Microarray experiments to specifically-expressed genes

GSM ID GSM244446
Assay name Arabidopsis wild-type_2-4 h_ Xanthomonas inoculated_biological rep1_exp1
GSE experiment GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
47.499.848.2At1g49000841322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
40.699.882.6At5g59080836025unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:chloroplast;PO.I.C.G.H.G.
29.199.7311.1At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
25.499.6104.1At3g22060821768receptor protein kinase-relatedcontains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domainO.I.C.G.H.G.
23.299.689.8At1g10340837573ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
20.399.6290.0At5g44130834436FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMAO.I.C.G.H.G.
20.299.643.8At3g21080821660ABC transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.199.6286.1At1g52200841650unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMOO.I.C.G.H.G.
19.099.570.7At5g25440832618protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVAO.I.C.G.H.G.
18.199.593.5At1g14360837998UTR3 (UDP-GALACTOSE TRANSPORTER 3)F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPFO.I.C.G.H.G.
17.799.595.1At4g23570828457SGT1AClosely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.O.I.C.G.H.G.
17.099.520.9At4g25110828614AtMC2 (metacaspase 2)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVAO.I.C.G.H.G.
16.699.5282.4At5g64120836533peroxidase, putativeencodes a cell wall bound peroxidase that is induced by hypo-osmolarityO.I.C.G.H.G.
15.599.512.4At4g38560830013-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFVO.I.C.G.H.G.
15.399.449.3At4g23290828428protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
15.199.430.7At1g78450844181SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:endomembrane system;OMPBAO.I.C.G.H.G.
14.899.427.7At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
14.499.426.1At1g51920841620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.999.4196.2At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
13.999.4142.7At4g2187082827626.5 kDa class P-related heat shock protein (HSP26.5-P)F:unknown;P:response to heat;C:cellular_component unknown;PBOFAO.I.C.G.H.G.
13.999.478.6At1g07000837210ATEXO70B2 (exocyst subunit EXO70 family protein B2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
13.999.474.1At5g64510836572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.799.4190.5At3g62600825434ATERDJ3BJ domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.O.I.C.G.H.G.
13.799.478.0At2g19190816436FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1)Receptor-like protein kinase. Involved in early defense signaling.O.I.C.G.H.G.
13.599.492.4At1g72060843537serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
13.599.463.6At2g31800817737ankyrin protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.C.G.H.G.
13.599.414.2At5g15420831394unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPO.I.C.G.H.G.
13.499.422.6At1g51620841587protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
13.399.453.0At2g02810814811UTR1 (UDP-GALACTOSE TRANSPORTER 1)Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.O.I.C.G.H.G.
13.199.4177.4At1g19380838521unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.699.390.6At2g17740816283DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POO.I.C.G.H.G.
12.499.333.9At1g09420837465G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.O.I.C.G.H.G.
12.299.345.3At2g23840816916HNH endonuclease domain-containing proteinF:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPAO.I.C.G.H.G.
12.299.312.3At4g00955827942-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
12.099.322.6At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
11.999.382.4At3g59060825075PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.O.I.C.G.H.G.
11.899.3400.7At4g12470826859protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFAO.I.C.G.H.G.
11.499.394.9At2g30600817610BTB/POZ domain-containing proteinF:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
11.199.264.4At1g19610838548PDF1.4Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
11.199.229.5At1g08890837410sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOAO.I.C.G.H.G.
11.099.2172.1At5g52640835341ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.O.I.C.G.H.G.
10.999.2110.2At4g38550830012-F:unknown;P:unknown;C:chloroplast;MFPOBVAO.I.C.G.H.G.
10.799.2168.1At4g02920828139unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.499.29.0At4g18540827586unknown proteinF:unknown;P:biological_process unknown;C:unknown;FPBMO.I.C.G.H.G.
10.399.224.0At5g52900835367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.199.2240.8At3g12580820438HSP70 (heat shock protein 70)F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVAO.I.C.G.H.G.
10.199.2127.9At4g36670829820mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVO.I.C.G.H.G.
10.099.243.4At5g01540831722LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1)Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.O.I.C.G.H.G.
9.999.1220.3At5g56870835789BGAL4 (beta-galactosidase 4)F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOAO.I.C.G.H.G.
9.899.122.5At1g34180840317anac016 (Arabidopsis NAC domain containing protein 16)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.122.3At5g06570830545hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
9.799.192.3At4g13830827017J20 (DNAJ-LIKE 20)DnaJ-like protein (J20); nuclear geneO.I.C.G.H.G.
9.699.1134.0At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOO.I.C.G.H.G.
9.699.15.1At1g53080841742legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:plant-type cell wall;PBOO.I.C.G.H.G.
9.599.184.2At2g19310816448-F:molecular_function unknown;P:response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;PFOO.I.C.G.H.G.
9.499.1268.9At2g38870818471protease inhibitor, putativePredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
9.499.165.8At3g53180824484catalytic/ glutamate-ammonia ligaseF:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMPO.I.C.G.H.G.
9.499.149.6At4g00330828125CRCK2high overall homology to CRCK1O.I.C.G.H.G.
9.399.1364.0At1g76080843940CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).O.I.C.G.H.G.
9.299.149.6At3g13062820493-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
9.299.141.4At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
9.299.126.3At4g12300826839CYP706A4member of CYP706AO.I.C.G.H.G.
9.299.119.6At1g05300837029ZIP5member of Fe(II) transporter isolog familyO.I.C.G.H.G.
9.199.142.0At4g21120827860AAT1 (AMINO ACID TRANSPORTER 1)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.O.I.C.G.H.G.
8.999.0360.4At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
8.999.0122.0At2g31810817738acetolactate synthase small subunit, putativeF:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAPO.I.C.G.H.G.
8.899.0239.0At5g61790836301calnexin 1 (CNX1)F:unfolded protein binding, calcium ion binding;P:protein folding;C:in 8 components;MOPFBVAO.I.C.G.H.G.
8.899.081.9At1g58180842185carbonic anhydrase family protein / carbonate dehydratase family proteinF:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMAO.I.C.G.H.G.
8.899.051.3At5g02810831793PRR7 (PSEUDO-RESPONSE REGULATOR 7)PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels.O.I.C.G.H.G.
8.899.036.3At1g75100843847JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.O.I.C.G.H.G.
8.899.022.3At1g26420839184FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
8.799.0270.5At1g80920844432J8J8 mRNA, nuclear gene encoding plastid protein, completeO.I.C.G.H.G.
8.799.0259.2At3g01290821309band 7 family proteinF:unknown;P:N-terminal protein myristoylation;C:mitochondrion, plasma membrane, vacuole, membrane;BOMFPAVO.I.C.G.H.G.
8.799.070.1At2g38290818409ATAMT2 (AMMONIUM TRANSPORTER 2)encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.O.I.C.G.H.G.
8.799.036.2At5g64240836545AtMC3 (metacaspase 3)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPAO.I.C.G.H.G.
8.699.094.6At1g63800842683UBC5 (ubiquitin-conjugating enzyme 5)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.C.G.H.G.



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