Microarray experiments to specifically-expressed genes

GSM ID GSM244455
Assay name Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1
GSE experiment GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
508.9100.0109.3At3g61390825311U-box domain-containing proteinF:unknown;P:unknown;C:unknown;OMFPBAVO.I.C.G.H.G.
448.8100.0249.0At3g28910822525MYB30 (MYB DOMAIN PROTEIN 30)transcription factor myb homologueO.I.C.G.H.G.
207.2100.0186.8At2g45760819184BAP2 (BON ASSOCIATION PROTEIN 2)encodes a protein that is similar to BONZAI1-binding protein BAP1.O.I.C.G.H.G.
146.899.9212.7At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).O.I.C.G.H.G.
138.199.976.0At1g72890843620disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOO.I.C.G.H.G.
132.699.947.9At1g55780842027metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
132.499.911.9At4g05030825845heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:mitochondrion;PO.I.C.G.H.G.
127.899.9210.9At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.O.I.C.G.H.G.
125.899.9172.3At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
114.499.9104.2At3g21080821660ABC transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
106.999.999.3At3g52430824408PAD4 (PHYTOALEXIN DEFICIENT 4)Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.O.I.C.G.H.G.
99.699.9162.3At2g35980818171YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.O.I.C.G.H.G.
97.099.980.9At5g67340836869armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFBO.I.C.G.H.G.
92.499.997.9At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
91.199.920.8At4g11340826736Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMO.I.C.G.H.G.
87.299.950.1At3g13100820498ATMRP7member of MRP subfamilyO.I.C.G.H.G.
86.699.912.6At1g13310837891-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
84.399.970.6At1g70690843406HWI1 (HOPW1-1-INDUCED GENE1)Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.O.I.C.G.H.G.
84.099.987.3At1g03660839033-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
81.999.928.6At4g38560830013-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFVO.I.C.G.H.G.
77.099.9188.8At1g57630842139disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
72.999.9192.6At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
69.099.9157.4At1g13470837907unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
68.499.945.2At5g43910834413pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAFO.I.C.G.H.G.
66.199.8282.9At5g13200831159GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
66.099.8148.0At4g39030830058EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5)Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient.O.I.C.G.H.G.
66.099.837.6At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.O.I.C.G.H.G.
63.499.8125.8At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBO.I.C.G.H.G.
61.199.8116.9At1g02270839381endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family proteinF:catalytic activity, calcium ion binding;P:response to cold;C:nucleus;MPOFO.I.C.G.H.G.
60.499.8129.8At3g22910821863calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
59.699.8156.6At1g15520838122PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.O.I.C.G.H.G.
57.299.877.9At1g19250838508FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)FMO1 is required for full expression of TIR-NB-LRR–conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.O.I.C.G.H.G.
56.799.8147.3At1g73800--O.I.C.G.H.G.
55.399.849.1At4g04490825779protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
54.999.8228.7At3g11340820307UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.
54.199.866.5At1g08050837321zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BMOPFAVO.I.C.G.H.G.
53.599.843.7At1g32960840190SBT3.3F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFMO.I.C.G.H.G.
53.299.8153.7At1g07000837210ATEXO70B2 (exocyst subunit EXO70 family protein B2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
52.899.8174.7At2g04450814985ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFVO.I.C.G.H.G.
52.299.867.0At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
50.099.887.8At1g64400842748long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVO.I.C.G.H.G.
50.099.842.6At2g13810815864ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMFO.I.C.G.H.G.
49.799.8135.1At2g30770817628CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)putative cytochrome P450O.I.C.G.H.G.
49.699.8102.5At1g02450837800NIMIN1 (NIM1-INTERACTING 1)NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.O.I.C.G.H.G.
48.899.884.6At4g23210828420protein kinase family proteinEncodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.O.I.C.G.H.G.
46.399.8103.9At5g17760831644AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAVO.I.C.G.H.G.
45.999.838.8At2g04430814983atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)F:hydrolase activity;P:unknown;C:cytosol;BOMPAFVO.I.C.G.H.G.
45.899.871.9At1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
44.999.877.4At1g51890841616leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
44.799.8101.9At1g13340837894unknown proteinF:unknown;P:response to oxidative stress;C:unknown;MPFOO.I.C.G.H.G.
43.199.8340.3At5g52640835341ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.O.I.C.G.H.G.
42.999.8114.8At1g72900843621disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOO.I.C.G.H.G.
42.499.8342.9At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
42.499.8158.5At3g47540823908chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
41.899.8275.1At3g07390819927AIR12isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.O.I.C.G.H.G.
41.299.8166.6At1g43910840990AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
40.199.8101.1At1g215253766777-pseudogene of unknown proteinO.I.C.G.H.G.
39.799.843.2At2g42950818896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
38.899.811.8At2g23830816915vesicle-associated membrane protein, putative / VAMP, putativeF:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
37.999.838.8At1g05880837098nucleic acid binding / protein binding / structural molecule/ zinc ion bindingF:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPFO.I.C.G.H.G.
36.099.790.6At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
35.999.7274.0At5g02490831856heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVAO.I.C.G.H.G.
35.099.748.4At1g44130841016nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMFO.I.C.G.H.G.
34.999.78.0At5g65130836637AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
34.899.745.8At1g77810844443galactosyltransferase family proteinF:transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus;MPOBO.I.C.G.H.G.
34.199.733.0At4g12120826820SEC1Bmember of KEULE Gene FamilyO.I.C.G.H.G.
34.099.710.0At2g11270815597citrate synthase-relatedF:transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;P:cellular carbohydrate metabolic process;C:cellular_component unknown;MPO.I.C.G.H.G.
33.899.7134.6At3g14050820619RSH2 (RELA-SPOT HOMOLOG 2)F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
33.899.739.7At2g25190817057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFO.I.C.G.H.G.
33.399.743.4At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
33.299.7297.3At3g05500819715rubber elongation factor (REF) family proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
32.799.7116.8At5g24810832550ABC1 family proteinF:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;BOMFPAVO.I.C.G.H.G.
32.699.767.6At1g30040839883ATGA2OX2 (GIBBERELLIN 2-OXIDASE)Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.O.I.C.G.H.G.
32.399.761.6At2g01300814658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
32.399.722.4At1g77500844086unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;PMOFBVO.I.C.G.H.G.
32.299.783.8At1g66880843006serine/threonine protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
32.199.762.8At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAO.I.C.G.H.G.
31.799.777.8At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
31.699.7112.3At1g48320841252thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPMO.I.C.G.H.G.
31.499.7139.3At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
31.099.759.7At3g48090823964EDS1 (enhanced disease susceptibility 1)Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.O.I.C.G.H.G.
30.799.794.0At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
30.199.7124.0At4g23570828457SGT1AClosely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.O.I.C.G.H.G.
29.999.7165.5At1g13990837959unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
29.799.764.8At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
29.699.732.2At2g40340818627AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
29.199.7294.9At3g56400824807WRKY70member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.O.I.C.G.H.G.
29.199.7230.9At3g24500822041MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.O.I.C.G.H.G.
29.199.761.2At5g56340835734zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
29.099.730.3At1g33720840263CYP76C6member of CYP76CO.I.C.G.H.G.
28.899.7205.0At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayO.I.C.G.H.G.
28.799.776.0At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAO.I.C.G.H.G.
28.599.799.6At2g17220816227protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
28.199.7124.5At3g53230824489cell division cycle protein 48, putative / CDC48, putativeF:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAVO.I.C.G.H.G.
28.099.775.3At4g11890826796protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
27.699.732.3At1g61370842431S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
27.299.797.2At1g10340837573ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
26.899.7199.6At1g50740841496unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;MPBOFO.I.C.G.H.G.
26.799.77.7At5g52720835349metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
26.599.7140.9At1g22400838846UGT85A1F:in 6 functions;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.



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