Microarray experiments to specifically-expressed genes

GSM ID GSM245484
Assay name 9 hr Hypoxia Stress IP RNA Rep 2
GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
374.1100.0102.6At1g63530842658-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVO.I.C.G.H.G.
238.5100.0188.2At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
188.8100.0155.3At1g69680843304-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
181.4100.063.0At2g20500816571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
166.7100.0411.1At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PO.I.C.G.H.G.
148.399.9194.9At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFO.I.C.G.H.G.
147.899.977.3At1g59660842256nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.C.G.H.G.
140.899.9307.1At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
100.499.9310.6At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVO.I.C.G.H.G.
86.299.998.0At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
85.899.9108.4At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
82.699.9270.9At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
79.599.944.9At5g26200832689mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
78.999.9153.0At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
78.899.9195.6At1g10140837551-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POO.I.C.G.H.G.
68.999.9399.8At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
68.599.9547.0At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.O.I.C.G.H.G.
62.399.8162.0At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
57.499.8282.1At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
56.199.8200.3At1g76650843998calcium-binding EF hand family proteinF:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOBO.I.C.G.H.G.
54.199.8128.5At3g29970822700germination protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
52.599.8311.4At5g12030831076AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.O.I.C.G.H.G.
47.899.8147.2At1g30260839906-F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;PO.I.C.G.H.G.
44.599.864.2At1g31340840023RUB1 (RELATED TO UBIQUITIN 1)Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.O.I.C.G.H.G.
41.599.870.3At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.C.G.H.G.
40.999.858.9At4g32690829404GLB3Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.O.I.C.G.H.G.
40.299.8125.4At1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
38.499.8490.6At3g05730819742-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
34.499.727.7At5g02200830832FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.O.I.C.G.H.G.
33.299.759.7At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
30.799.7253.7At3g03270821303universal stress protein (USP) family protein / early nodulin ENOD18 family proteinF:unknown;P:response to stress;C:plasma membrane, membrane;PFMBOO.I.C.G.H.G.
30.599.7287.0At3g26510822258octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBVO.I.C.G.H.G.
30.299.7214.0At5g11090830977serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
29.299.7231.5At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.999.7193.5At1g72430843575auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
28.999.752.1At1g72800843611nuM1-relatedF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAVO.I.C.G.H.G.
28.499.7164.7At2g31200817676ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)Encodes actin depolymerizing factor 6 (ADF6).O.I.C.G.H.G.
26.699.7210.8At2g36950818269heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
26.099.7368.0At4g35750829728Rho-GTPase-activating protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
25.799.7592.5At5g58070835919TIL (TEMPERATURE-INDUCED LIPOCALIN)Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.O.I.C.G.H.G.
25.299.6515.1At1g09070837428SRC2 (SOYBEAN GENE REGULATED BY COLD-2)SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.O.I.C.G.H.G.
24.899.6238.5At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
24.699.6396.7At3g11930820366universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
24.299.6115.1At1g68670843197myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
23.499.6126.2At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
23.499.641.0At5g42200834225zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
23.399.696.6At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
23.099.6580.2At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
22.499.666.3At2g36790818251UGT73C6 (UDP-glucosyl transferase 73C6)The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives.O.I.C.G.H.G.
22.399.6121.0At3g50440824208MES10 (METHYL ESTERASE 10)Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
22.399.689.5At5g13240831164transcription regulatorF:transcription regulator activity;P:negative regulation of transcription from RNA polymerase III promoter;C:nucleus;MFOPO.I.C.G.H.G.
21.599.6200.7At2g41730818772unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
21.499.6598.0At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
21.099.689.9At3g23170821893unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
19.699.698.9At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
19.499.663.8At5g01740831686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
19.399.6358.9At4g27450828854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMFO.I.C.G.H.G.
18.899.5185.9At5g54960835587PDC2 (pyruvate decarboxylase-2)pyruvate decarboxylase-2O.I.C.G.H.G.
17.799.568.7At1g74940843833senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.199.5161.1At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAO.I.C.G.H.G.
16.599.5206.3At5g25280832600serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
16.499.5264.8At4g23680828468major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
16.199.5113.4At5g56600835761PRF3 (PROFILIN 3)Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.O.I.C.G.H.G.
16.099.537.2At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.C.G.H.G.
15.299.422.0At4g21510828236F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.699.446.6At1g47960841214C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.O.I.C.G.H.G.
14.099.4248.9At4g19880827734-F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMAO.I.C.G.H.G.
13.799.4508.2At5g54940835585eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOABVO.I.C.G.H.G.
13.199.4247.9At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFO.I.C.G.H.G.
13.199.446.9At1g05560837058UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1)A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.O.I.C.G.H.G.
13.099.4180.8At3g46230823768ATHSP17.4member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seedsO.I.C.G.H.G.
12.899.3121.2At4g10040826595CYTC-2 (cytochrome c-2)Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers.O.I.C.G.H.G.
12.799.351.7At3g52720824438ACA1 (ALPHA CARBONIC ANHYDRASE 1)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.C.G.H.G.
12.599.3162.2At3g04730819633IAA16early auxin-induced (IAA16)O.I.C.G.H.G.
12.399.3223.5At3g58680825037MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.O.I.C.G.H.G.
12.299.3195.9At1g12780837834UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.O.I.C.G.H.G.
12.099.3232.0At5g20010832123RAN-1A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.O.I.C.G.H.G.
11.999.391.8At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
11.699.3443.3At1g25275839111unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.699.359.2At2g46550819267unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
11.599.390.7At3g19240821458-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPMO.I.C.G.H.G.
11.499.3176.0At2g20670816595unknown proteinF:unknown;P:unknown;C:chloroplast;POO.I.C.G.H.G.
11.299.241.3At4g27030828811small conjugating protein ligaseF:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBVO.I.C.G.H.G.
11.199.2354.0At3g47070823860unknown proteinF:unknown;P:unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PO.I.C.G.H.G.
11.099.2140.4At1g70890843427MLP43 (MLP-LIKE PROTEIN 43)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;PO.I.C.G.H.G.
10.899.2105.9At1g63800842683UBC5 (ubiquitin-conjugating enzyme 5)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.C.G.H.G.
10.799.230.7At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAO.I.C.G.H.G.
10.699.2220.2At2g42680818868MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.O.I.C.G.H.G.
10.599.270.4At1g03610838961unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.499.2233.4At3g03150821070unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
10.499.2172.7At3g10020820163unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PMO.I.C.G.H.G.
10.499.2125.1At3g13310820531DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAVO.I.C.G.H.G.
10.499.228.3At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAO.I.C.G.H.G.
10.499.221.0At4g16000827284unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.399.289.2At1g72680843600cinnamyl-alcohol dehydrogenase, putativeF:in 6 functions;P:lignin biosynthetic process;C:unknown;BOPFMAVO.I.C.G.H.G.
10.399.248.8At5g17650831631glycine/proline-rich proteinF:unknown;P:unknown;C:unknown;MFPBOVAO.I.C.G.H.G.
9.999.160.6At1g16840838255unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.1286.6At1g80920844432J8J8 mRNA, nuclear gene encoding plastid protein, completeO.I.C.G.H.G.
9.799.1226.4At5g67600836896unknown proteinF:unknown;P:unknown;C:plasma membrane;MOPFBVO.I.C.G.H.G.
9.699.152.5At2g44360819043unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.



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