Microarray experiments to specifically-expressed genes

GSM ID GSM244453
Assay name Arabidopsis AtMYB30-ox_2-4 h_ Xanthomonas inoculated_biological rep1_exp1
GSE experiment GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
177.5100.0156.6At3g28910822525MYB30 (MYB DOMAIN PROTEIN 30)transcription factor myb homologueO.I.C.G.H.G.
42.099.845.4At1g49000841322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
37.499.712.8At1g66570842975ATSUC7 (Sucrose-proton symporter 7)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity;P:transport, sucrose transport;C:integral to membrane, integral to plasma membrane, membrane;BMOPFAO.I.C.G.H.G.
37.099.7350.6At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
35.299.777.0At5g59080836025unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:chloroplast;PO.I.C.G.H.G.
33.199.718.2At4g38560830013-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFVO.I.C.G.H.G.
28.399.784.0At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBO.I.C.G.H.G.
24.399.691.9At1g10340837573ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
23.399.699.6At3g22060821768receptor protein kinase-relatedcontains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domainO.I.C.G.H.G.
23.199.6108.7At4g23570828457SGT1AClosely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.O.I.C.G.H.G.
22.499.6249.6At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
22.199.682.5At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).O.I.C.G.H.G.
21.999.687.2At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.O.I.C.G.H.G.
21.799.6105.1At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
21.499.6161.1At5g13200831159GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
21.499.675.0At5g25440832618protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVAO.I.C.G.H.G.
19.599.630.4At1g51920841620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.699.591.0At1g07000837210ATEXO70B2 (exocyst subunit EXO70 family protein B2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
18.699.542.0At3g21080821660ABC transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.099.590.7At1g14360837998UTR3 (UDP-GALACTOSE TRANSPORTER 3)F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPFO.I.C.G.H.G.
16.999.5105.3At2g17740816283DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POO.I.C.G.H.G.
16.399.565.7At2g35980818171YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.O.I.C.G.H.G.
16.399.526.2At4g23190828418CRK11 (CYSTEINE-RICH RLK11)Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
15.999.5301.9At3g12580820438HSP70 (heat shock protein 70)F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVAO.I.C.G.H.G.
15.999.537.0At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
15.899.5204.1At3g62600825434ATERDJ3BJ domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.O.I.C.G.H.G.
15.799.5284.6At5g13190831158-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
15.799.5255.1At5g44130834436FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMAO.I.C.G.H.G.
15.799.593.9At2g38290818409ATAMT2 (AMMONIUM TRANSPORTER 2)encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.O.I.C.G.H.G.
15.699.557.3At2g02810814811UTR1 (UDP-GALACTOSE TRANSPORTER 1)Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.O.I.C.G.H.G.
15.399.4169.3At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOO.I.C.G.H.G.
15.299.447.1At4g23210828420protein kinase family proteinEncodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.O.I.C.G.H.G.
15.299.414.3At4g11170826718disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:response to ozone, defense response;C:mitochondrion;PMBOFAO.I.C.G.H.G.
15.099.419.6At4g25110828614AtMC2 (metacaspase 2)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVAO.I.C.G.H.G.
14.899.4199.6At5g52640835341ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.O.I.C.G.H.G.
14.399.475.1At5g64510836572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
14.199.437.4At1g24140839026matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAFO.I.C.G.H.G.
14.099.447.2At4g23290828428protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
13.999.414.8At5g12930831133unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABFO.I.C.G.H.G.
13.799.4242.5At1g52200841650unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMOO.I.C.G.H.G.
12.999.3249.3At5g64120836533peroxidase, putativeencodes a cell wall bound peroxidase that is induced by hypo-osmolarityO.I.C.G.H.G.
12.799.3135.8At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayO.I.C.G.H.G.
12.799.349.2At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
12.799.312.6At4g00955827942-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
12.299.345.3At2g23840816916HNH endonuclease domain-containing proteinF:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPAO.I.C.G.H.G.
12.199.332.6At1g76360843968protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
12.099.326.2At1g26420839184FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
11.899.324.4At4g23200828419protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVAO.I.C.G.H.G.
11.799.359.1At5g02810831793PRR7 (PSEUDO-RESPONSE REGULATOR 7)PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels.O.I.C.G.H.G.
11.599.371.4At2g19190816436FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1)Receptor-like protein kinase. Involved in early defense signaling.O.I.C.G.H.G.
11.599.354.9At4g00330828125CRCK2high overall homology to CRCK1O.I.C.G.H.G.
11.399.35.8At2g11270815597citrate synthase-relatedF:transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;P:cellular carbohydrate metabolic process;C:cellular_component unknown;MPO.I.C.G.H.G.
11.199.238.5At1g51890841616leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.899.2125.4At4g2187082827626.5 kDa class P-related heat shock protein (HSP26.5-P)F:unknown;P:response to heat;C:cellular_component unknown;PBOFAO.I.C.G.H.G.
10.899.2109.9At4g38550830012-F:unknown;P:unknown;C:chloroplast;MFPOBVAO.I.C.G.H.G.
10.899.289.5At2g19310816448-F:molecular_function unknown;P:response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;PFOO.I.C.G.H.G.
10.899.227.2At5g61560836277protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVAO.I.C.G.H.G.
10.899.226.5At1g74360843777leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
10.799.2180.4At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAO.I.C.G.H.G.
10.799.240.1At5g64240836545AtMC3 (metacaspase 3)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPAO.I.C.G.H.G.
10.699.223.4At1g34180840317anac016 (Arabidopsis NAC domain containing protein 16)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
10.599.2261.0At5g61790836301calnexin 1 (CNX1)F:unfolded protein binding, calcium ion binding;P:protein folding;C:in 8 components;MOPFBVAO.I.C.G.H.G.
10.599.256.1At2g31800817737ankyrin protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.C.G.H.G.
10.599.233.0At2g201422745551transmembrane receptorF:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
10.599.225.7At1g78450844181SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:endomembrane system;OMPBAO.I.C.G.H.G.
10.399.294.2At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.O.I.C.G.H.G.
10.399.267.5At5g57220835828CYP81F2member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi.O.I.C.G.H.G.
10.399.234.2At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
10.399.223.1At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
10.299.2112.8At5g48570834913peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPAO.I.C.G.H.G.
10.299.220.9At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
10.199.276.0At3g59060825075PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.O.I.C.G.H.G.
10.099.263.9At1g22070838812TGA3Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.O.I.C.G.H.G.
10.099.212.2At5g15420831394unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPO.I.C.G.H.G.
9.999.1161.5At4g02920828139unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.999.1104.0At1g07350837246transformer serine/arginine-rich ribonucleoprotein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:unknown;MPFOBVAO.I.C.G.H.G.
9.899.167.3At1g57630842139disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
9.799.1218.5At5g56870835789BGAL4 (beta-galactosidase 4)F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOAO.I.C.G.H.G.
9.799.1177.5At1g67870843115glycine-rich proteinF:unknown;P:biological_process unknown;C:unknown;MOBPFAVO.I.C.G.H.G.
9.799.160.5At2g01180814646ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.O.I.C.G.H.G.
9.799.138.7At1g64400842748long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVO.I.C.G.H.G.
9.799.127.7At1g08890837410sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOAO.I.C.G.H.G.
9.699.191.7At4g13830827017J20 (DNAJ-LIKE 20)DnaJ-like protein (J20); nuclear geneO.I.C.G.H.G.
9.699.170.0At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.O.I.C.G.H.G.
9.599.110.6At3g47090823862leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
9.499.1168.4At1g19020838483unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
9.499.186.0At2g30600817610BTB/POZ domain-containing proteinF:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
9.499.118.9At1g51620841587protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
9.399.133.8At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAO.I.C.G.H.G.
9.299.1130.9At2g29670817517bindingF:binding;P:unknown;C:chloroplast;PBOAMO.I.C.G.H.G.
9.199.1160.9At5g55180835611glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
9.199.156.9At1g26380839180FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
9.199.114.7At3g61390825311U-box domain-containing proteinF:unknown;P:unknown;C:unknown;OMFPBAVO.I.C.G.H.G.
9.099.1350.2At4g12470826859protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFAO.I.C.G.H.G.
9.099.122.4At5g52900835367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
8.999.016.8At5g66850836819MAPKKK5member of MEKK subfamilyO.I.C.G.H.G.
8.899.0233.4At3g16530820901legume lectin family proteinLectin like protein whose expression is induced upon treatment with chitin oligomers.O.I.C.G.H.G.
8.899.024.4At5g67340836869armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:endomembrane system, ubiquitin ligase complex;PMOFBO.I.C.G.H.G.
8.799.043.3At1g21640838766NADK2Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.O.I.C.G.H.G.
8.799.042.4At2g18680816383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.



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