Microarray experiments to specifically-expressed genes

GSM ID GSM245475
Assay name 9 hr Hypoxia Stress 1 hr recovery IP RNA Rep 1
GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
63.899.890.3At1g69680843304-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
62.299.8361.2At3g03270821303universal stress protein (USP) family protein / early nodulin ENOD18 family proteinF:unknown;P:response to stress;C:plasma membrane, membrane;PFMBOO.I.C.G.H.G.
61.399.841.5At1g63530842658-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVO.I.C.G.H.G.
50.399.8113.5At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFO.I.C.G.H.G.
46.399.8118.9At3g29970822700germination protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
44.299.881.0At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
44.099.8438.2At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.O.I.C.G.H.G.
32.199.7243.5At5g12030831076AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.O.I.C.G.H.G.
28.999.750.0At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.C.G.H.G.
27.599.7188.6At1g72430843575auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
26.699.7197.2At4g2187082827626.5 kDa class P-related heat shock protein (HSP26.5-P)F:unknown;P:response to heat;C:cellular_component unknown;PBOFAO.I.C.G.H.G.
22.899.644.0At4g32690829404GLB3Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.O.I.C.G.H.G.
22.699.6165.6At3g05490819714RALFL22 (ralf-like 22)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
22.599.6160.3At4g10040826595CYTC-2 (cytochrome c-2)Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers.O.I.C.G.H.G.
22.599.630.2At1g59660842256nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.C.G.H.G.
20.799.6173.0At4g10100826601CNX7molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.O.I.C.G.H.G.
19.799.621.0At5g02200830832FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.O.I.C.G.H.G.
19.799.620.8At2g20500816571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
19.599.6533.6At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
19.599.6155.6At2g36835818256unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;PO.I.C.G.H.G.
19.199.6134.9At2g31200817676ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)Encodes actin depolymerizing factor 6 (ADF6).O.I.C.G.H.G.
18.499.552.5At1g47960841214C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.O.I.C.G.H.G.
18.399.5338.5At3g05730819742-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
18.399.5107.4At1g72060843537serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
18.099.5135.5At1g5405084184317.4 kDa class III heat shock protein (HSP17.4-CIII)F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMO.I.C.G.H.G.
17.899.5125.6At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.199.5198.4At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
17.199.518.1At5g63905836511unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PBO.I.C.G.H.G.
16.999.550.5At5g66490836781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
16.599.5302.0At1g69410843273ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410.O.I.C.G.H.G.
16.399.5322.9At3g11930820366universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
16.299.5110.5At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
15.699.578.1At1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
15.499.5458.9At5g58070835919TIL (TEMPERATURE-INDUCED LIPOCALIN)Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.O.I.C.G.H.G.
15.299.4254.4At4g23680828468major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
15.299.411.7At1g44414841028unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.599.4590.9At3g05590819725RPL18 (RIBOSOMAL PROTEIN L18)Encodes cytoplasmic ribosomal protein L18.O.I.C.G.H.G.
14.399.473.2At2g35635818132UBQ7encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.O.I.C.G.H.G.
14.299.4308.4At4g27450828854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMFO.I.C.G.H.G.
14.199.436.4At1g72800843611nuM1-relatedF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAVO.I.C.G.H.G.
13.499.424.8At3g45730823715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.899.371.7At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
12.599.358.1At3g24100821996-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
12.499.336.6At2g35290818096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.199.3174.4At3g46230823768ATHSP17.4member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seedsO.I.C.G.H.G.
12.099.3184.8At4g15800827260RALFL33 (ralf-like 33)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
11.899.3170.2At1g65490842861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.899.3125.8At1g70660843403MMZ2 (MMS ZWEI HOMOLOGE 2)MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible.O.I.C.G.H.G.
11.699.322.3At1g30500839929NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
11.499.332.6At1g31340840023RUB1 (RELATED TO UBIQUITIN 1)Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.O.I.C.G.H.G.
11.499.314.7At5g1620083147850S ribosomal protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.399.386.5At5g65260836651polyadenylate-binding protein family protein / PABP family proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
11.099.2182.6At1g19020838483unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.227.1At2g46610819273arginine/serine-rich splicing factor, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVAO.I.C.G.H.G.
11.099.223.0At4g23493828448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.999.2139.3At1g70890843427MLP43 (MLP-LIKE PROTEIN 43)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:chloroplast;PO.I.C.G.H.G.
10.999.27.7At4g30380829161EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBOO.I.C.G.H.G.
10.899.2142.3At2g41730818772unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.399.2217.1At2g42680818868MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.O.I.C.G.H.G.
10.199.267.7At1g55805842030BolA-like family proteinF:transcription regulator activity;P:biological_process unknown;C:chloroplast;BOMFPAO.I.C.G.H.G.
10.199.233.6At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
10.099.225.4At5g04850830364VPS60.2F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MFPOAO.I.C.G.H.G.
9.899.1144.9At5g51720835246unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPOO.I.C.G.H.G.
9.799.128.9At3g27100822329-F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;MPOFO.I.C.G.H.G.
9.699.1401.6At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
9.699.1110.0At1g29850839863double-stranded DNA-binding family proteinF:double-stranded DNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;AMOFPBO.I.C.G.H.G.
9.699.151.6At5g09960830857unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
9.499.1182.7At1g01170839263ozone-responsive stress-related protein, putativeF:molecular_function unknown;P:response to stress;C:mitochondrion, membrane;PO.I.C.G.H.G.
9.499.122.6At1g51360841560DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)Involved in defense against fungal pathogens and located in cytosol.O.I.C.G.H.G.
9.299.1185.4At5g16470831508zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
9.199.1393.2At1g25275839111unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.199.1142.6At1g15270838094-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFPOO.I.C.G.H.G.
9.199.195.5At4g04840825821methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
9.199.163.7At5g5144083521823.5 kDa mitochondrial small heat shock protein (HSP23.5-M)F:molecular_function unknown;P:response to heat;C:unknown;BPOAFMO.I.C.G.H.G.
9.199.143.6At5g01740831686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
9.099.1223.0At5g02120831799OHP (ONE HELIX PROTEIN)Encodes a one helix protein homologous to cyanobacterial high-light inducible proteins. The protein is localized to the thylakoid membrane and its transcript is transiently induced by exposure to high light conditions.O.I.C.G.H.G.
9.099.1132.5At1g33810840273unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PO.I.C.G.H.G.
9.099.172.0At1g74880843827NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.O.I.C.G.H.G.
9.099.149.5At2g21640816702-Encodes a protein of unknown function that is a marker for oxidative stress response.O.I.C.G.H.G.
8.899.0217.4At3g12630820443zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
8.699.086.2At4g25670828672unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
8.699.051.4At3g15900820833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
8.699.051.2At1g64750842783ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.



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