Microarray experiments to specifically-expressed genes

GSM ID GSM245469
Assay name 9 hr Hypoxia Stress Total RNA Rep 1
GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
193.9100.073.9At1g63530842658-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVO.I.C.G.H.G.
115.499.9212.6At1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
101.899.9207.0At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
93.899.9155.0At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFO.I.C.G.H.G.
82.799.957.8At1g59660842256nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.C.G.H.G.
78.599.9100.2At1g69680843304-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
78.299.9281.5At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PO.I.C.G.H.G.
77.599.985.4At1g72800843611nuM1-relatedF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAVO.I.C.G.H.G.
74.499.940.3At2g20500816571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
70.499.9260.2At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVO.I.C.G.H.G.
65.999.898.9At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
53.099.8217.0At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
48.099.8257.8At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
40.799.830.2At5g02200830832FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.O.I.C.G.H.G.
35.499.7309.3At3g26510822258octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBVO.I.C.G.H.G.
35.099.729.8At5g26200832689mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
33.199.762.7At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.C.G.H.G.
32.899.7378.2At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.O.I.C.G.H.G.
32.499.793.6At1g55810842031uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeF:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
30.899.7267.1At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
30.799.7452.9At4g27450828854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMFO.I.C.G.H.G.
29.599.7248.9At3g03270821303universal stress protein (USP) family protein / early nodulin ENOD18 family proteinF:unknown;P:response to stress;C:plasma membrane, membrane;PFMBOO.I.C.G.H.G.
28.199.7137.3At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.399.712.2At4g30380829161EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBOO.I.C.G.H.G.
25.299.686.5At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.699.642.0At5g42200834225zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
24.199.6326.7At4g19880827734-F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMAO.I.C.G.H.G.
24.199.6113.2At5g37260833700RVE2 (REVEILLE 2)Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.O.I.C.G.H.G.
21.999.6293.7At5g19550832075ASP2 (ASPARTATE AMINOTRANSFERASE 2)Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.O.I.C.G.H.G.
21.999.626.4At4g21510828236F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.499.657.7At5g17300831595myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVBO.I.C.G.H.G.
21.399.6123.4At1g76650843998calcium-binding EF hand family proteinF:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOBO.I.C.G.H.G.
20.899.6100.6At1g10140837551-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POO.I.C.G.H.G.
20.599.6176.5At5g11090830977serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
19.299.695.3At1g03610838961unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
19.199.6528.9At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
18.999.571.1At1g63090842612AtPP2-A11 (Phloem protein 2-A11)F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
18.799.5312.2At4g35750829728Rho-GTPase-activating protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
18.699.5243.0At3g27770822398unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
18.699.5115.5At3g19240821458-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPMO.I.C.G.H.G.
18.299.5552.2At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
16.499.5173.3At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.399.547.3At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.299.571.4At3g47430823897PEX11Bmember of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.O.I.C.G.H.G.
15.799.529.2At1g51360841560DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)Involved in defense against fungal pathogens and located in cytosol.O.I.C.G.H.G.
15.299.491.3At1g68670843197myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
15.099.475.5At5g01220831888SQD2 (sulfoquinovosyldiacylglycerol 2)involved in sulfolipid biosynthesisO.I.C.G.H.G.
14.799.443.9At3g56040824770UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3)F:unknown;P:biological_process unknown;C:chloroplast;PFOMBO.I.C.G.H.G.
14.599.499.6At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
14.299.4161.7At5g54960835587PDC2 (pyruvate decarboxylase-2)pyruvate decarboxylase-2O.I.C.G.H.G.
13.599.4293.7At3g11930820366universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMO.I.C.G.H.G.
13.599.4252.0At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFO.I.C.G.H.G.
13.499.432.2At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAO.I.C.G.H.G.
13.099.444.1At1g47960841214C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.O.I.C.G.H.G.
12.899.350.2At1g33050840200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPO.I.C.G.H.G.
12.699.3116.9At1g03090838362MCCAMCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.O.I.C.G.H.G.
12.499.3322.9At2g46220819229unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPMOO.I.C.G.H.G.
12.399.351.0At3g52720824438ACA1 (ALPHA CARBONIC ANHYDRASE 1)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.C.G.H.G.
12.199.3125.4At1g72430843575auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
11.999.3404.0At5g58070835919TIL (TEMPERATURE-INDUCED LIPOCALIN)Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.O.I.C.G.H.G.
11.999.367.8At3g23170821893unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.699.358.6At5g41080834110glycerophosphoryl diester phosphodiesterase family proteinF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
11.599.3176.8At2g20670816595unknown proteinF:unknown;P:unknown;C:chloroplast;POO.I.C.G.H.G.
11.599.3172.4At5g25280832600serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
11.499.3346.2At1g09070837428SRC2 (SOYBEAN GENE REGULATED BY COLD-2)SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.O.I.C.G.H.G.
11.499.389.9At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
10.799.230.1At4g32690829404GLB3Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.O.I.C.G.H.G.
10.599.272.4At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
10.499.220.0At1g75340843870zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;OMFBPVAO.I.C.G.H.G.
10.299.228.0At2g18670816382zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
10.099.270.7At1g15040838069glutamine amidotransferase-relatedF:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
10.099.220.7At1g30500839929NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
9.799.1174.7At1g12780837834UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.O.I.C.G.H.G.
9.699.140.0At5g54130835500--O.I.C.G.H.G.
9.599.158.4At5g13240831164transcription regulatorF:transcription regulator activity;P:negative regulation of transcription from RNA polymerase III promoter;C:nucleus;MFOPO.I.C.G.H.G.
9.399.1203.9At5g20010832123RAN-1A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.O.I.C.G.H.G.
9.199.1139.0At3g04730819633IAA16early auxin-induced (IAA16)O.I.C.G.H.G.
9.199.1131.1At5g03240831899UBQ3 (POLYUBIQUITIN 3)encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.O.I.C.G.H.G.
9.199.186.4At5g53160835397unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.199.176.2At3g45300823668IVD (ISOVALERYL-COA-DEHYDROGENASE)Encodes isovaleryl-coenzyme a dehydrogenase.O.I.C.G.H.G.
8.999.030.8At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
8.999.019.5At1g67600843081-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPO.I.C.G.H.G.



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