Microarray experiments to specifically-expressed genes

GSM ID GSM245474
Assay name 9 hr Hypoxia Stress IP RNA Rep 1
GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
552.7100.0124.7At1g63530842658-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVO.I.C.G.H.G.
270.7100.077.0At2g20500816571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
193.7100.0169.6At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
181.2100.0428.5At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PO.I.C.G.H.G.
163.399.981.2At1g59660842256nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.C.G.H.G.
148.899.9195.3At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFO.I.C.G.H.G.
133.699.9130.7At1g69680843304-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
128.399.9293.1At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
106.699.9320.1At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVO.I.C.G.H.G.
93.999.9113.4At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
86.399.9276.8At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
78.899.9427.7At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
71.499.9145.5At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
69.699.9551.3At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.O.I.C.G.H.G.
68.599.9308.1At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
68.399.9182.1At1g10140837551-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POO.I.C.G.H.G.
59.099.8205.5At1g76650843998calcium-binding EF hand family proteinF:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOBO.I.C.G.H.G.
56.999.8154.7At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
53.999.8145.3At1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
50.799.877.7At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.C.G.H.G.
46.099.834.2At5g26200832689mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
43.199.868.0At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
42.599.8138.8At1g30260839906-F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;PO.I.C.G.H.G.
40.099.866.8At2g47520819365AP2 domain-containing transcription factor, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
38.199.8264.1At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.099.7481.7At3g05730819742-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
36.299.758.4At1g72800843611nuM1-relatedF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAVO.I.C.G.H.G.
35.599.7104.2At3g29970822700germination protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.999.7132.2At1g68670843197myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
31.399.7573.3At1g09070837428SRC2 (SOYBEAN GENE REGULATED BY COLD-2)SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.O.I.C.G.H.G.
30.899.7216.2At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAO.I.C.G.H.G.
30.799.7215.8At5g11090830977serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
30.399.7123.0At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
30.199.750.6At4g32690829404GLB3Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.O.I.C.G.H.G.
29.499.7634.2At5g58070835919TIL (TEMPERATURE-INDUCED LIPOCALIN)Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.O.I.C.G.H.G.
29.199.7652.6At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
28.099.7381.9At4g35750829728Rho-GTPase-activating protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
27.899.7422.2At3g11930820366universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
26.999.7223.0At5g12030831076AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.O.I.C.G.H.G.
26.199.7208.7At2g36950818269heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
25.999.7133.0At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
25.699.723.9At5g02200830832FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.O.I.C.G.H.G.
24.599.671.6At5g01740831686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
24.299.627.8At4g21510828236F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.999.6234.4At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
23.799.6318.0At4g23680828468major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
23.799.6247.6At5g25280832600serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
23.599.6626.5At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
23.499.694.9At3g23170821893unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.099.6249.5At3g26510822258octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBVO.I.C.G.H.G.
22.699.640.2At5g42200834225zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
22.499.694.6At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
21.499.6166.7At1g72430843575auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
21.199.666.6At3g52720824438ACA1 (ALPHA CARBONIC ANHYDRASE 1)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.C.G.H.G.
20.899.643.9At1g31340840023RUB1 (RELATED TO UBIQUITIN 1)Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.O.I.C.G.H.G.
20.299.6120.5At3g19240821458-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPMO.I.C.G.H.G.
19.799.6203.0At3g03270821303universal stress protein (USP) family protein / early nodulin ENOD18 family proteinF:unknown;P:response to stress;C:plasma membrane, membrane;PFMBOO.I.C.G.H.G.
19.599.683.8At5g13240831164transcription regulatorF:transcription regulator activity;P:negative regulation of transcription from RNA polymerase III promoter;C:nucleus;MFOPO.I.C.G.H.G.
19.499.6101.3At5g37260833700RVE2 (REVEILLE 2)Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.O.I.C.G.H.G.
18.699.5184.8At5g54960835587PDC2 (pyruvate decarboxylase-2)pyruvate decarboxylase-2O.I.C.G.H.G.
18.199.5184.6At2g41730818772unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.799.5279.9At4g19880827734-F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMAO.I.C.G.H.G.
17.499.5341.2At4g27450828854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMFO.I.C.G.H.G.
17.299.5568.9At5g54940835585eukaryotic translation initiation factor SUI1, putativeF:translation initiation factor activity;P:translational initiation, translation;C:cellular_component unknown;MPFOABVO.I.C.G.H.G.
17.299.5128.1At2g31200817676ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)Encodes actin depolymerizing factor 6 (ADF6).O.I.C.G.H.G.
16.899.5280.4At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFO.I.C.G.H.G.
16.399.5114.4At5g56600835761PRF3 (PROFILIN 3)Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.O.I.C.G.H.G.
16.099.556.2At2g36790818251UGT73C6 (UDP-glucosyl transferase 73C6)The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives.O.I.C.G.H.G.
16.099.531.8At1g70560843393TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.O.I.C.G.H.G.
15.799.5101.7At3g50440824208MES10 (METHYL ESTERASE 10)Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
15.599.564.2At1g74940843833senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
15.199.459.4At5g28630832966glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
14.899.4201.2At2g20670816595unknown proteinF:unknown;P:unknown;C:chloroplast;POO.I.C.G.H.G.
14.599.445.7At1g29510839828SAUR68 (SMALL AUXIN UPREGULATED 68)F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
14.099.430.2At4g15680827245glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOBO.I.C.G.H.G.
13.799.445.2At1g47960841214C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.O.I.C.G.H.G.
13.699.434.5At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAO.I.C.G.H.G.
13.299.4473.4At1g25275839111unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.199.478.0At2g36220818194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.599.3548.3At3g05590819725RPL18 (RIBOSOMAL PROTEIN L18)Encodes cytoplasmic ribosomal protein L18.O.I.C.G.H.G.
12.599.332.8At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.C.G.H.G.
12.199.3221.5At3g58680825037MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B)One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.O.I.C.G.H.G.
11.999.3250.6At5g67600836896unknown proteinF:unknown;P:unknown;C:plasma membrane;MOPFBVO.I.C.G.H.G.
11.899.344.4At1g05560837058UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1)A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.O.I.C.G.H.G.
11.799.376.4At1g15040838069glutamine amidotransferase-relatedF:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
11.799.323.2At3g45730823715unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.699.342.1At4g27030828811small conjugating protein ligaseF:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBVO.I.C.G.H.G.
11.699.330.0At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAO.I.C.G.H.G.
11.599.373.7At1g03610838961unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
11.599.322.1At4g16000827284unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.499.3152.1At4g34131829559UGT73B3 (UDP-glucosyl transferase 73B3)F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOFO.I.C.G.H.G.
11.399.315.0At5g17450831611heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:unknown;PFBMO.I.C.G.H.G.
11.299.2306.0At1g80920844432J8J8 mRNA, nuclear gene encoding plastid protein, completeO.I.C.G.H.G.
11.099.224.8At4g24890828591PAP24 (PURPLE ACID PHOSPHATASE 24)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMFO.I.C.G.H.G.
10.999.2222.5At5g59820836103RHL41 (RESPONSIVE TO HIGH LIGHT 41)Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.O.I.C.G.H.G.
10.699.2217.7At5g20010832123RAN-1A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.O.I.C.G.H.G.
10.699.2133.1At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.599.2181.4At1g12780837834UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.O.I.C.G.H.G.
10.599.216.4At3g46490823802iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
10.199.210.7At1g52550841686unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POVBMO.I.C.G.H.G.



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