Microarray experiments to specifically-expressed genes

GSM ID GSM245467
Assay name 2 hr Hypoxia Stress Total RNA Rep 1
GSE experiment GSE9719: Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
118.499.954.8At5g26200832689mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
100.199.984.7At5g42200834225zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
91.499.9196.1At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
78.599.9330.0At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
74.499.9274.7At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PO.I.C.G.H.G.
59.199.8200.6At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
55.699.865.5At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAO.I.C.G.H.G.
39.699.868.6At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.C.G.H.G.
38.699.872.7At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
38.299.8134.4At1g03610838961unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
38.199.8184.1At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.199.771.2At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.199.7273.0At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
31.899.792.7At1g55810842031uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeF:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
31.399.7109.9At3g23170821893unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
30.399.788.1At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFO.I.C.G.H.G.
27.699.7100.1At1g13300837890myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMFO.I.C.G.H.G.
26.699.748.3At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAO.I.C.G.H.G.
23.499.679.1At1g63090842612AtPP2-A11 (Phloem protein 2-A11)F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
21.799.6124.6At1g76650843998calcium-binding EF hand family proteinF:calcium ion binding;P:response to wounding;C:plasma membrane;MPFOBO.I.C.G.H.G.
20.099.6115.8At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.099.5169.8At5g11090830977serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBO.I.C.G.H.G.
17.699.543.5At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
17.599.560.5At5g01740831686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
16.999.5160.0At3g13310820531DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAVO.I.C.G.H.G.
15.999.5152.2At5g47910834842RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D)NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.O.I.C.G.H.G.
15.399.4140.9At1g72430843575auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
14.699.465.9At5g41080834110glycerophosphoryl diester phosphodiesterase family proteinF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
14.499.4117.5At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVO.I.C.G.H.G.
13.299.441.0At1g69680843304-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
12.999.380.2At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
12.999.339.9At5g61440836265ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5)Encodes a member of the thioredoxin family protein. Located in the chloroplast.O.I.C.G.H.G.
12.999.330.9At5g51460835220ATTPPAhomologous to the C-terminal part of microbial trehalose-6-phosphate phosphatasesO.I.C.G.H.G.
12.499.3287.3At4g27450828854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMFO.I.C.G.H.G.
12.499.347.6At5g44730834502haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFPO.I.C.G.H.G.
12.299.329.2At4g32840829420PFK6 (PHOSPHOFRUCTOKINASE 6)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.C.G.H.G.
11.699.3177.1At3g26510822258octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBVO.I.C.G.H.G.
11.699.321.7At1g59660842256nucleoporin family proteinF:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVAO.I.C.G.H.G.
11.299.2241.2At4g35750829728Rho-GTPase-activating protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
11.299.2229.1At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFO.I.C.G.H.G.
11.099.289.7At1g25550839142myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
10.599.247.1At3g52720824438ACA1 (ALPHA CARBONIC ANHYDRASE 1)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.C.G.H.G.
10.499.275.5At1g68670843197myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
10.499.258.1At3g07350819923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.399.254.1At5g62520836372SRO5 (SIMILAR TO RCD ONE 5)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.O.I.C.G.H.G.
10.399.225.8At2g36970818271UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
10.299.270.3At1g10140837551-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POO.I.C.G.H.G.
10.299.252.2At1g74940843833senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.899.135.7At3g56040824770UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3)F:unknown;P:biological_process unknown;C:chloroplast;PFOMBO.I.C.G.H.G.
9.499.1202.6At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.O.I.C.G.H.G.
9.299.1118.1At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAO.I.C.G.H.G.
9.199.177.2At3g50440824208MES10 (METHYL ESTERASE 10)Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
9.099.168.9At5g37260833700RVE2 (REVEILLE 2)Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.O.I.C.G.H.G.
9.099.126.3At2g18670816382zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
8.999.0186.8At5g19550832075ASP2 (ASPARTATE AMINOTRANSFERASE 2)Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.O.I.C.G.H.G.
8.999.059.2At1g80670844406transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
8.699.0118.7At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
8.699.07.0At3g03840821121auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.



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