CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM252671

Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
88.7 99.9 148.5 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM O.I. C.G. H.G.
49.0 99.8 189.9 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
47.7 99.8 133.5 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
44.2 99.8 409.0 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
43.2 99.8 91.5 At1g62810 842580 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
41.7 99.8 71.3 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.7 99.7 115.1 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
32.7 99.7 38.1 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
30.1 99.7 127.6 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.3 99.7 155.4 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.1 99.7 198.9 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
27.0 99.7 62.9 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
23.1 99.6 43.8 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
23.1 99.6 20.2 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.0 99.6 42.7 At2g14460 815934 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.4 99.6 24.4 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
20.4 99.6 10.8 At5g52170 835293 HDG7 (HOMEODOMAIN GLABROUS 7) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
20.2 99.6 259.6 At3g57150 824882 NAP57 (Arabidopsis thaliana homologue of NAP57) Encodes a putative pseudouridine synthase (NAP57). O.I. C.G. H.G.
19.9 99.6 53.0 At1g13590 837920 ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR) Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. O.I. C.G. H.G.
18.9 99.5 153.5 At3g54960 824661 ATPDIL1-3 (PDI-LIKE 1-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.
18.5 99.5 33.2 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.9 99.5 51.4 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.6 99.5 91.5 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
17.6 99.5 57.3 At3g62810 825456 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
17.6 99.5 30.2 At5g09980 830859 PROPEP4 (Elicitor peptide 4 precursor) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;P O.I. C.G. H.G.
17.0 99.5 183.5 At2g40360 818629 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA O.I. C.G. H.G.
16.7 99.5 224.9 At5g22580 832321 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF O.I. C.G. H.G.
16.4 99.5 17.5 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
16.1 99.5 10.8 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
15.3 99.4 139.3 At1g16740 838245 ribosomal protein L20 family protein F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM O.I. C.G. H.G.
15.1 99.4 351.5 At3g06700 819855 60S ribosomal protein L29 (RPL29A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF O.I. C.G. H.G.
15.1 99.4 315.3 At2g25210 817059 60S ribosomal protein L39 (RPL39A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP O.I. C.G. H.G.
15.1 99.4 45.8 At3g55170 824683 60S ribosomal protein L35 (RPL35C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
15.1 99.4 26.9 At4g37400 829894 CYP81F3 member of CYP81F O.I. C.G. H.G.
14.9 99.4 99.9 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
14.8 99.4 73.7 At3g02900 821188 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB O.I. C.G. H.G.
14.7 99.4 173.4 At1g61570 842453 TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13) Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space. O.I. C.G. H.G.
14.7 99.4 12.1 At2g24560 816992 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
14.5 99.4 194.2 At4g29840 829106 MTO2 (METHIONINE OVER-ACCUMULATOR 2) threonine synthase O.I. C.G. H.G.
14.3 99.4 127.1 At4g00585 828026 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMO O.I. C.G. H.G.
13.9 99.4 56.7 At5g20400 832162 oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. O.I. C.G. H.G.
13.5 99.4 72.3 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.4 99.4 11.1 At5g47440 834792 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF O.I. C.G. H.G.
13.3 99.4 143.4 At1g54690 841910 GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. O.I. C.G. H.G.
13.3 99.4 42.0 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
13.2 99.4 363.4 At2g22170 816751 lipid-associated family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO O.I. C.G. H.G.
13.1 99.4 102.4 At3g06320 819806 ribosomal protein L33 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF O.I. C.G. H.G.
12.9 99.3 287.9 At1g66270 842944 BGLU21 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA O.I. C.G. H.G.
12.9 99.3 128.9 At2g03870 814913 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOP O.I. C.G. H.G.
12.8 99.3 25.1 At4g31930 829323 mitochondrial glycoprotein family protein / MAM33 family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFO O.I. C.G. H.G.
12.6 99.3 119.5 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
12.6 99.3 110.4 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
12.6 99.3 36.9 At5g39800 833976 60S ribosomal protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPO O.I. C.G. H.G.
12.3 99.3 188.7 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
12.2 99.3 68.1 At3g01740 821088 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
12.0 99.3 499.3 At4g29390 829060 40S ribosomal protein S30 (RPS30B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV O.I. C.G. H.G.
11.9 99.3 262.6 At5g67510 836887 60S ribosomal protein L26 (RPL26B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPB O.I. C.G. H.G.
11.9 99.3 114.3 At5g01040 831877 LAC8 (laccase 8) putative laccase, knockout mutant showed early flowering O.I. C.G. H.G.
11.9 99.3 51.2 At1g08780 837400 AIP3 (ABI3-INTERACTING PROTEIN 3) F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA O.I. C.G. H.G.
11.8 99.3 161.5 At1g30880 839972 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
11.8 99.3 156.7 At2g39390 818524 60S ribosomal protein L35 (RPL35B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
11.8 99.3 30.6 At1g72730 843605 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cytosol, plasma membrane, plant-type cell wall;BOMFPAV O.I. C.G. H.G.
11.7 99.3 87.0 At2g30000 817551 - F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
11.7 99.3 42.4 At3g13845 820597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.6 99.3 218.7 At2g20530 816575 ATPHB6 (PROHIBITIN 6) F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, respiratory chain complex I, membrane;BOMFPAV O.I. C.G. H.G.
11.6 99.3 104.0 At5g54900 835581 ATRBP45A (RNA-binding protein 45A) F:RNA binding;P:unknown;C:unknown;MPFOBA O.I. C.G. H.G.
11.6 99.3 49.6 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
11.5 99.3 66.7 At1g14620 838024 DECOY (DECOY) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOB O.I. C.G. H.G.
11.4 99.3 135.4 At1g78340 844169 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
11.3 99.3 293.9 At5g64140 836535 RPS28 (RIBOSOMAL PROTEIN S28) Encodes a putative ribosomal protein S28. O.I. C.G. H.G.
11.3 99.3 245.8 At1g57660 842142 60S ribosomal protein L21 (RPL21E) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOAFP O.I. C.G. H.G.
11.3 99.3 65.0 At2g25670 817108 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
11.3 99.3 1.9 At2g10840 3768125 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.0 99.2 90.4 At1g01210 839481 DNA-directed RNA polymerase III family protein F:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAP O.I. C.G. H.G.
10.9 99.2 11.9 At1g73160 843647 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM O.I. C.G. H.G.
10.8 99.2 58.9 At1g48160 841235 signal recognition particle 19 kDa protein, putative / SRP19, putative F:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOP O.I. C.G. H.G.
10.8 99.2 10.2 At2g31725 817729 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
10.6 99.2 281.0 At4g29410 829062 60S ribosomal protein L28 (RPL28C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFO O.I. C.G. H.G.
10.5 99.2 79.6 At5g12940 831134 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. C.G. H.G.
10.3 99.2 625.9 At2g19730 816492 60S ribosomal protein L28 (RPL28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO O.I. C.G. H.G.
10.3 99.2 301.6 At5g02450 831907 60S ribosomal protein L36 (RPL36C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFP O.I. C.G. H.G.
10.3 99.2 2.1 At1g35200 3766935 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.2 99.2 239.9 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
10.1 99.2 372.8 At1g48830 841305 40S ribosomal protein S7 (RPS7A) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast;MPOF O.I. C.G. H.G.
10.1 99.2 113.5 At1g12000 837752 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to cadmium ion, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane;BOPFMAV O.I. C.G. H.G.
10.1 99.2 45.5 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
10.1 99.2 44.3 At4g38410 829998 dehydrin, putative F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
10.1 99.2 28.7 At1g74490 843790 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
10.0 99.2 275.7 At4g10480 826640 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPABV O.I. C.G. H.G.
10.0 99.2 169.0 At3g58700 825039 60S ribosomal protein L11 (RPL11B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole;BOAMPF O.I. C.G. H.G.
10.0 99.2 144.9 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
10.0 99.2 116.6 At4g25890 828695 60S acidic ribosomal protein P3 (RPP3A) F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOB O.I. C.G. H.G.
10.0 99.2 83.3 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.0 99.2 31.6 At2g19385 816457 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB O.I. C.G. H.G.
9.9 99.1 100.1 At3g02190 820350 60S ribosomal protein L39 (RPL39B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
9.9 99.1 21.9 At3g23470 821928 cyclopropane-fatty-acyl-phospholipid synthase F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM O.I. C.G. H.G.
9.9 99.1 16.8 At2g46410 819249 CPC (CAPRICE) Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. O.I. C.G. H.G.
9.9 99.1 1.4 At1g56530 842106 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
9.8 99.1 70.1 At2g33730 817938 DEAD box RNA helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:nucleus, cytoplasm;BMOFPAV O.I. C.G. H.G.
9.8 99.1 44.7 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
88.7	99.9	148.5	At5g35940	833584	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
49.0	99.8	189.9	At2g25980	817139	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
47.7	99.8	133.5	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
44.2	99.8	409.0	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
43.2	99.8	91.5	At1g62810	842580	copper amine oxidase, putative	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
41.7	99.8	71.3	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.7	99.7	115.1	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
32.7	99.7	38.1	At5g51500	835224	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
30.1	99.7	127.6	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.3	99.7	155.4	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.1	99.7	198.9	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
27.0	99.7	62.9	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
23.1	99.6	43.8	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
23.1	99.6	20.2	At5g62330	836354	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.0	99.6	42.7	At2g14460	815934	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.4	99.6	24.4	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
20.4	99.6	10.8	At5g52170	835293	HDG7 (HOMEODOMAIN GLABROUS 7)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
20.2	99.6	259.6	At3g57150	824882	NAP57 (Arabidopsis thaliana homologue of NAP57)	Encodes a putative pseudouridine synthase (NAP57).	O.I.	C.G.	H.G.
19.9	99.6	53.0	At1g13590	837920	ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)	Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.	O.I.	C.G.	H.G.
18.9	99.5	153.5	At3g54960	824661	ATPDIL1-3 (PDI-LIKE 1-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.
18.5	99.5	33.2	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.9	99.5	51.4	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.6	99.5	91.5	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
17.6	99.5	57.3	At3g62810	825456	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
17.6	99.5	30.2	At5g09980	830859	PROPEP4 (Elicitor peptide 4 precursor)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
17.0	99.5	183.5	At2g40360	818629	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA	O.I.	C.G.	H.G.
16.7	99.5	224.9	At5g22580	832321	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOF	O.I.	C.G.	H.G.
16.4	99.5	17.5	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
16.1	99.5	10.8	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
15.3	99.4	139.3	At1g16740	838245	ribosomal protein L20 family protein	F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM	O.I.	C.G.	H.G.
15.1	99.4	351.5	At3g06700	819855	60S ribosomal protein L29 (RPL29A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF	O.I.	C.G.	H.G.
15.1	99.4	315.3	At2g25210	817059	60S ribosomal protein L39 (RPL39A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	O.I.	C.G.	H.G.
15.1	99.4	45.8	At3g55170	824683	60S ribosomal protein L35 (RPL35C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
15.1	99.4	26.9	At4g37400	829894	CYP81F3	member of CYP81F	O.I.	C.G.	H.G.
14.9	99.4	99.9	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
14.8	99.4	73.7	At3g02900	821188	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	O.I.	C.G.	H.G.
14.7	99.4	173.4	At1g61570	842453	TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)	Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.	O.I.	C.G.	H.G.
14.7	99.4	12.1	At2g24560	816992	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
14.5	99.4	194.2	At4g29840	829106	MTO2 (METHIONINE OVER-ACCUMULATOR 2)	threonine synthase	O.I.	C.G.	H.G.
14.3	99.4	127.1	At4g00585	828026	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMO	O.I.	C.G.	H.G.
13.9	99.4	56.7	At5g20400	832162	oxidoreductase, 2OG-Fe(II) oxygenase family protein	encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.	O.I.	C.G.	H.G.
13.5	99.4	72.3	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.4	99.4	11.1	At5g47440	834792	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
13.3	99.4	143.4	At1g54690	841910	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.	O.I.	C.G.	H.G.
13.3	99.4	42.0	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
13.2	99.4	363.4	At2g22170	816751	lipid-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO	O.I.	C.G.	H.G.
13.1	99.4	102.4	At3g06320	819806	ribosomal protein L33 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	C.G.	H.G.
12.9	99.3	287.9	At1g66270	842944	BGLU21	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA	O.I.	C.G.	H.G.
12.9	99.3	128.9	At2g03870	814913	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOP	O.I.	C.G.	H.G.
12.8	99.3	25.1	At4g31930	829323	mitochondrial glycoprotein family protein / MAM33 family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFO	O.I.	C.G.	H.G.
12.6	99.3	119.5	At2g42570	818857	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
12.6	99.3	110.4	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
12.6	99.3	36.9	At5g39800	833976	60S ribosomal protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
12.3	99.3	188.7	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
12.2	99.3	68.1	At3g01740	821088	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
12.0	99.3	499.3	At4g29390	829060	40S ribosomal protein S30 (RPS30B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV	O.I.	C.G.	H.G.
11.9	99.3	262.6	At5g67510	836887	60S ribosomal protein L26 (RPL26B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPB	O.I.	C.G.	H.G.
11.9	99.3	114.3	At5g01040	831877	LAC8 (laccase 8)	putative laccase, knockout mutant showed early flowering	O.I.	C.G.	H.G.
11.9	99.3	51.2	At1g08780	837400	AIP3 (ABI3-INTERACTING PROTEIN 3)	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA	O.I.	C.G.	H.G.
11.8	99.3	161.5	At1g30880	839972	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
11.8	99.3	156.7	At2g39390	818524	60S ribosomal protein L35 (RPL35B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
11.8	99.3	30.6	At1g72730	843605	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cytosol, plasma membrane, plant-type cell wall;BOMFPAV	O.I.	C.G.	H.G.
11.7	99.3	87.0	At2g30000	817551	-	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
11.7	99.3	42.4	At3g13845	820597	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.6	99.3	218.7	At2g20530	816575	ATPHB6 (PROHIBITIN 6)	F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, respiratory chain complex I, membrane;BOMFPAV	O.I.	C.G.	H.G.
11.6	99.3	104.0	At5g54900	835581	ATRBP45A (RNA-binding protein 45A)	F:RNA binding;P:unknown;C:unknown;MPFOBA	O.I.	C.G.	H.G.
11.6	99.3	49.6	At2g45730	819181	eukaryotic initiation factor 3 gamma subunit family protein	F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
11.5	99.3	66.7	At1g14620	838024	DECOY (DECOY)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOB	O.I.	C.G.	H.G.
11.4	99.3	135.4	At1g78340	844169	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
11.3	99.3	293.9	At5g64140	836535	RPS28 (RIBOSOMAL PROTEIN S28)	Encodes a putative ribosomal protein S28.	O.I.	C.G.	H.G.
11.3	99.3	245.8	At1g57660	842142	60S ribosomal protein L21 (RPL21E)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOAFP	O.I.	C.G.	H.G.
11.3	99.3	65.0	At2g25670	817108	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
11.3	99.3	1.9	At2g10840	3768125	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.0	99.2	90.4	At1g01210	839481	DNA-directed RNA polymerase III family protein	F:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAP	O.I.	C.G.	H.G.
10.9	99.2	11.9	At1g73160	843647	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPM	O.I.	C.G.	H.G.
10.8	99.2	58.9	At1g48160	841235	signal recognition particle 19 kDa protein, putative / SRP19, putative	F:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOP	O.I.	C.G.	H.G.
10.8	99.2	10.2	At2g31725	817729	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
10.6	99.2	281.0	At4g29410	829062	60S ribosomal protein L28 (RPL28C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFO	O.I.	C.G.	H.G.
10.5	99.2	79.6	At5g12940	831134	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA	O.I.	C.G.	H.G.
10.3	99.2	625.9	At2g19730	816492	60S ribosomal protein L28 (RPL28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO	O.I.	C.G.	H.G.
10.3	99.2	301.6	At5g02450	831907	60S ribosomal protein L36 (RPL36C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFP	O.I.	C.G.	H.G.
10.3	99.2	2.1	At1g35200	3766935	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.2	99.2	239.9	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
10.1	99.2	372.8	At1g48830	841305	40S ribosomal protein S7 (RPS7A)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast;MPOF	O.I.	C.G.	H.G.
10.1	99.2	113.5	At1g12000	837752	pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to cadmium ion, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane;BOPFMAV	O.I.	C.G.	H.G.
10.1	99.2	45.5	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
10.1	99.2	44.3	At4g38410	829998	dehydrin, putative	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
10.1	99.2	28.7	At1g74490	843790	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
10.0	99.2	275.7	At4g10480	826640	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPABV	O.I.	C.G.	H.G.
10.0	99.2	169.0	At3g58700	825039	60S ribosomal protein L11 (RPL11B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole;BOAMPF	O.I.	C.G.	H.G.
10.0	99.2	144.9	At5g03345	831867	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
10.0	99.2	116.6	At4g25890	828695	60S acidic ribosomal protein P3 (RPP3A)	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOB	O.I.	C.G.	H.G.
10.0	99.2	83.3	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.0	99.2	31.6	At2g19385	816457	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB	O.I.	C.G.	H.G.
9.9	99.1	100.1	At3g02190	820350	60S ribosomal protein L39 (RPL39B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
9.9	99.1	21.9	At3g23470	821928	cyclopropane-fatty-acyl-phospholipid synthase	F:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAM	O.I.	C.G.	H.G.
9.9	99.1	16.8	At2g46410	819249	CPC (CAPRICE)	Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.	O.I.	C.G.	H.G.
9.9	99.1	1.4	At1g56530	842106	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
9.8	99.1	70.1	At2g33730	817938	DEAD box RNA helicase, putative	F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:nucleus, cytoplasm;BMOFPAV	O.I.	C.G.	H.G.
9.8	99.1	44.7	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.

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GSM ID	GSM252671
Assay name	Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep1
GSE experiment	GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Microarray experiments to specifically-expressed genes

GSM ID GSM252671 Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep1 GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

GSM ID GSM252671

Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 5 hrs Taking 70 mm of Stump (4dpg) rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity