Microarray experiments to specifically-expressed genes

GSM ID GSM252665
Assay name Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep3
GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
93.899.939.3At1g31760840063SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFMVO.I.C.G.H.G.
78.999.9112.4At1g14330837994kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
72.299.977.5At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
72.299.919.3At3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
63.699.852.6At1g33750840266terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
57.099.8454.5At3g03920821062Gar1 RNA-binding region family proteinF:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVAO.I.C.G.H.G.
52.699.87.0At2g22710816801transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
48.799.830.1At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
40.899.892.4At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVO.I.C.G.H.G.
39.699.8547.7At4g10480826640nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPABVO.I.C.G.H.G.
38.999.841.7At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
38.599.8319.0At3g1678082093160S ribosomal protein L19 (RPL19B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFPO.I.C.G.H.G.
38.099.897.1At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
37.199.7211.6At3g20000821538TOM40Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.O.I.C.G.H.G.
34.699.790.8At1g31860840076AT-IEencodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.O.I.C.G.H.G.
33.699.7128.9At3g070303768790nucleic acid bindingF:nucleic acid binding;P:unknown;C:unknownO.I.C.G.H.G.
33.499.718.5At5g01080831873beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
33.099.740.9At5g14690831321unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVMO.I.C.G.H.G.
32.599.7257.6At4g15770827257RNA binding / protein bindingF:protein binding, RNA binding;P:ribosome assembly, ribosome biogenesis;C:nucleus;MFOPAO.I.C.G.H.G.
32.399.786.3At5g20400832162oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.O.I.C.G.H.G.
32.199.727.8At4g00200828162DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
30.299.744.7At3g12860820468nucleolar protein Nop56, putativeF:unknown;P:biological_process unknown;C:unknown;MOFPBAVO.I.C.G.H.G.
29.899.7169.4At1g12910837849ATAN11 (ANTHOCYANIN11)Encodes a protein with similarity to the petunia WD repeat protein an11.O.I.C.G.H.G.
29.799.729.4At5g57980835909RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)NRPB5-like protein of unknown function; homologous to budding yeast RPB5O.I.C.G.H.G.
29.399.735.9At5g61880836309signaling molecule-relatedF:unknown;P:biological_process unknown;C:endomembrane system;MFPOO.I.C.G.H.G.
28.899.7742.1At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
28.399.7157.4At5g16070831464chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
28.299.7165.3At1g52930841726brix domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
26.999.725.3At5g60730836194anion-transporting ATPase family proteinF:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFPO.I.C.G.H.G.
26.799.727.5At3g15240820755--O.I.C.G.H.G.
26.599.733.4At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
26.199.721.4At1g15480838118DNA bindingF:DNA binding;P:biological_process unknown;C:unknown;PMOFABO.I.C.G.H.G.
26.099.712.2At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
25.799.775.8At5g14440831295-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
25.799.759.4At3g12270820407PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPAO.I.C.G.H.G.
25.199.6308.0At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
25.199.671.4At1g79150844256bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
25.099.6289.0At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
25.099.6229.4At3g1061082023040S ribosomal protein S17 (RPS17C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MOAFPO.I.C.G.H.G.
24.899.6151.9At5g54900835581ATRBP45A (RNA-binding protein 45A)F:RNA binding;P:unknown;C:unknown;MPFOBAO.I.C.G.H.G.
24.799.62.1At1g56530842106hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
24.199.6783.5At4g3920083007540S ribosomal protein S25 (RPS25E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOAO.I.C.G.H.G.
23.899.69.0At5g40320834030DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.C.G.H.G.
22.699.628.6At4g29430829064rps15ae (ribosomal protein S15A E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, mitochondrion, cytosolic ribosome, vacuole;BOMAPFO.I.C.G.H.G.
22.499.666.5At5g27400832799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
21.999.613.4At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.O.I.C.G.H.G.
21.599.690.6At2g21060816641ATGRP2B (GLYCINE-RICH PROTEIN 2B)glycine-rich protein (AtGRP2b)O.I.C.G.H.G.
21.299.6183.6At1g02840839262SR1SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.O.I.C.G.H.G.
20.899.6166.7At1g52050841634jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
20.599.653.7At5g12080831081MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:plasma membrane, membrane;BOFAPO.I.C.G.H.G.
20.499.640.7At1g74490843790protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
20.399.637.8At3g26410822245methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:endomembrane system;MAFOPBO.I.C.G.H.G.
20.399.628.9At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.C.G.H.G.
20.299.623.5At1g03760839119prefoldin subunit family proteinF:unfolded protein binding;P:protein folding;C:prefoldin complex;MOPAFBVO.I.C.G.H.G.
20.099.6128.5At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.999.610.7At5g15725831428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.799.631.0At5g19300832050-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.C.G.H.G.
19.399.6538.4At5g52470835323FIB1 (FIBRILLARIN 1)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.O.I.C.G.H.G.
19.399.683.6At2g18400816355ribosomal protein L6 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMAO.I.C.G.H.G.
19.199.644.0At3g21110821663PUR7 (PURIN 7)5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.O.I.C.G.H.G.
19.099.5272.2At1g24510839066T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:plasma membrane;BOMFPAO.I.C.G.H.G.
19.099.516.0At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
18.899.517.5At3g62760825451ATGSTF13Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
18.499.528.9At2g14100815896CYP705A13a member of the cytochrome P450 familyO.I.C.G.H.G.
18.399.5501.1At1g4883084130540S ribosomal protein S7 (RPS7A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast;MPOFO.I.C.G.H.G.
18.299.581.7At1g72820843613mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
17.999.573.4At4g32910829427-F:unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
17.899.53.3At1g32000840091-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
17.699.5113.7At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
17.699.541.9At2g19385816457zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBO.I.C.G.H.G.
17.599.546.6At1g63470842653DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBOO.I.C.G.H.G.
17.499.540.2At2g28450817393zinc finger (CCCH-type) family proteinF:methyltransferase activity, zinc ion binding, RNA methyltransferase activity, nucleic acid binding;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing;C:cellular_component unknown;BOMFAPVO.I.C.G.H.G.
17.499.536.4At1g03110839572transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPAO.I.C.G.H.G.
17.299.529.6At3g03170821064unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.999.536.5At1g72730843605eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cytosol, plasma membrane, plant-type cell wall;BOMFPAVO.I.C.G.H.G.
16.899.524.6At1g14060837966-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFBVO.I.C.G.H.G.
16.699.587.3At2g40430818636-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
16.699.558.4At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.O.I.C.G.H.G.
16.499.5136.0At4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.O.I.C.G.H.G.
16.399.5443.0At1g48630841284RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B)Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.O.I.C.G.H.G.
16.399.525.0At1g69600843296ZFHD1 (ZINC FINGER HOMEODOMAIN 1)Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.O.I.C.G.H.G.
16.099.534.5At4g28830829004methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;BOAMPFO.I.C.G.H.G.
15.999.532.2At3g11520820325CYCB1Encodes a B-type mitotic cyclin.O.I.C.G.H.G.
15.899.530.2At3g43240823399ARID/BRIGHT DNA-binding domain-containing proteinF:protein binding, DNA binding, zinc ion binding;P:unknown;C:intracellular;PMFOO.I.C.G.H.G.
15.799.525.8At1g62150842511mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:unknown;C:unknown;POMO.I.C.G.H.G.
15.699.548.8At5g45600834599GAS41The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.O.I.C.G.H.G.
15.499.547.9At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
15.399.485.4At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
15.299.446.8At2g43780818981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
14.999.421.6At3g02320820451RNA binding / tRNA (guanine-N2-)-methyltransferaseF:RNA binding, tRNA (guanine-N2-)-methyltransferase activity;P:tRNA processing;C:cellular_component unknown;OMAFBPO.I.C.G.H.G.
14.799.4160.6At1g52070841636jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
14.799.421.3At1g80370844377CYCA2F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVBO.I.C.G.H.G.
14.699.4168.6At1g49760841399PAB8 (POLY(A) BINDING PROTEIN 8)polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.O.I.C.G.H.G.
14.599.4154.5At5g35620833534LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.O.I.C.G.H.G.
14.599.434.2At4g10620826654-F:unknown;P:biological_process unknown;C:chloroplast;BMFOPAO.I.C.G.H.G.
14.499.4332.3At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
14.499.481.8At4g34265829576unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
14.199.4134.6At2g28020817346-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.199.410.3At1g72840843615ATP binding / protein binding / transmembrane receptorF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
14.099.445.7At5g57120835816-F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVAO.I.C.G.H.G.



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