CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM252663

Assay name Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
59.9 99.8 93.9 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
49.3 99.8 110.7 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM O.I. C.G. H.G.
47.6 99.8 198.0 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.4 99.8 36.5 At1g64490 842757 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
42.1 99.8 399.3 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
41.6 99.8 73.2 At1g69526 843287 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:unknown;C:chloroplast;PBO O.I. C.G. H.G.
38.4 99.8 56.5 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
36.8 99.7 28.6 At5g42060 834211 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.9 99.7 90.7 At2g45950 819203 ASK20 (ARABIDOPSIS SKP1-LIKE 20) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFBV O.I. C.G. H.G.
32.4 99.7 909.6 At4g39200 830075 40S ribosomal protein S25 (RPS25E) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA O.I. C.G. H.G.
32.3 99.7 328.3 At3g57150 824882 NAP57 (Arabidopsis thaliana homologue of NAP57) Encodes a putative pseudouridine synthase (NAP57). O.I. C.G. H.G.
31.0 99.7 40.3 At2g18220 816337 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
27.6 99.7 12.6 At5g15725 831428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.9 99.7 2.2 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
25.8 99.7 412.0 At2g25210 817059 60S ribosomal protein L39 (RPL39A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP O.I. C.G. H.G.
25.1 99.6 141.8 At3g06320 819806 ribosomal protein L33 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF O.I. C.G. H.G.
24.9 99.6 75.7 At5g20400 832162 oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. O.I. C.G. H.G.
24.8 99.6 26.6 At2g46410 819249 CPC (CAPRICE) Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. O.I. C.G. H.G.
22.6 99.6 262.2 At3g10090 820170 40S ribosomal protein S28 (RPS28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF O.I. C.G. H.G.
22.4 99.6 55.7 At3g55170 824683 60S ribosomal protein L35 (RPL35C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
22.3 99.6 29.2 At1g69600 843296 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid. O.I. C.G. H.G.
21.8 99.6 106.7 At1g07070 837218 60S ribosomal protein L35a (RPL35aA) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
21.2 99.6 24.9 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
20.2 99.6 64.1 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
19.5 99.6 66.1 At5g14440 831295 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
19.1 99.6 71.7 At1g02810 838078 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
18.5 99.5 111.2 At5g43580 834378 serine-type endopeptidase inhibitor Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
18.4 99.5 15.0 At1g72850 843616 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMFO O.I. C.G. H.G.
18.0 99.5 60.3 At2g45860 819194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.3 99.5 185.1 At2g40360 818629 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA O.I. C.G. H.G.
17.2 99.5 538.4 At2g40205 818612 60S ribosomal protein L41 (RPL41C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFO O.I. C.G. H.G.
17.0 99.5 186.5 At1g61570 842453 TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13) Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space. O.I. C.G. H.G.
16.8 99.5 27.4 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
16.3 99.5 142.4 At5g43970 834420 TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V) Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion. O.I. C.G. H.G.
15.3 99.4 76.4 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
15.3 99.4 38.6 At5g16750 831538 TOZ (TORMOZEMBRYO DEFECTIVE) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. O.I. C.G. H.G.
14.6 99.4 25.4 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
14.5 99.4 46.2 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
14.5 99.4 25.6 At2g14100 815896 CYP705A13 a member of the cytochrome P450 family O.I. C.G. H.G.
14.4 99.4 524.5 At3g16080 820853 60S ribosomal protein L37 (RPL37C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
14.4 99.4 507.8 At3g09500 820107 60S ribosomal protein L35 (RPL35A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFP O.I. C.G. H.G.
14.0 99.4 351.4 At5g02450 831907 60S ribosomal protein L36 (RPL36C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFP O.I. C.G. H.G.
14.0 99.4 20.1 At5g49560 835018 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
13.9 99.4 284.3 At5g67510 836887 60S ribosomal protein L26 (RPL26B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPB O.I. C.G. H.G.
13.6 99.4 597.7 At5g27850 832848 60S ribosomal protein L18 (RPL18C) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane;MOFPA O.I. C.G. H.G.
13.5 99.4 153.7 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
13.3 99.4 83.9 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P O.I. C.G. H.G.
13.0 99.4 326.8 At3g06700 819855 60S ribosomal protein L29 (RPL29A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF O.I. C.G. H.G.
12.9 99.3 176.4 At1g74270 843767 60S ribosomal protein L35a (RPL35aC) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA O.I. C.G. H.G.
12.9 99.3 93.1 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
12.7 99.3 70.2 At1g16000 838170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.4 99.3 39.5 At1g09280 837449 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBFMP O.I. C.G. H.G.
12.3 99.3 117.6 At4g00585 828026 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMO O.I. C.G. H.G.
12.1 99.3 501.6 At4g29390 829060 40S ribosomal protein S30 (RPS30B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV O.I. C.G. H.G.
12.1 99.3 73.3 At5g16060 831463 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
12.1 99.3 14.8 At4g33800 829522 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.1 99.3 8.1 At1g64930 842801 CYP89A7 member of CYP89A O.I. C.G. H.G.
12.0 99.3 31.2 At1g74490 843790 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
11.9 99.3 162.1 At1g30880 839972 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
11.9 99.3 9.3 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
11.8 99.3 57.5 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
11.8 99.3 39.6 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
11.7 99.3 65.6 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
11.6 99.3 205.0 At3g03920 821062 Gar1 RNA-binding region family protein F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA O.I. C.G. H.G.
11.6 99.3 82.3 At3g05060 819668 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein O.I. C.G. H.G.
11.5 99.3 538.9 At1g77940 844129 60S ribosomal protein L30 (RPL30B) F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPB O.I. C.G. H.G.
11.5 99.3 8.8 At4g00530 827975 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
11.4 99.3 120.9 At2g28020 817346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.3 99.3 653.5 At2g19730 816492 60S ribosomal protein L28 (RPL28A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO O.I. C.G. H.G.
11.3 99.3 464.9 At3g23390 821920 60S ribosomal protein L36a/L44 (RPL36aA) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFAPB O.I. C.G. H.G.
11.2 99.2 491.1 At2g37190 818295 60S ribosomal protein L12 (RPL12A) F:structural constituent of ribosome;P:response to cold, ribosome biogenesis;C:in 7 components;MBAOFP O.I. C.G. H.G.
11.2 99.2 162.0 At5g02610 831853 60S ribosomal protein L35 (RPL35D) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFP O.I. C.G. H.G.
11.1 99.2 627.8 At1g04270 839564 RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15) Encodes cytosolic ribosomal protein S15. O.I. C.G. H.G.
11.1 99.2 40.8 At5g57120 835816 - F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVA O.I. C.G. H.G.
10.9 99.2 105.1 At3g02190 820350 60S ribosomal protein L39 (RPL39B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
10.9 99.2 31.2 At1g17560 838332 HLL (HUELLENLOS) Mutant shows abnormal ovule development O.I. C.G. H.G.
10.7 99.2 309.9 At4g31985 829329 60S ribosomal protein L39 (RPL39C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP O.I. C.G. H.G.
10.7 99.2 86.7 At2g42740 818874 RPL16A encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. O.I. C.G. H.G.
10.7 99.2 45.3 At5g06210 830508 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA O.I. C.G. H.G.
10.6 99.2 179.3 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.6 99.2 22.6 At3g13175 820507 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.6 99.2 9.6 At2g20480 816568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.5 99.2 422.5 At5g56670 835768 40S ribosomal protein S30 (RPS30C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV O.I. C.G. H.G.
10.5 99.2 11.1 At1g49700 841393 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.4 99.2 472.9 At2g27720 817318 60S acidic ribosomal protein P2 (RPP2A) F:structural constituent of ribosome;P:translational elongation, response to cold;C:cytosol, cytosolic ribosome, ribosome, nucleus, membrane;MFPOA O.I. C.G. H.G.
10.4 99.2 282.0 At5g64140 836535 RPS28 (RIBOSOMAL PROTEIN S28) Encodes a putative ribosomal protein S28. O.I. C.G. H.G.
10.4 99.2 95.4 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.3 99.2 114.1 At1g16740 838245 ribosomal protein L20 family protein F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM O.I. C.G. H.G.
10.3 99.2 46.8 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.2 99.2 117.0 At1g52050 841634 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
10.0 99.2 121.8 At3g47836 823939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.9 99.1 73.0 At2g35605 818127 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV O.I. C.G. H.G.
9.9 99.1 17.4 At5g05450 830428 DEAD/DEAH box helicase, putative (RH18) F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
9.8 99.1 346.5 At3g48930 824054 EMB1080 (embryo defective 1080) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFP O.I. C.G. H.G.
9.8 99.1 16.1 At4g11080 826709 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
9.7 99.1 350.4 At5g23740 832439 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) Encodes a putative ribosomal protein S11 (RPS11-beta). O.I. C.G. H.G.
9.7 99.1 78.3 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
9.6 99.1 141.3 At2g39390 818524 60S ribosomal protein L35 (RPL35B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
9.6 99.1 23.9 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO O.I. C.G. H.G.
9.6 99.1 19.9 At5g14750 831327 ATMYB66 (MYB DOMAIN PROTEIN 66) Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC). O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
59.9	99.8	93.9	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
49.3	99.8	110.7	At5g35940	833584	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
47.6	99.8	198.0	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.4	99.8	36.5	At1g64490	842757	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
42.1	99.8	399.3	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
41.6	99.8	73.2	At1g69526	843287	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
38.4	99.8	56.5	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
36.8	99.7	28.6	At5g42060	834211	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.9	99.7	90.7	At2g45950	819203	ASK20 (ARABIDOPSIS SKP1-LIKE 20)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFBV	O.I.	C.G.	H.G.
32.4	99.7	909.6	At4g39200	830075	40S ribosomal protein S25 (RPS25E)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA	O.I.	C.G.	H.G.
32.3	99.7	328.3	At3g57150	824882	NAP57 (Arabidopsis thaliana homologue of NAP57)	Encodes a putative pseudouridine synthase (NAP57).	O.I.	C.G.	H.G.
31.0	99.7	40.3	At2g18220	816337	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
27.6	99.7	12.6	At5g15725	831428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.9	99.7	2.2	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
25.8	99.7	412.0	At2g25210	817059	60S ribosomal protein L39 (RPL39A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	O.I.	C.G.	H.G.
25.1	99.6	141.8	At3g06320	819806	ribosomal protein L33 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	C.G.	H.G.
24.9	99.6	75.7	At5g20400	832162	oxidoreductase, 2OG-Fe(II) oxygenase family protein	encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.	O.I.	C.G.	H.G.
24.8	99.6	26.6	At2g46410	819249	CPC (CAPRICE)	Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.	O.I.	C.G.	H.G.
22.6	99.6	262.2	At3g10090	820170	40S ribosomal protein S28 (RPS28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPF	O.I.	C.G.	H.G.
22.4	99.6	55.7	At3g55170	824683	60S ribosomal protein L35 (RPL35C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
22.3	99.6	29.2	At1g69600	843296	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.	O.I.	C.G.	H.G.
21.8	99.6	106.7	At1g07070	837218	60S ribosomal protein L35a (RPL35aA)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
21.2	99.6	24.9	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
20.2	99.6	64.1	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
19.5	99.6	66.1	At5g14440	831295	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
19.1	99.6	71.7	At1g02810	838078	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
18.5	99.5	111.2	At5g43580	834378	serine-type endopeptidase inhibitor	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
18.4	99.5	15.0	At1g72850	843616	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMFO	O.I.	C.G.	H.G.
18.0	99.5	60.3	At2g45860	819194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.3	99.5	185.1	At2g40360	818629	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVA	O.I.	C.G.	H.G.
17.2	99.5	538.4	At2g40205	818612	60S ribosomal protein L41 (RPL41C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFO	O.I.	C.G.	H.G.
17.0	99.5	186.5	At1g61570	842453	TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)	Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.	O.I.	C.G.	H.G.
16.8	99.5	27.4	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
16.3	99.5	142.4	At5g43970	834420	TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)	Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.	O.I.	C.G.	H.G.
15.3	99.4	76.4	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
15.3	99.4	38.6	At5g16750	831538	TOZ (TORMOZEMBRYO DEFECTIVE)	Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.	O.I.	C.G.	H.G.
14.6	99.4	25.4	At5g51500	835224	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
14.5	99.4	46.2	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
14.5	99.4	25.6	At2g14100	815896	CYP705A13	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
14.4	99.4	524.5	At3g16080	820853	60S ribosomal protein L37 (RPL37C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
14.4	99.4	507.8	At3g09500	820107	60S ribosomal protein L35 (RPL35A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOBAFP	O.I.	C.G.	H.G.
14.0	99.4	351.4	At5g02450	831907	60S ribosomal protein L36 (RPL36C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFP	O.I.	C.G.	H.G.
14.0	99.4	20.1	At5g49560	835018	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
13.9	99.4	284.3	At5g67510	836887	60S ribosomal protein L26 (RPL26B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit;MAOFPB	O.I.	C.G.	H.G.
13.6	99.4	597.7	At5g27850	832848	60S ribosomal protein L18 (RPL18C)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane;MOFPA	O.I.	C.G.	H.G.
13.5	99.4	153.7	At1g52070	841636	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
13.3	99.4	83.9	At5g10130	830877	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P	O.I.	C.G.	H.G.
13.0	99.4	326.8	At3g06700	819855	60S ribosomal protein L29 (RPL29A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF	O.I.	C.G.	H.G.
12.9	99.3	176.4	At1g74270	843767	60S ribosomal protein L35a (RPL35aC)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPA	O.I.	C.G.	H.G.
12.9	99.3	93.1	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
12.7	99.3	70.2	At1g16000	838170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.4	99.3	39.5	At1g09280	837449	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBFMP	O.I.	C.G.	H.G.
12.3	99.3	117.6	At4g00585	828026	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFMO	O.I.	C.G.	H.G.
12.1	99.3	501.6	At4g29390	829060	40S ribosomal protein S30 (RPS30B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV	O.I.	C.G.	H.G.
12.1	99.3	73.3	At5g16060	831463	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
12.1	99.3	14.8	At4g33800	829522	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.1	99.3	8.1	At1g64930	842801	CYP89A7	member of CYP89A	O.I.	C.G.	H.G.
12.0	99.3	31.2	At1g74490	843790	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
11.9	99.3	162.1	At1g30880	839972	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
11.9	99.3	9.3	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
11.8	99.3	57.5	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
11.8	99.3	39.6	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
11.7	99.3	65.6	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
11.6	99.3	205.0	At3g03920	821062	Gar1 RNA-binding region family protein	F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA	O.I.	C.G.	H.G.
11.6	99.3	82.3	At3g05060	819668	SAR DNA-binding protein, putative	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein	O.I.	C.G.	H.G.
11.5	99.3	538.9	At1g77940	844129	60S ribosomal protein L30 (RPL30B)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPB	O.I.	C.G.	H.G.
11.5	99.3	8.8	At4g00530	827975	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
11.4	99.3	120.9	At2g28020	817346	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.3	99.3	653.5	At2g19730	816492	60S ribosomal protein L28 (RPL28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO	O.I.	C.G.	H.G.
11.3	99.3	464.9	At3g23390	821920	60S ribosomal protein L36a/L44 (RPL36aA)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFAPB	O.I.	C.G.	H.G.
11.2	99.2	491.1	At2g37190	818295	60S ribosomal protein L12 (RPL12A)	F:structural constituent of ribosome;P:response to cold, ribosome biogenesis;C:in 7 components;MBAOFP	O.I.	C.G.	H.G.
11.2	99.2	162.0	At5g02610	831853	60S ribosomal protein L35 (RPL35D)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFP	O.I.	C.G.	H.G.
11.1	99.2	627.8	At1g04270	839564	RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15)	Encodes cytosolic ribosomal protein S15.	O.I.	C.G.	H.G.
11.1	99.2	40.8	At5g57120	835816	-	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.
10.9	99.2	105.1	At3g02190	820350	60S ribosomal protein L39 (RPL39B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
10.9	99.2	31.2	At1g17560	838332	HLL (HUELLENLOS)	Mutant shows abnormal ovule development	O.I.	C.G.	H.G.
10.7	99.2	309.9	At4g31985	829329	60S ribosomal protein L39 (RPL39C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOP	O.I.	C.G.	H.G.
10.7	99.2	86.7	At2g42740	818874	RPL16A	encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.	O.I.	C.G.	H.G.
10.7	99.2	45.3	At5g06210	830508	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA	O.I.	C.G.	H.G.
10.6	99.2	179.3	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.6	99.2	22.6	At3g13175	820507	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.6	99.2	9.6	At2g20480	816568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.5	99.2	422.5	At5g56670	835768	40S ribosomal protein S30 (RPS30C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAV	O.I.	C.G.	H.G.
10.5	99.2	11.1	At1g49700	841393	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.4	99.2	472.9	At2g27720	817318	60S acidic ribosomal protein P2 (RPP2A)	F:structural constituent of ribosome;P:translational elongation, response to cold;C:cytosol, cytosolic ribosome, ribosome, nucleus, membrane;MFPOA	O.I.	C.G.	H.G.
10.4	99.2	282.0	At5g64140	836535	RPS28 (RIBOSOMAL PROTEIN S28)	Encodes a putative ribosomal protein S28.	O.I.	C.G.	H.G.
10.4	99.2	95.4	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.3	99.2	114.1	At1g16740	838245	ribosomal protein L20 family protein	F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM	O.I.	C.G.	H.G.
10.3	99.2	46.8	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.2	99.2	117.0	At1g52050	841634	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
10.0	99.2	121.8	At3g47836	823939	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.9	99.1	73.0	At2g35605	818127	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV	O.I.	C.G.	H.G.
9.9	99.1	17.4	At5g05450	830428	DEAD/DEAH box helicase, putative (RH18)	F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
9.8	99.1	346.5	At3g48930	824054	EMB1080 (embryo defective 1080)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane;MOBAFP	O.I.	C.G.	H.G.
9.8	99.1	16.1	At4g11080	826709	high mobility group (HMG1/2) family protein	F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
9.7	99.1	350.4	At5g23740	832439	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	Encodes a putative ribosomal protein S11 (RPS11-beta).	O.I.	C.G.	H.G.
9.7	99.1	78.3	At1g22880	838893	CEL5 (CELLULASE 5)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
9.6	99.1	141.3	At2g39390	818524	60S ribosomal protein L35 (RPL35B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
9.6	99.1	23.9	At1g31950	840085	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO	O.I.	C.G.	H.G.
9.6	99.1	19.9	At5g14750	831327	ATMYB66 (MYB DOMAIN PROTEIN 66)	Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).	O.I.	C.G.	H.G.

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GSM ID	GSM252663
Assay name	Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep1
GSE experiment	GSE9996: Organ regeneration in plants is independent of stem cell niche activity

Microarray experiments to specifically-expressed genes

GSM ID GSM252663 Assay name Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep1 GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity

GSM ID GSM252663

Assay name Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep1

GSE experiment GSE9996: Organ regeneration in plants is independent of stem cell niche activity