Microarray experiments to specifically-expressed genes

GSM ID GSM252669
Assay name Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (4dpg) rep3
GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
74.699.978.7At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
74.099.9135.6At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
43.499.8128.7At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
43.099.872.4At1g54890841928late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.699.8178.4At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.999.739.4At3g23470821928cyclopropane-fatty-acyl-phospholipid synthaseF:cyclopropane-fatty-acyl-phospholipid synthase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPAMO.I.C.G.H.G.
31.199.724.1At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
28.599.7103.2At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
28.499.722.5At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.399.727.0At5g23590832425DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
26.199.761.9At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.899.6306.3At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
24.199.6133.0At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
23.699.667.0At4g29520829073-F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;OMPFAO.I.C.G.H.G.
22.899.6110.2At3g17780821046unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
22.699.6125.7At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
22.099.6123.5At1g60810842375ACLA-2One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyaseO.I.C.G.H.G.
21.699.6105.5At1g04870839393PRMT10Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.C.G.H.G.
21.699.656.1At5g44710834500-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOO.I.C.G.H.G.
20.099.6256.5At5g59910836113HTB4F:DNA binding;P:nucleosome assembly;C:nucleolus;MOPFBO.I.C.G.H.G.
18.899.537.3At4g28830829004methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;BOAMPFO.I.C.G.H.G.
18.799.576.0At1g73940843731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.799.57.0At1g60790842373unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
18.599.599.9At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.199.5148.0At3g20000821538TOM40Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.O.I.C.G.H.G.
17.999.5368.2At3g12390820418nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:unknown;P:response to salt stress;C:cytosolic ribosome;MOFBPVAO.I.C.G.H.G.
17.999.521.6At5g14020831250-F:unknown;P:N-terminal protein myristoylation;C:vacuole;PO.I.C.G.H.G.
17.799.550.5At2g43780818981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
17.699.5106.5At2g18390816354TTN5 (TITAN 5)Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.O.I.C.G.H.G.
17.599.551.6At4g17190827430FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.O.I.C.G.H.G.
17.399.550.4At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
16.599.5174.8At5g18800831998NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family proteinF:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:unknown;MFPOO.I.C.G.H.G.
16.499.526.0At1g02430839242ATARFD1B (ADP-ribosylation factor D1B)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.O.I.C.G.H.G.
16.399.528.3At4g31930829323mitochondrial glycoprotein family protein / MAM33 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOO.I.C.G.H.G.
16.199.593.3At1g63980842701D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPVAO.I.C.G.H.G.
15.999.560.4At5g20400832162oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.O.I.C.G.H.G.
15.799.577.8At1g14620838024DECOY (DECOY)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBO.I.C.G.H.G.
15.799.533.1At3g03420821258Ku70-binding family proteinF:binding;P:unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
15.699.590.0At2g47640819377small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPAO.I.C.G.H.G.
15.599.576.1At2g25670817108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
15.599.526.3At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
15.599.520.5At3g49640824126FAD binding / catalytic/ tRNA dihydrouridine synthaseF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
15.199.4207.2At3g5870082503960S ribosomal protein L11 (RPL11B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole;BOAMPFO.I.C.G.H.G.
15.099.4201.4At2g35120818078glycine cleavage system H protein, mitochondrial, putativeF:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine catabolic process;C:mitochondrion, glycine cleavage complex;BOPMFAO.I.C.G.H.G.
14.999.4280.3At1g10590837601DNA-binding protein-relatedF:nucleic acid binding;P:biological_process unknown;C:plasma membrane;PAOO.I.C.G.H.G.
14.999.473.6At2g18400816355ribosomal protein L6 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMAO.I.C.G.H.G.
14.599.427.6At5g18070831926DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).O.I.C.G.H.G.
14.499.4192.7At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
14.499.451.9At2g07340815304prefoldin-related KE2 family proteinF:unfolded protein binding;P:protein folding;C:prefoldin complex;MFAPOO.I.C.G.H.G.
14.499.429.3At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
14.399.438.6At5g38110833791ASF1B (ANTI- SILENCING FUNCTION 1B)This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.O.I.C.G.H.G.
14.199.4103.7At5g46160834658ribosomal protein L14 family protein / huellenlos paralog (HLP)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAFO.I.C.G.H.G.
14.199.495.5At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
14.199.410.8At3g09360820092RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion bindingF:in 6 functions;P:translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex, nucleus;MOFBPAVO.I.C.G.H.G.
13.999.466.7At5g56500835751ATP binding / protein bindingF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAVO.I.C.G.H.G.
13.899.421.0At1g68150843143WRKY9member of WRKY Transcription Factor; Group II-bO.I.C.G.H.G.
13.799.4164.2At2g40360818629transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVAO.I.C.G.H.G.
13.799.4132.8At2g37120818288DNA-binding S1FA family proteinF:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;PO.I.C.G.H.G.
13.699.461.2At4g22930828392PYR4 (PYRIMIDIN 4)Encodes dihydroorotase (PYR4).O.I.C.G.H.G.
13.599.4167.3At2g3939081852460S ribosomal protein L35 (RPL35B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
13.599.471.0At4g33110829448coclaurine N-methyltransferase, putativeF:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMAO.I.C.G.H.G.
13.599.467.1At3g44320823557NIT3 (NITRILASE 3)This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.O.I.C.G.H.G.
13.599.464.9At5g16450831506dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
13.599.439.1At1g23750838985DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PAOO.I.C.G.H.G.
13.499.4129.3At3g54960824661ATPDIL1-3 (PDI-LIKE 1-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.O.I.C.G.H.G.
13.499.430.3At5g52280835304protein transport protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAVO.I.C.G.H.G.
13.299.4130.5At2g28020817346-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.299.451.2At5g27400832799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
13.099.455.6At1g31860840076AT-IEencodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.O.I.C.G.H.G.
12.999.356.1At1g57590842135carboxylesteraseF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
12.999.345.4At1g14330837994kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
12.899.3310.9At4g10480826640nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPABVO.I.C.G.H.G.
12.899.361.7At1g70980843436SYNC3F:in 6 functions;P:asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.C.G.H.G.
12.799.382.7At2g43640818966signal recognition particle 14 kDa family protein / SRP14 family proteinF:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPOO.I.C.G.H.G.
12.699.324.9At5g19340832054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBVO.I.C.G.H.G.
12.599.3220.9At1g24510839066T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:plasma membrane;BOMFPAO.I.C.G.H.G.
12.599.397.3At5g40650834065SDH2-2One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.O.I.C.G.H.G.
12.599.370.5At4g35850829739pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:unknown;C:mitochondrion;POMFBAO.I.C.G.H.G.
12.599.323.4At5g61880836309signaling molecule-relatedF:unknown;P:biological_process unknown;C:endomembrane system;MFPOO.I.C.G.H.G.
12.499.3206.9At2g47320819345peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:unknown;BOMFPAO.I.C.G.H.G.
12.499.329.7At2g47140819327short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
12.299.388.9At3g19910821529zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
12.299.358.3At3g26690822281ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.O.I.C.G.H.G.
12.199.3555.0At4g3920083007540S ribosomal protein S25 (RPS25E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOAO.I.C.G.H.G.
12.099.3273.2At2g21160816651translocon-associated protein alpha (TRAP alpha) family proteinF:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole;MPFOO.I.C.G.H.G.
12.099.3218.6At3g0668081985360S ribosomal protein L29 (RPL29B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOPFO.I.C.G.H.G.
11.999.378.9At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
11.999.376.6At5g1552083140540S ribosomal protein S19 (RPS19B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, membrane;MOAPFBO.I.C.G.H.G.
11.999.339.4At1g60770842371pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:mitochondrion;POMFBAO.I.C.G.H.G.
11.899.3275.9At1g66270842944BGLU21F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFAO.I.C.G.H.G.
11.899.343.2At5g39600833956unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
11.899.332.0At2g14460815934unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.699.341.8At4g00090828179transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:endomembrane system;MBFOPAO.I.C.G.H.G.
11.699.340.8At1g02330839367-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
11.599.337.5At1g18640838445--O.I.C.G.H.G.
11.499.341.6At5g45600834599GAS41The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.O.I.C.G.H.G.
11.499.312.8At2g17070816212unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
11.399.38.3At5g50330835099ATP binding / protein kinaseF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;OBMFPAVO.I.C.G.H.G.
11.299.291.9At5g56940835796ribosomal protein S16 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMFO.I.C.G.H.G.
11.199.2313.5At5g0245083190760S ribosomal protein L36 (RPL36C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFPO.I.C.G.H.G.



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