CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM244446

Assay name Arabidopsis wild-type_2-4 h_ Xanthomonas inoculated_biological rep1_exp1

GSE experiment GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
47.4 99.8 48.2 At1g49000 841322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
40.6 99.8 82.6 At5g59080 836025 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P O.I. C.G. H.G.
29.1 99.7 311.1 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM O.I. C.G. H.G.
25.4 99.6 104.1 At3g22060 821768 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain O.I. C.G. H.G.
23.2 99.6 89.8 At1g10340 837573 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
20.3 99.6 290.0 At5g44130 834436 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMA O.I. C.G. H.G.
20.2 99.6 43.8 At3g21080 821660 ABC transporter-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.1 99.6 286.1 At1g52200 841650 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMO O.I. C.G. H.G.
19.0 99.5 70.7 At5g25440 832618 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVA O.I. C.G. H.G.
18.1 99.5 93.5 At1g14360 837998 UTR3 (UDP-GALACTOSE TRANSPORTER 3) F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPF O.I. C.G. H.G.
17.7 99.5 95.1 At4g23570 828457 SGT1A Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance. O.I. C.G. H.G.
17.0 99.5 20.9 At4g25110 828614 AtMC2 (metacaspase 2) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA O.I. C.G. H.G.
16.6 99.5 282.4 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity O.I. C.G. H.G.
15.5 99.5 12.4 At4g38560 830013 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV O.I. C.G. H.G.
15.3 99.4 49.3 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. C.G. H.G.
15.1 99.4 30.7 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.
14.8 99.4 27.7 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter O.I. C.G. H.G.
14.4 99.4 26.1 At1g51920 841620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.9 99.4 196.2 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
13.9 99.4 142.7 At4g21870 828276 26.5 kDa class P-related heat shock protein (HSP26.5-P) F:unknown;P:response to heat;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
13.9 99.4 78.6 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
13.9 99.4 74.1 At5g64510 836572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.7 99.4 190.5 At3g62600 825434 ATERDJ3B J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. O.I. C.G. H.G.
13.7 99.4 78.0 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. O.I. C.G. H.G.
13.5 99.4 92.4 At1g72060 843537 serine-type endopeptidase inhibitor F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P O.I. C.G. H.G.
13.5 99.4 63.6 At2g31800 817737 ankyrin protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA O.I. C.G. H.G.
13.5 99.4 14.2 At5g15420 831394 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OP O.I. C.G. H.G.
13.4 99.4 22.6 At1g51620 841587 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
13.3 99.4 53.0 At2g02810 814811 UTR1 (UDP-GALACTOSE TRANSPORTER 1) Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER. O.I. C.G. H.G.
13.1 99.4 177.4 At1g19380 838521 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.6 99.3 90.6 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
12.4 99.3 33.9 At1g09420 837465 G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4) Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. O.I. C.G. H.G.
12.2 99.3 45.3 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.
12.2 99.3 12.3 At4g00955 827942 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
12.0 99.3 22.6 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
11.9 99.3 82.4 At3g59060 825075 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B. O.I. C.G. H.G.
11.8 99.3 400.7 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA O.I. C.G. H.G.
11.4 99.3 94.9 At2g30600 817610 BTB/POZ domain-containing protein F:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
11.1 99.2 64.4 At1g19610 838548 PDF1.4 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
11.1 99.2 29.5 At1g08890 837410 sugar transporter family protein F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOA O.I. C.G. H.G.
11.0 99.2 172.1 At5g52640 835341 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. O.I. C.G. H.G.
10.9 99.2 110.2 At4g38550 830012 - F:unknown;P:unknown;C:chloroplast;MFPOBVA O.I. C.G. H.G.
10.7 99.2 168.1 At4g02920 828139 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.4 99.2 9.0 At4g18540 827586 unknown protein F:unknown;P:biological_process unknown;C:unknown;FPBM O.I. C.G. H.G.
10.3 99.2 24.0 At5g52900 835367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.1 99.2 240.8 At3g12580 820438 HSP70 (heat shock protein 70) F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
10.1 99.2 127.9 At4g36670 829820 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV O.I. C.G. H.G.
10.0 99.2 43.4 At5g01540 831722 LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. O.I. C.G. H.G.
9.9 99.1 220.3 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
9.8 99.1 22.5 At1g34180 840317 anac016 (Arabidopsis NAC domain containing protein 16) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
9.8 99.1 22.3 At5g06570 830545 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
9.7 99.1 92.3 At4g13830 827017 J20 (DNAJ-LIKE 20) DnaJ-like protein (J20); nuclear gene O.I. C.G. H.G.
9.6 99.1 134.0 At4g33050 829442 EDA39 (embryo sac development arrest 39) F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO O.I. C.G. H.G.
9.6 99.1 5.1 At1g53080 841742 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:plant-type cell wall;PBO O.I. C.G. H.G.
9.5 99.1 84.2 At2g19310 816448 - F:molecular_function unknown;P:response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;PFO O.I. C.G. H.G.
9.4 99.1 268.9 At2g38870 818471 protease inhibitor, putative Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
9.4 99.1 65.8 At3g53180 824484 catalytic/ glutamate-ammonia ligase F:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMP O.I. C.G. H.G.
9.4 99.1 49.6 At4g00330 828125 CRCK2 high overall homology to CRCK1 O.I. C.G. H.G.
9.3 99.1 364.0 At1g76080 843940 CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD) Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD). O.I. C.G. H.G.
9.2 99.1 49.6 At3g13062 820493 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
9.2 99.1 41.4 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
9.2 99.1 26.3 At4g12300 826839 CYP706A4 member of CYP706A O.I. C.G. H.G.
9.2 99.1 19.6 At1g05300 837029 ZIP5 member of Fe(II) transporter isolog family O.I. C.G. H.G.
9.1 99.1 42.0 At4g21120 827860 AAT1 (AMINO ACID TRANSPORTER 1) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. O.I. C.G. H.G.
8.9 99.0 360.4 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
8.9 99.0 122.0 At2g31810 817738 acetolactate synthase small subunit, putative F:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAP O.I. C.G. H.G.
8.8 99.0 239.0 At5g61790 836301 calnexin 1 (CNX1) F:unfolded protein binding, calcium ion binding;P:protein folding;C:in 8 components;MOPFBVA O.I. C.G. H.G.
8.8 99.0 81.9 At1g58180 842185 carbonic anhydrase family protein / carbonate dehydratase family protein F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA O.I. C.G. H.G.
8.8 99.0 51.3 At5g02810 831793 PRR7 (PSEUDO-RESPONSE REGULATOR 7) PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. O.I. C.G. H.G.
8.8 99.0 36.3 At1g75100 843847 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. O.I. C.G. H.G.
8.8 99.0 22.3 At1g26420 839184 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
8.7 99.0 270.5 At1g80920 844432 J8 J8 mRNA, nuclear gene encoding plastid protein, complete O.I. C.G. H.G.
8.7 99.0 259.2 At3g01290 821309 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:mitochondrion, plasma membrane, vacuole, membrane;BOMFPAV O.I. C.G. H.G.
8.7 99.0 70.1 At2g38290 818409 ATAMT2 (AMMONIUM TRANSPORTER 2) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively. O.I. C.G. H.G.
8.7 99.0 36.2 At5g64240 836545 AtMC3 (metacaspase 3) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPA O.I. C.G. H.G.
8.6 99.0 94.6 At1g63800 842683 UBC5 (ubiquitin-conjugating enzyme 5) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
47.4	99.8	48.2	At1g49000	841322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
40.6	99.8	82.6	At5g59080	836025	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P	O.I.	C.G.	H.G.
29.1	99.7	311.1	At2g43620	818964	chitinase, putative	F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM	O.I.	C.G.	H.G.
25.4	99.6	104.1	At3g22060	821768	receptor protein kinase-related	contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain	O.I.	C.G.	H.G.
23.2	99.6	89.8	At1g10340	837573	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
20.3	99.6	290.0	At5g44130	834436	FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)	F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMA	O.I.	C.G.	H.G.
20.2	99.6	43.8	At3g21080	821660	ABC transporter-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.1	99.6	286.1	At1g52200	841650	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMO	O.I.	C.G.	H.G.
19.0	99.5	70.7	At5g25440	832618	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVA	O.I.	C.G.	H.G.
18.1	99.5	93.5	At1g14360	837998	UTR3 (UDP-GALACTOSE TRANSPORTER 3)	F:pyrimidine nucleotide sugar transmembrane transporter activity;P:unknown;C:endomembrane system;MOPF	O.I.	C.G.	H.G.
17.7	99.5	95.1	At4g23570	828457	SGT1A	Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.	O.I.	C.G.	H.G.
17.0	99.5	20.9	At4g25110	828614	AtMC2 (metacaspase 2)	F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVA	O.I.	C.G.	H.G.
16.6	99.5	282.4	At5g64120	836533	peroxidase, putative	encodes a cell wall bound peroxidase that is induced by hypo-osmolarity	O.I.	C.G.	H.G.
15.5	99.5	12.4	At4g38560	830013	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV	O.I.	C.G.	H.G.
15.3	99.4	49.3	At4g23290	828428	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA	O.I.	C.G.	H.G.
15.1	99.4	30.7	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.
14.8	99.4	27.7	At4g27730	828887	OPT6 (OLIGOPEPTIDE TRANSPORTER 1)	oligopeptide transporter	O.I.	C.G.	H.G.
14.4	99.4	26.1	At1g51920	841620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.9	99.4	196.2	At4g14365	827080	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
13.9	99.4	142.7	At4g21870	828276	26.5 kDa class P-related heat shock protein (HSP26.5-P)	F:unknown;P:response to heat;C:cellular_component unknown;PBOFA	O.I.	C.G.	H.G.
13.9	99.4	78.6	At1g07000	837210	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
13.9	99.4	74.1	At5g64510	836572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.7	99.4	190.5	At3g62600	825434	ATERDJ3B	J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.	O.I.	C.G.	H.G.
13.7	99.4	78.0	At2g19190	816436	FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1)	Receptor-like protein kinase. Involved in early defense signaling.	O.I.	C.G.	H.G.
13.5	99.4	92.4	At1g72060	843537	serine-type endopeptidase inhibitor	F:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;P	O.I.	C.G.	H.G.
13.5	99.4	63.6	At2g31800	817737	ankyrin protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA	O.I.	C.G.	H.G.
13.5	99.4	14.2	At5g15420	831394	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OP	O.I.	C.G.	H.G.
13.4	99.4	22.6	At1g51620	841587	protein kinase family protein	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
13.3	99.4	53.0	At2g02810	814811	UTR1 (UDP-GALACTOSE TRANSPORTER 1)	Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.	O.I.	C.G.	H.G.
13.1	99.4	177.4	At1g19380	838521	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.6	99.3	90.6	At2g17740	816283	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
12.4	99.3	33.9	At1g09420	837465	G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)	Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.	O.I.	C.G.	H.G.
12.2	99.3	45.3	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.
12.2	99.3	12.3	At4g00955	827942	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
12.0	99.3	22.6	At2g29120	817460	ATGLR2.7	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
11.9	99.3	82.4	At3g59060	825075	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.	O.I.	C.G.	H.G.
11.8	99.3	400.7	At4g12470	826859	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA	O.I.	C.G.	H.G.
11.4	99.3	94.9	At2g30600	817610	BTB/POZ domain-containing protein	F:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
11.1	99.2	64.4	At1g19610	838548	PDF1.4	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
11.1	99.2	29.5	At1g08890	837410	sugar transporter family protein	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOA	O.I.	C.G.	H.G.
11.0	99.2	172.1	At5g52640	835341	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.	O.I.	C.G.	H.G.
10.9	99.2	110.2	At4g38550	830012	-	F:unknown;P:unknown;C:chloroplast;MFPOBVA	O.I.	C.G.	H.G.
10.7	99.2	168.1	At4g02920	828139	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.4	99.2	9.0	At4g18540	827586	unknown protein	F:unknown;P:biological_process unknown;C:unknown;FPBM	O.I.	C.G.	H.G.
10.3	99.2	24.0	At5g52900	835367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.1	99.2	240.8	At3g12580	820438	HSP70 (heat shock protein 70)	F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
10.1	99.2	127.9	At4g36670	829820	mannitol transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV	O.I.	C.G.	H.G.
10.0	99.2	43.4	At5g01540	831722	LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1)	Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.	O.I.	C.G.	H.G.
9.9	99.1	220.3	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
9.8	99.1	22.5	At1g34180	840317	anac016 (Arabidopsis NAC domain containing protein 16)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.8	99.1	22.3	At5g06570	830545	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
9.7	99.1	92.3	At4g13830	827017	J20 (DNAJ-LIKE 20)	DnaJ-like protein (J20); nuclear gene	O.I.	C.G.	H.G.
9.6	99.1	134.0	At4g33050	829442	EDA39 (embryo sac development arrest 39)	F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
9.6	99.1	5.1	At1g53080	841742	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:plant-type cell wall;PBO	O.I.	C.G.	H.G.
9.5	99.1	84.2	At2g19310	816448	-	F:molecular_function unknown;P:response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;PFO	O.I.	C.G.	H.G.
9.4	99.1	268.9	At2g38870	818471	protease inhibitor, putative	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
9.4	99.1	65.8	At3g53180	824484	catalytic/ glutamate-ammonia ligase	F:glutamate-ammonia ligase activity, catalytic activity;P:nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process;C:unknown;BOAFMP	O.I.	C.G.	H.G.
9.4	99.1	49.6	At4g00330	828125	CRCK2	high overall homology to CRCK1	O.I.	C.G.	H.G.
9.3	99.1	364.0	At1g76080	843940	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).	O.I.	C.G.	H.G.
9.2	99.1	49.6	At3g13062	820493	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
9.2	99.1	41.4	At1g02660	839544	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
9.2	99.1	26.3	At4g12300	826839	CYP706A4	member of CYP706A	O.I.	C.G.	H.G.
9.2	99.1	19.6	At1g05300	837029	ZIP5	member of Fe(II) transporter isolog family	O.I.	C.G.	H.G.
9.1	99.1	42.0	At4g21120	827860	AAT1 (AMINO ACID TRANSPORTER 1)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.	O.I.	C.G.	H.G.
8.9	99.0	360.4	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
8.9	99.0	122.0	At2g31810	817738	acetolactate synthase small subunit, putative	F:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAP	O.I.	C.G.	H.G.
8.8	99.0	239.0	At5g61790	836301	calnexin 1 (CNX1)	F:unfolded protein binding, calcium ion binding;P:protein folding;C:in 8 components;MOPFBVA	O.I.	C.G.	H.G.
8.8	99.0	81.9	At1g58180	842185	carbonic anhydrase family protein / carbonate dehydratase family protein	F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA	O.I.	C.G.	H.G.
8.8	99.0	51.3	At5g02810	831793	PRR7 (PSEUDO-RESPONSE REGULATOR 7)	PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels.	O.I.	C.G.	H.G.
8.8	99.0	36.3	At1g75100	843847	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	O.I.	C.G.	H.G.
8.8	99.0	22.3	At1g26420	839184	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
8.7	99.0	270.5	At1g80920	844432	J8	J8 mRNA, nuclear gene encoding plastid protein, complete	O.I.	C.G.	H.G.
8.7	99.0	259.2	At3g01290	821309	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:mitochondrion, plasma membrane, vacuole, membrane;BOMFPAV	O.I.	C.G.	H.G.
8.7	99.0	70.1	At2g38290	818409	ATAMT2 (AMMONIUM TRANSPORTER 2)	encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.	O.I.	C.G.	H.G.
8.7	99.0	36.2	At5g64240	836545	AtMC3 (metacaspase 3)	F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPA	O.I.	C.G.	H.G.
8.6	99.0	94.6	At1g63800	842683	UBC5 (ubiquitin-conjugating enzyme 5)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.

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GSM ID	GSM244446
Assay name	Arabidopsis wild-type_2-4 h_ Xanthomonas inoculated_biological rep1_exp1
GSE experiment	GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints

Microarray experiments to specifically-expressed genes

GSM ID GSM244446 Assay name Arabidopsis wild-type_2-4 h_ Xanthomonas inoculated_biological rep1_exp1 GSE experiment GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints

GSM ID GSM244446

Assay name Arabidopsis wild-type_2-4 h_ Xanthomonas inoculated_biological rep1_exp1

GSE experiment GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints