CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM245469

Assay name 9 hr Hypoxia Stress Total RNA Rep 1

GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
193.9 100.0 73.9 At1g63530 842658 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV O.I. C.G. H.G.
115.4 99.9 212.6 At1g80670 844406 transducin family protein / WD-40 repeat family protein This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase O.I. C.G. H.G.
101.8 99.9 207.0 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
93.8 99.9 155.0 At2g17850 816295 - F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF O.I. C.G. H.G.
82.7 99.9 57.8 At1g59660 842256 nucleoporin family protein F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA O.I. C.G. H.G.
78.5 99.9 100.2 At1g69680 843304 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
78.2 99.9 281.5 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P O.I. C.G. H.G.
77.5 99.9 85.4 At1g72800 843611 nuM1-related F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV O.I. C.G. H.G.
74.4 99.9 40.3 At2g20500 816571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
70.4 99.9 260.2 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
65.9 99.8 98.9 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
53.0 99.8 217.0 At1g33055 840201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
48.0 99.8 257.8 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.7 99.8 30.2 At5g02200 830832 FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE) Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA. O.I. C.G. H.G.
35.4 99.7 309.3 At3g26510 822258 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBV O.I. C.G. H.G.
35.0 99.7 29.8 At5g26200 832689 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
33.1 99.7 62.7 At2g29870 817537 major intrinsic family protein / MIP family protein F:water channel activity;P:transport;C:membrane;BPMOFA O.I. C.G. H.G.
32.8 99.7 378.2 At2g16060 816103 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. O.I. C.G. H.G.
32.4 99.7 93.6 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
30.8 99.7 267.1 At4g33070 829444 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:membrane;BOFPAMV O.I. C.G. H.G.
30.7 99.7 452.9 At4g27450 828854 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF O.I. C.G. H.G.
29.5 99.7 248.9 At3g03270 821303 universal stress protein (USP) family protein / early nodulin ENOD18 family protein F:unknown;P:response to stress;C:plasma membrane, membrane;PFMBO O.I. C.G. H.G.
28.1 99.7 137.3 At5g66985 836833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.3 99.7 12.2 At4g30380 829161 EXLB2 (EXPANSIN-LIKE B2 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO O.I. C.G. H.G.
25.2 99.6 86.5 At5g20790 832202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.6 99.6 42.0 At5g42200 834225 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
24.1 99.6 326.7 At4g19880 827734 - F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA O.I. C.G. H.G.
24.1 99.6 113.2 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
21.9 99.6 293.7 At5g19550 832075 ASP2 (ASPARTATE AMINOTRANSFERASE 2) Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light. O.I. C.G. H.G.
21.9 99.6 26.4 At4g21510 828236 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.4 99.6 57.7 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.
21.3 99.6 123.4 At1g76650 843998 calcium-binding EF hand family protein F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB O.I. C.G. H.G.
20.8 99.6 100.6 At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO O.I. C.G. H.G.
20.5 99.6 176.5 At5g11090 830977 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
19.2 99.6 95.3 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
19.1 99.6 528.9 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
18.9 99.5 71.1 At1g63090 842612 AtPP2-A11 (Phloem protein 2-A11) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
18.7 99.5 312.2 At4g35750 829728 Rho-GTPase-activating protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
18.6 99.5 243.0 At3g27770 822398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
18.6 99.5 115.5 At3g19240 821458 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM O.I. C.G. H.G.
18.2 99.5 552.2 At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. O.I. C.G. H.G.
16.4 99.5 173.3 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.3 99.5 47.3 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.2 99.5 71.4 At3g47430 823897 PEX11B member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. O.I. C.G. H.G.
15.7 99.5 29.2 At1g51360 841560 DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1) Involved in defense against fungal pathogens and located in cytosol. O.I. C.G. H.G.
15.2 99.4 91.3 At1g68670 843197 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
15.0 99.4 75.5 At5g01220 831888 SQD2 (sulfoquinovosyldiacylglycerol 2) involved in sulfolipid biosynthesis O.I. C.G. H.G.
14.7 99.4 43.9 At3g56040 824770 UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3) F:unknown;P:biological_process unknown;C:chloroplast;PFOMB O.I. C.G. H.G.
14.5 99.4 99.6 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
14.2 99.4 161.7 At5g54960 835587 PDC2 (pyruvate decarboxylase-2) pyruvate decarboxylase-2 O.I. C.G. H.G.
13.5 99.4 293.7 At3g11930 820366 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. C.G. H.G.
13.5 99.4 252.0 At5g19120 832032 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF O.I. C.G. H.G.
13.4 99.4 32.2 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA O.I. C.G. H.G.
13.0 99.4 44.1 At1g47960 841214 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. O.I. C.G. H.G.
12.8 99.3 50.2 At1g33050 840200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP O.I. C.G. H.G.
12.6 99.3 116.9 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
12.4 99.3 322.9 At2g46220 819229 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BPMO O.I. C.G. H.G.
12.3 99.3 51.0 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
12.1 99.3 125.4 At1g72430 843575 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
11.9 99.3 404.0 At5g58070 835919 TIL (TEMPERATURE-INDUCED LIPOCALIN) Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane. O.I. C.G. H.G.
11.9 99.3 67.8 At3g23170 821893 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.6 99.3 58.6 At5g41080 834110 glycerophosphoryl diester phosphodiesterase family protein F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
11.5 99.3 176.8 At2g20670 816595 unknown protein F:unknown;P:unknown;C:chloroplast;PO O.I. C.G. H.G.
11.5 99.3 172.4 At5g25280 832600 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
11.4 99.3 346.2 At1g09070 837428 SRC2 (SOYBEAN GENE REGULATED BY COLD-2) SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting. O.I. C.G. H.G.
11.4 99.3 89.9 At1g43800 840977 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM O.I. C.G. H.G.
10.7 99.2 30.1 At4g32690 829404 GLB3 Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast. O.I. C.G. H.G.
10.5 99.2 72.4 At1g67910 843119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.4 99.2 20.0 At1g75340 843870 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;OMFBPVA O.I. C.G. H.G.
10.2 99.2 28.0 At2g18670 816382 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
10.0 99.2 70.7 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
10.0 99.2 20.7 At1g30500 839929 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO O.I. C.G. H.G.
9.7 99.1 174.7 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. C.G. H.G.
9.6 99.1 40.0 At5g54130 835500 - - O.I. C.G. H.G.
9.5 99.1 58.4 At5g13240 831164 transcription regulator F:transcription regulator activity;P:negative regulation of transcription from RNA polymerase III promoter;C:nucleus;MFOP O.I. C.G. H.G.
9.3 99.1 203.9 At5g20010 832123 RAN-1 A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression. O.I. C.G. H.G.
9.1 99.1 139.0 At3g04730 819633 IAA16 early auxin-induced (IAA16) O.I. C.G. H.G.
9.1 99.1 131.1 At5g03240 831899 UBQ3 (POLYUBIQUITIN 3) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments. O.I. C.G. H.G.
9.1 99.1 86.4 At5g53160 835397 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.1 99.1 76.2 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
8.9 99.0 30.8 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
8.9 99.0 19.5 At1g67600 843081 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
193.9	100.0	73.9	At1g63530	842658	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV	O.I.	C.G.	H.G.
115.4	99.9	212.6	At1g80670	844406	transducin family protein / WD-40 repeat family protein	This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase	O.I.	C.G.	H.G.
101.8	99.9	207.0	At5g39890	833986	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
93.8	99.9	155.0	At2g17850	816295	-	F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMF	O.I.	C.G.	H.G.
82.7	99.9	57.8	At1g59660	842256	nucleoporin family protein	F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA	O.I.	C.G.	H.G.
78.5	99.9	100.2	At1g69680	843304	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
78.2	99.9	281.5	At4g10270	826619	wound-responsive family protein	F:molecular_function unknown;P:response to wounding;C:unknown;P	O.I.	C.G.	H.G.
77.5	99.9	85.4	At1g72800	843611	nuM1-related	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBFMOAV	O.I.	C.G.	H.G.
74.4	99.9	40.3	At2g20500	816571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
70.4	99.9	260.2	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
65.9	99.8	98.9	At5g10040	830868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
53.0	99.8	217.0	At1g33055	840201	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
48.0	99.8	257.8	At3g02550	821112	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.7	99.8	30.2	At5g02200	830832	FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)	Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.	O.I.	C.G.	H.G.
35.4	99.7	309.3	At3g26510	822258	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFMBV	O.I.	C.G.	H.G.
35.0	99.7	29.8	At5g26200	832689	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
33.1	99.7	62.7	At2g29870	817537	major intrinsic family protein / MIP family protein	F:water channel activity;P:transport;C:membrane;BPMOFA	O.I.	C.G.	H.G.
32.8	99.7	378.2	At2g16060	816103	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.	O.I.	C.G.	H.G.
32.4	99.7	93.6	At1g55810	842031	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
30.8	99.7	267.1	At4g33070	829444	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:membrane;BOFPAMV	O.I.	C.G.	H.G.
30.7	99.7	452.9	At4g27450	828854	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMF	O.I.	C.G.	H.G.
29.5	99.7	248.9	At3g03270	821303	universal stress protein (USP) family protein / early nodulin ENOD18 family protein	F:unknown;P:response to stress;C:plasma membrane, membrane;PFMBO	O.I.	C.G.	H.G.
28.1	99.7	137.3	At5g66985	836833	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.3	99.7	12.2	At4g30380	829161	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO	O.I.	C.G.	H.G.
25.2	99.6	86.5	At5g20790	832202	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.6	99.6	42.0	At5g42200	834225	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
24.1	99.6	326.7	At4g19880	827734	-	F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA	O.I.	C.G.	H.G.
24.1	99.6	113.2	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
21.9	99.6	293.7	At5g19550	832075	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.	O.I.	C.G.	H.G.
21.9	99.6	26.4	At4g21510	828236	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.4	99.6	57.7	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.
21.3	99.6	123.4	At1g76650	843998	calcium-binding EF hand family protein	F:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOB	O.I.	C.G.	H.G.
20.8	99.6	100.6	At1g10140	837551	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO	O.I.	C.G.	H.G.
20.5	99.6	176.5	At5g11090	830977	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
19.2	99.6	95.3	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
19.1	99.6	528.9	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
18.9	99.5	71.1	At1g63090	842612	AtPP2-A11 (Phloem protein 2-A11)	F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.7	99.5	312.2	At4g35750	829728	Rho-GTPase-activating protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
18.6	99.5	243.0	At3g27770	822398	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
18.6	99.5	115.5	At3g19240	821458	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM	O.I.	C.G.	H.G.
18.2	99.5	552.2	At1g77120	844047	ADH1 (ALCOHOL DEHYDROGENASE 1)	Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.	O.I.	C.G.	H.G.
16.4	99.5	173.3	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.3	99.5	47.3	At4g33560	829495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.2	99.5	71.4	At3g47430	823897	PEX11B	member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.	O.I.	C.G.	H.G.
15.7	99.5	29.2	At1g51360	841560	DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)	Involved in defense against fungal pathogens and located in cytosol.	O.I.	C.G.	H.G.
15.2	99.4	91.3	At1g68670	843197	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
15.0	99.4	75.5	At5g01220	831888	SQD2 (sulfoquinovosyldiacylglycerol 2)	involved in sulfolipid biosynthesis	O.I.	C.G.	H.G.
14.7	99.4	43.9	At3g56040	824770	UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3)	F:unknown;P:biological_process unknown;C:chloroplast;PFOMB	O.I.	C.G.	H.G.
14.5	99.4	99.6	At5g15120	831364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
14.2	99.4	161.7	At5g54960	835587	PDC2 (pyruvate decarboxylase-2)	pyruvate decarboxylase-2	O.I.	C.G.	H.G.
13.5	99.4	293.7	At3g11930	820366	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	C.G.	H.G.
13.5	99.4	252.0	At5g19120	832032	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF	O.I.	C.G.	H.G.
13.4	99.4	32.2	At3g27220	822341	kelch repeat-containing protein	F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA	O.I.	C.G.	H.G.
13.0	99.4	44.1	At1g47960	841214	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.	O.I.	C.G.	H.G.
12.8	99.3	50.2	At1g33050	840200	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP	O.I.	C.G.	H.G.
12.6	99.3	116.9	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
12.4	99.3	322.9	At2g46220	819229	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BPMO	O.I.	C.G.	H.G.
12.3	99.3	51.0	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
12.1	99.3	125.4	At1g72430	843575	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
11.9	99.3	404.0	At5g58070	835919	TIL (TEMPERATURE-INDUCED LIPOCALIN)	Encodes a temperature-induced lipocalin TIL1. Involved in thermotolerance. Peripherally associated with plasma membrane.	O.I.	C.G.	H.G.
11.9	99.3	67.8	At3g23170	821893	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.6	99.3	58.6	At5g41080	834110	glycerophosphoryl diester phosphodiesterase family protein	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
11.5	99.3	176.8	At2g20670	816595	unknown protein	F:unknown;P:unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
11.5	99.3	172.4	At5g25280	832600	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
11.4	99.3	346.2	At1g09070	837428	SRC2 (SOYBEAN GENE REGULATED BY COLD-2)	SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.	O.I.	C.G.	H.G.
11.4	99.3	89.9	At1g43800	840977	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM	O.I.	C.G.	H.G.
10.7	99.2	30.1	At4g32690	829404	GLB3	Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast.	O.I.	C.G.	H.G.
10.5	99.2	72.4	At1g67910	843119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.4	99.2	20.0	At1g75340	843870	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;OMFBPVA	O.I.	C.G.	H.G.
10.2	99.2	28.0	At2g18670	816382	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
10.0	99.2	70.7	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
10.0	99.2	20.7	At1g30500	839929	NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)	F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO	O.I.	C.G.	H.G.
9.7	99.1	174.7	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	C.G.	H.G.
9.6	99.1	40.0	At5g54130	835500	-	-	O.I.	C.G.	H.G.
9.5	99.1	58.4	At5g13240	831164	transcription regulator	F:transcription regulator activity;P:negative regulation of transcription from RNA polymerase III promoter;C:nucleus;MFOP	O.I.	C.G.	H.G.
9.3	99.1	203.9	At5g20010	832123	RAN-1	A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.	O.I.	C.G.	H.G.
9.1	99.1	139.0	At3g04730	819633	IAA16	early auxin-induced (IAA16)	O.I.	C.G.	H.G.
9.1	99.1	131.1	At5g03240	831899	UBQ3 (POLYUBIQUITIN 3)	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	O.I.	C.G.	H.G.
9.1	99.1	86.4	At5g53160	835397	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.1	99.1	76.2	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
8.9	99.0	30.8	At4g24110	828511	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
8.9	99.0	19.5	At1g67600	843081	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP	O.I.	C.G.	H.G.

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GSM ID	GSM245469
Assay name	9 hr Hypoxia Stress Total RNA Rep 1
GSE experiment	GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Microarray experiments to specifically-expressed genes

GSM ID GSM245469 Assay name 9 hr Hypoxia Stress Total RNA Rep 1 GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

GSM ID GSM245469

Assay name 9 hr Hypoxia Stress Total RNA Rep 1

GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation