CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM245477

Assay name 2 hr Hypoxia Stress Total RNA Rep 2

GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
138.5 99.9 59.3 At5g26200 832689 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
119.7 99.9 119.3 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA O.I. C.G. H.G.
94.4 99.9 309.3 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P O.I. C.G. H.G.
79.8 99.9 83.8 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA O.I. C.G. H.G.
79.4 99.9 78.3 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA O.I. C.G. H.G.
71.0 99.9 313.7 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
60.6 99.8 201.5 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
60.1 99.8 159.0 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
55.3 99.8 119.0 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF O.I. C.G. H.G.
50.8 99.8 86.8 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.3 99.8 82.1 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
45.3 99.8 175.7 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
41.9 99.8 54.8 At5g42200 834225 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
37.9 99.8 296.6 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
34.8 99.7 175.8 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.6 99.6 67.1 At5g44730 834502 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFP O.I. C.G. H.G.
21.9 99.6 125.2 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
19.4 99.6 72.5 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
18.6 99.5 62.4 At5g01740 831686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
18.5 99.5 93.7 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
17.3 99.5 40.1 At1g31340 840023 RUB1 (RELATED TO UBIQUITIN 1) Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. O.I. C.G. H.G.
17.2 99.5 67.8 At1g74940 843833 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.6 99.5 79.9 At3g23170 821893 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.6 99.5 42.2 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
14.7 99.4 137.9 At1g72430 843575 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
14.6 99.4 32.0 At4g32840 829420 PFK6 (PHOSPHOFRUCTOKINASE 6) F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV O.I. C.G. H.G.
13.5 99.4 242.7 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
13.4 99.4 31.5 At5g51460 835220 ATTPPA homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases O.I. C.G. H.G.
13.4 99.4 23.5 At3g12150 820392 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MBPO O.I. C.G. H.G.
12.3 99.3 57.3 At1g63090 842612 AtPP2-A11 (Phloem protein 2-A11) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
11.9 99.3 88.3 At3g50440 824208 MES10 (METHYL ESTERASE 10) Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
11.5 99.3 57.1 At5g62520 836372 SRO5 (SIMILAR TO RCD ONE 5) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response. O.I. C.G. H.G.
10.1 99.2 35.2 At5g61440 836265 ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5) Encodes a member of the thioredoxin family protein. Located in the chloroplast. O.I. C.G. H.G.
10.0 99.2 490.2 At3g05590 819725 RPL18 (RIBOSOMAL PROTEIN L18) Encodes cytoplasmic ribosomal protein L18. O.I. C.G. H.G.
9.9 99.1 122.7 At5g11090 830977 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
9.9 99.1 86.1 At2g21210 816658 auxin-responsive protein, putative Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers. O.I. C.G. H.G.
9.8 99.1 46.5 At2g44770 819086 phagocytosis and cell motility protein ELMO1-related F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF O.I. C.G. H.G.
9.7 99.1 120.9 At3g13310 820531 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV O.I. C.G. H.G.
9.6 99.1 316.9 At1g77760 844112 NIA1 (NITRATE REDUCTASE 1) Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin. O.I. C.G. H.G.
9.5 99.1 211.2 At5g19120 832032 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF O.I. C.G. H.G.
9.2 99.1 247.7 At4g27450 828854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF O.I. C.G. H.G.
8.8 99.0 166.7 At3g27770 822398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
8.8 99.0 50.3 At2g44360 819043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
8.7 99.0 25.9 At4g22780 828377 ACR7 Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding . O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
138.5	99.9	59.3	At5g26200	832689	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
119.7	99.9	119.3	At2g29870	817537	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:membrane;BPMOFA	O.I.	C.G.	H.G.
94.4	99.9	309.3	At4g10270	826619	wound-responsive family protein	F:molecular_function unknown;P:response to wounding;C:unknown;P	O.I.	C.G.	H.G.
79.8	99.9	83.8	At3g10040	820165	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA	O.I.	C.G.	H.G.
79.4	99.9	78.3	At3g27220	822341	kelch repeat-containing protein	F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA	O.I.	C.G.	H.G.
71.0	99.9	313.7	At3g02550	821112	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
60.6	99.8	201.5	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
60.1	99.8	159.0	At5g39890	833986	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
55.3	99.8	119.0	At2g17850	816295	-	F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF	O.I.	C.G.	H.G.
50.8	99.8	86.8	At5g10040	830868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.3	99.8	82.1	At4g33560	829495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
45.3	99.8	175.7	At5g15120	831364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
41.9	99.8	54.8	At5g42200	834225	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
37.9	99.8	296.6	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
34.8	99.7	175.8	At1g33055	840201	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.6	99.6	67.1	At5g44730	834502	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFP	O.I.	C.G.	H.G.
21.9	99.6	125.2	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
19.4	99.6	72.5	At1g55810	842031	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
18.6	99.5	62.4	At5g01740	831686	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
18.5	99.5	93.7	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
17.3	99.5	40.1	At1g31340	840023	RUB1 (RELATED TO UBIQUITIN 1)	Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.	O.I.	C.G.	H.G.
17.2	99.5	67.8	At1g74940	843833	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.6	99.5	79.9	At3g23170	821893	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.6	99.5	42.2	At4g24110	828511	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
14.7	99.4	137.9	At1g72430	843575	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
14.6	99.4	32.0	At4g32840	829420	PFK6 (PHOSPHOFRUCTOKINASE 6)	F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV	O.I.	C.G.	H.G.
13.5	99.4	242.7	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
13.4	99.4	31.5	At5g51460	835220	ATTPPA	homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases	O.I.	C.G.	H.G.
13.4	99.4	23.5	At3g12150	820392	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MBPO	O.I.	C.G.	H.G.
12.3	99.3	57.3	At1g63090	842612	AtPP2-A11 (Phloem protein 2-A11)	F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.9	99.3	88.3	At3g50440	824208	MES10 (METHYL ESTERASE 10)	Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
11.5	99.3	57.1	At5g62520	836372	SRO5 (SIMILAR TO RCD ONE 5)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.	O.I.	C.G.	H.G.
10.1	99.2	35.2	At5g61440	836265	ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)	Encodes a member of the thioredoxin family protein. Located in the chloroplast.	O.I.	C.G.	H.G.
10.0	99.2	490.2	At3g05590	819725	RPL18 (RIBOSOMAL PROTEIN L18)	Encodes cytoplasmic ribosomal protein L18.	O.I.	C.G.	H.G.
9.9	99.1	122.7	At5g11090	830977	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
9.9	99.1	86.1	At2g21210	816658	auxin-responsive protein, putative	Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers.	O.I.	C.G.	H.G.
9.8	99.1	46.5	At2g44770	819086	phagocytosis and cell motility protein ELMO1-related	F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF	O.I.	C.G.	H.G.
9.7	99.1	120.9	At3g13310	820531	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
9.6	99.1	316.9	At1g77760	844112	NIA1 (NITRATE REDUCTASE 1)	Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin.	O.I.	C.G.	H.G.
9.5	99.1	211.2	At5g19120	832032	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF	O.I.	C.G.	H.G.
9.2	99.1	247.7	At4g27450	828854	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF	O.I.	C.G.	H.G.
8.8	99.0	166.7	At3g27770	822398	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
8.8	99.0	50.3	At2g44360	819043	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
8.7	99.0	25.9	At4g22780	828377	ACR7	Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding .	O.I.	C.G.	H.G.

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GSM ID	GSM245477
Assay name	2 hr Hypoxia Stress Total RNA Rep 2
GSE experiment	GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Microarray experiments to specifically-expressed genes

GSM ID GSM245477 Assay name 2 hr Hypoxia Stress Total RNA Rep 2 GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

GSM ID GSM245477

Assay name 2 hr Hypoxia Stress Total RNA Rep 2

GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation