain containing protein 96)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
11.199.2444.5At3g0950082010760S ribosomal protein L35 (RPL35A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFPO.I.C.G.H.G.
11.199.2289.7At3g12390820418nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:unknown;P:response to salt stress;C:cytosolic ribosome;MOFBPVAO.I.C.G.H.G.
11.199.2127.7At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
11.199.247.4At1g79150844256bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
11.099.2645.1At2g1973081649260S ribosomal protein L28 (RPL28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFOO.I.C.G.H.G.
11.099.246.1At4g38410829998dehydrin, putativeF:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
10.999.2181.6At5g22580832321-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOFO.I.C.G.H.G.
10.899.2407.9At5g4793083484440S ribosomal protein S27 (RPS27D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MOPFAO.I.C.G.H.G.
10.899.2316.0At1g54580841900ACP2 (ACYL CARRIER PROTEIN 2)encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light but downregulated by starvation and upregulated by increased level of exogenous sucrose.O.I.C.G.H.G.
10.899.2311.5At4g3198582932960S ribosomal protein L39 (RPL39C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
10.899.2245.8At5g65020836626ANNAT2 (Annexin Arabidopsis 2)Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.O.I.C.G.H.G.
10.899.247.7At2g45730819181eukaryotic initiation factor 3 gamma subunit family proteinF:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
10.699.224.0At3g19200821454unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.223.5At4g37090829863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
10.599.262.6At2g25670817108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
10.599.262.4At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.C.G.H.G.
10.599.241.1At3g17300820993-F:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
10.499.232.2At5g48240834877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPBO.I.C.G.H.G.
10.499.227.7At5g5924083604240S ribosomal protein S8 (RPS8B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFPO.I.C.G.H.G.
10.399.213.8At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
10.299.277.2At3g05060819668SAR DNA-binding protein, putativeSAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like proteinO.I.C.G.H.G.
10.299.247.4At1g08780837400AIP3 (ABI3-INTERACTING PROTEIN 3)F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAO.I.C.G.H.G.
10.199.2374.6At4g2623082872960S ribosomal protein L31 (RPL31B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPAFBO.I.C.G.H.G.
10.199.2239.2At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
10.199.2236.8At3g5258082442440S ribosomal protein S14 (RPS14C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.C.G.H.G.
10.199.262.1At3g01740821088-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
9.999.1112.6At2g02990814828RNS1 (RIBONUCLEASE 1)member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.O.I.C.G.H.G.
9.999.129.3At2g14460815934unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.161.6At1g14620838024DECOY (DECOY)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBO.I.C.G.H.G.
9.899.124.3At1g06720837182-F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVAO.I.C.G.H.G.
9.699.1429.9At3g2339082192060S ribosomal protein L36a/L44 (RPL36aA)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFAPBO.I.C.G.H.G.
9.699.1403.2At2g4020581861260S ribosomal protein L41 (RPL41C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFOO.I.C.G.H.G.
9.599.1102.4At1g17180838289ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
9.599.115.4At3g57360824903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
9.499.1449.2At2g3719081829560S ribosomal protein L12 (RPL12A)F:structural constituent of ribosome;P:response to cold, ribosome biogenesis;C:in 7 components;MBAOFPO.I.C.G.H.G.
9.499.155.0At1g48160841235signal recognition particle 19 kDa protein, putative / SRP19, putativeF:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOPO.I.C.G.H.G.
9.399.1357.7At1g4883084130540S ribosomal protein S7 (RPS7A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast;MPOFO.I.C.G.H.G.
9.399.174.4At3g52040824367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.399.121.9At5g40540834052protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
9.399.12.0At3g28380822467PGP17 (P-GLYCOPROTEIN 17)F:ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
9.299.1427.4At5g5671083577260S ribosomal protein L31 (RPL31C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, cell wall;MOPAFBO.I.C.G.H.G.
9.299.1264.2At4g10480826640nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPABVO.I.C.G.H.G.
9.299.119.7At5g22320832292leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAO.I.C.G.H.G.
9.199.1333.8At3g48930824054EMB1080 (embryo defective 1080)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFPO.I.C.G.H.G.
9.199.195.1At1g14610838023TWN2 (TWIN 2)Required for proper proliferation of basal cells.O.I.C.G.H.G.



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