Microarray experiments to specifically-expressed genes

GSM ID GSM244442
Assay name Arabidopsis wild-type_T0 (not inoculated)_biological rep1_exp1
GSE experiment GSE9674: Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
228.5100.064.1At3g28320822460-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
201.9100.048.2At3g28310822458-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.299.747.1At1g08890837410sugar transporter family proteinF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOAO.I.C.G.H.G.
27.599.775.5At1g02300839576cathepsin B-like cysteine protease, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
19.699.6180.2At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
19.299.634.6At1g78450844181SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:endomembrane system;OMPBAO.I.C.G.H.G.
18.099.552.3At1g78070844142-F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFOO.I.C.G.H.G.
17.499.532.1At1g12710837826AtPP2-A12 (Phloem protein 2-A12)This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.O.I.C.G.H.G.
15.799.579.3At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
15.199.421.7At5g52910835368ATIM (TIMELESS)homolog of Drosophila timelessO.I.C.G.H.G.
14.799.476.6At1g20190838608ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
12.899.349.4At2g43010818903PIF4 (phytochrome interacting factor 4)Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.O.I.C.G.H.G.
12.899.345.0At5g27930832860protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVBO.I.C.G.H.G.
12.599.3304.2At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
12.499.3111.0At5g27280832786zinc finger (DNL type) family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPOO.I.C.G.H.G.
12.299.3133.2At5g62720836393integral membrane HPP family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFPO.I.C.G.H.G.
11.999.324.2At3g01490821136protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
11.799.359.1At5g02810831793PRR7 (PSEUDO-RESPONSE REGULATOR 7)PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels.O.I.C.G.H.G.
11.599.3410.5At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
11.599.3115.9At4g04340825754early-responsive to dehydration protein-related / ERD protein-relatedF:unknown;P:unknown;C:plasma membrane;FPMOBO.I.C.G.H.G. (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.O.I.C.G.H.G.
10.999.2216.2At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFO.I.C.G.H.G.
10.499.241.4At1g23080838916PIN7 (PIN-FORMED 7)Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.O.I.C.G.H.G. proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.099.2211.9At1g06460837158ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1)ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins.O.I.C.G.H.G. domain-containing protein / FHA domain-containing proteinF:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;BPOAMO.I.C.G.H.G. dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAO.I.C.G.H.G.
9.499.1102.1At4g04330825753unknown proteinF:unknown;P:unknown;C:unknown;BPOO.I.C.G.H.G.
9.399.1112.7At2g40610818656ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
9.399.170.9At1g08550837377NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1)Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complexO.I.C.G.H.G.
9.199.1287.3At2g15890816085MEE14 (maternal effect embryo arrest 14)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POO.I.C.G.H.G.
9.099.1179.2At1g10760837619SEX1 (STARCH EXCESS 1)Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.O.I.C.G.H.G.
8.999.038.7At2g23840816916HNH endonuclease domain-containing proteinF:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPAO.I.C.G.H.G.
8.899.023.4At2g41870818787remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.

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