CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM242964

Assay name Steroid day 7 (day7D2)

GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
299.4 100.0 203.7 At4g35190 829672 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
132.4 99.9 24.9 At2g23060 816836 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PAOBM O.I. C.G. H.G.
120.3 99.9 89.2 At1g69180 843249 CRC (CRABS CLAW) Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region. O.I. C.G. H.G.
113.3 99.9 69.3 At4g19240 827664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
113.3 99.9 36.7 At5g51870 835262 AGL71 (AGAMOUS-LIKE 71) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBA O.I. C.G. H.G.
107.6 99.9 66.0 At2g18550 816370 HB-2 (HOMEOBOX-2) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
98.7 99.9 30.1 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins O.I. C.G. H.G.
97.2 99.9 42.8 At5g24860 832555 FPF1 (FLOWERING PROMOTING FACTOR 1) encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice. O.I. C.G. H.G.
88.8 99.9 45.2 At4g04630 825795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
81.8 99.9 78.7 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. O.I. C.G. H.G.
78.3 99.9 56.1 At2g31160 817672 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
76.8 99.9 67.8 At1g11600 837704 CYP77B1 member of CYP77B O.I. C.G. H.G.
73.6 99.9 118.6 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 O.I. C.G. H.G.
70.9 99.9 36.7 At2g02540 814784 ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21) Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene. O.I. C.G. H.G.
69.5 99.9 151.9 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
68.3 99.9 107.7 At4g18960 827631 AG (AGAMOUS) Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs. O.I. C.G. H.G.
67.4 99.8 180.5 At3g54820 824647 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. C.G. H.G.
62.2 99.8 24.8 At1g13290 837889 DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development. O.I. C.G. H.G.
60.9 99.8 82.9 At4g30520 829175 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
60.4 99.8 87.9 At5g67110 836846 ALC (ALCATRAZ) encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce. O.I. C.G. H.G.
59.0 99.8 225.1 At5g57785 835887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
57.8 99.8 20.3 At3g13130 820501 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPFB O.I. C.G. H.G.
55.6 99.8 38.3 At1g28360 839732 ERF12 (ERF DOMAIN PROTEIN 12) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
55.0 99.8 43.0 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
54.3 99.8 264.1 At2g21130 816648 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAV O.I. C.G. H.G.
51.0 99.8 82.7 At3g22550 821826 senescence-associated protein-related F:molecular_function unknown;P:response to salt stress;C:unknown;P O.I. C.G. H.G.
51.0 99.8 21.5 At1g61930 842488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.0 99.8 157.2 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. C.G. H.G.
49.8 99.8 77.7 At5g48500 834906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
46.4 99.8 116.7 At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
44.8 99.8 30.8 At5g03840 831683 TFL1 (TERMINAL FLOWER 1) Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole. O.I. C.G. H.G.
44.1 99.8 15.1 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.0 99.8 34.6 At5g11550 831027 binding F:binding;P:biological_process unknown;C:chloroplast;PMFOBV O.I. C.G. H.G.
43.3 99.8 60.3 At2g33860 817956 ETT (ETTIN) ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF. O.I. C.G. H.G.
41.7 99.8 18.7 At3g17010 820957 transcriptional factor B3 family protein transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary. O.I. C.G. H.G.
40.8 99.8 48.7 At1g23000 838908 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFB O.I. C.G. H.G.
40.6 99.8 116.4 At4g08150 826364 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate. O.I. C.G. H.G.
39.8 99.8 128.6 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. O.I. C.G. H.G.
39.1 99.8 89.2 At1g62360 842534 STM (SHOOT MERISTEMLESS) Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. O.I. C.G. H.G.
39.1 99.8 22.3 At1g70510 843388 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems. O.I. C.G. H.G.
37.2 99.7 83.9 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
36.8 99.7 338.6 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
36.2 99.7 85.8 At5g65410 836666 HB25 (HOMEOBOX PROTEIN 25) Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family. O.I. C.G. H.G.
36.1 99.7 48.1 At1g14440 838006 AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
35.8 99.7 68.8 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
35.0 99.7 64.3 At1g02800 839385 ATCEL2 Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
34.9 99.7 430.1 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
34.6 99.7 108.0 At1g19850 838573 MP (MONOPTEROS) Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. O.I. C.G. H.G.
34.2 99.7 62.2 At5g02550 831052 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.3 99.7 29.6 At3g25620 822149 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV O.I. C.G. H.G.
33.1 99.7 37.2 At3g24450 822035 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:endomembrane system;POM O.I. C.G. H.G.
33.0 99.7 14.3 At5g20420 832164 CHR42 (chromatin remodeling 42) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV O.I. C.G. H.G.
32.4 99.7 63.9 At5g02030 831745 RPL (REPLUMLESS) Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP. O.I. C.G. H.G.
32.4 99.7 25.8 At2g35310 818098 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
32.2 99.7 103.2 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
31.6 99.7 90.6 At5g50790 835151 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
31.6 99.7 35.2 At5g62165 836337 AGL42 (AGAMOUS LIKE 42) Encodes a MADS box transcription factor. Expressed in quiescent center. O.I. C.G. H.G.
31.5 99.7 153.0 At4g38660 830022 thaumatin, putative F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV O.I. C.G. H.G.
31.4 99.7 30.0 At5g57130 835819 protein binding F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM O.I. C.G. H.G.
30.4 99.7 56.0 At5g47600 834810 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
30.0 99.7 14.7 At4g35900 829744 FD bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia. O.I. C.G. H.G.
29.3 99.7 20.8 At2g27990 817343 BLH8 (BEL1-LIKE HOMEODOMAIN 8) Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals. O.I. C.G. H.G.
29.1 99.7 88.1 At1g80050 844345 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. O.I. C.G. H.G.
28.6 99.7 7.2 At5g51860 835261 MADS-box protein (AGL72) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
28.3 99.7 7.1 At1g14687 838033 AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32) F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;P O.I. C.G. H.G.
28.2 99.7 36.7 At3g50630 824226 KRP2 (KIP-RELATED PROTEIN 2) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation. O.I. C.G. H.G.
27.7 99.7 23.3 At4g14200 827060 unknown protein F:unknown;P:biological_process unknown;C:unknown;MBOFPA O.I. C.G. H.G.
27.6 99.7 43.8 At4g19230 827663 CYP707A1 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy. O.I. C.G. H.G.
27.5 99.7 46.8 At3g18960 821429 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
27.2 99.7 73.0 At1g30330 839913 ARF6 (AUXIN RESPONSE FACTOR 6) Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. O.I. C.G. H.G.
26.9 99.7 42.1 At2g34650 818030 PID (PINOID) Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. O.I. C.G. H.G.
26.9 99.7 9.2 At3g15170 820748 CUC1 (CUP-SHAPED COTYLEDON1) Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. O.I. C.G. H.G.
26.8 99.7 45.1 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
26.5 99.7 110.6 At5g26850 832743 - F:unknown;P:biological_process unknown;C:chloroplast;MPFO O.I. C.G. H.G.
26.3 99.7 20.6 At1g32240 840116 KAN2 (KANADI 2) Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis. O.I. C.G. H.G.
26.2 99.7 308.7 At1g70160 843352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
26.1 99.7 116.6 At1g22160 838821 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
26.0 99.7 88.0 At5g44630 834491 terpene synthase/cyclase family protein Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries. O.I. C.G. H.G.
25.1 99.6 94.0 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. O.I. C.G. H.G.
24.9 99.6 75.8 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
24.7 99.6 44.8 At5g18040 831925 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
24.4 99.6 20.0 At3g24810 822079 ICK3 Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. O.I. C.G. H.G.
24.1 99.6 74.7 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. O.I. C.G. H.G.
24.0 99.6 51.8 At1g73590 843693 PIN1 (PIN-FORMED 1) Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. O.I. C.G. H.G.
23.9 99.6 66.0 At3g55110 824677 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
23.7 99.6 6.7 At1g47990 841217 ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4) Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
23.6 99.6 58.5 At4g21650 828252 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
23.4 99.6 53.7 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. O.I. C.G. H.G.
23.2 99.6 47.6 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
23.0 99.6 30.5 At1g14350 837997 FLP (FOUR LIPS) Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. O.I. C.G. H.G.
22.9 99.6 40.8 At1g60890 842381 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF O.I. C.G. H.G.
22.6 99.6 15.0 At2g17770 816286 ATBZIP27 Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT. O.I. C.G. H.G.
22.5 99.6 59.7 At5g27930 832860 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB O.I. C.G. H.G.
22.3 99.6 118.1 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
22.3 99.6 30.4 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
22.2 99.6 25.2 At1g75520 843888 SRS5 (SHI-RELATED SEQUENCE 5) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. O.I. C.G. H.G.
22.2 99.6 24.9 At2g03710 814898 SEP4 (SEPALLATA 4) This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. O.I. C.G. H.G.
22.1 99.6 52.4 At1g69690 843305 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOFB O.I. C.G. H.G.
22.0 99.6 9.8 At3g12460 820425 3'-5' exonuclease/ nucleic acid binding F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;PMFO O.I. C.G. H.G.
21.8 99.6 77.2 At1g19330 838515 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
299.4	100.0	203.7	At4g35190	829672	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
132.4	99.9	24.9	At2g23060	816836	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PAOBM	O.I.	C.G.	H.G.
120.3	99.9	89.2	At1g69180	843249	CRC (CRABS CLAW)	Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region.	O.I.	C.G.	H.G.
113.3	99.9	69.3	At4g19240	827664	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
113.3	99.9	36.7	At5g51870	835262	AGL71 (AGAMOUS-LIKE 71)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBA	O.I.	C.G.	H.G.
107.6	99.9	66.0	At2g18550	816370	HB-2 (HOMEOBOX-2)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
98.7	99.9	30.1	At4g31610	829288	REM1 (REPRODUCTIVE MERISTEM 1)	Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	O.I.	C.G.	H.G.
97.2	99.9	42.8	At5g24860	832555	FPF1 (FLOWERING PROMOTING FACTOR 1)	encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.	O.I.	C.G.	H.G.
88.8	99.9	45.2	At4g04630	825795	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
81.8	99.9	78.7	At3g61250	825297	AtMYB17 (myb domain protein 17)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
78.3	99.9	56.1	At2g31160	817672	LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
76.8	99.9	67.8	At1g11600	837704	CYP77B1	member of CYP77B	O.I.	C.G.	H.G.
73.6	99.9	118.6	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	O.I.	C.G.	H.G.
70.9	99.9	36.7	At2g02540	814784	ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21)	Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene.	O.I.	C.G.	H.G.
69.5	99.9	151.9	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
68.3	99.9	107.7	At4g18960	827631	AG (AGAMOUS)	Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	O.I.	C.G.	H.G.
67.4	99.8	180.5	At3g54820	824647	PIP2	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV	O.I.	C.G.	H.G.
62.2	99.8	24.8	At1g13290	837889	DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5)	Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development.	O.I.	C.G.	H.G.
60.9	99.8	82.9	At4g30520	829175	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
60.4	99.8	87.9	At5g67110	836846	ALC (ALCATRAZ)	encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.	O.I.	C.G.	H.G.
59.0	99.8	225.1	At5g57785	835887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
57.8	99.8	20.3	At3g13130	820501	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPFB	O.I.	C.G.	H.G.
55.6	99.8	38.3	At1g28360	839732	ERF12 (ERF DOMAIN PROTEIN 12)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
55.0	99.8	43.0	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
54.3	99.8	264.1	At2g21130	816648	peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAV	O.I.	C.G.	H.G.
51.0	99.8	82.7	At3g22550	821826	senescence-associated protein-related	F:molecular_function unknown;P:response to salt stress;C:unknown;P	O.I.	C.G.	H.G.
51.0	99.8	21.5	At1g61930	842488	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.0	99.8	157.2	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	C.G.	H.G.
49.8	99.8	77.7	At5g48500	834906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.4	99.8	116.7	At3g13510	820553	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
44.8	99.8	30.8	At5g03840	831683	TFL1 (TERMINAL FLOWER 1)	Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole.	O.I.	C.G.	H.G.
44.1	99.8	15.1	At1g01130	839359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.0	99.8	34.6	At5g11550	831027	binding	F:binding;P:biological_process unknown;C:chloroplast;PMFOBV	O.I.	C.G.	H.G.
43.3	99.8	60.3	At2g33860	817956	ETT (ETTIN)	ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.	O.I.	C.G.	H.G.
41.7	99.8	18.7	At3g17010	820957	transcriptional factor B3 family protein	transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.	O.I.	C.G.	H.G.
40.8	99.8	48.7	At1g23000	838908	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFB	O.I.	C.G.	H.G.
40.6	99.8	116.4	At4g08150	826364	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.	O.I.	C.G.	H.G.
39.8	99.8	128.6	At5g28640	832968	AN3 (ANGUSTIFOLIA 3)	Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	O.I.	C.G.	H.G.
39.1	99.8	89.2	At1g62360	842534	STM (SHOOT MERISTEMLESS)	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.	O.I.	C.G.	H.G.
39.1	99.8	22.3	At1g70510	843388	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.	O.I.	C.G.	H.G.
37.2	99.7	83.9	At1g53160	841749	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
36.8	99.7	338.6	At5g48480	834903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
36.2	99.7	85.8	At5g65410	836666	HB25 (HOMEOBOX PROTEIN 25)	Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.	O.I.	C.G.	H.G.
36.1	99.7	48.1	At1g14440	838006	AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
35.8	99.7	68.8	At4g34400	829590	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
35.0	99.7	64.3	At1g02800	839385	ATCEL2	Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
34.9	99.7	430.1	At4g29030	829024	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
34.6	99.7	108.0	At1g19850	838573	MP (MONOPTEROS)	Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.	O.I.	C.G.	H.G.
34.2	99.7	62.2	At5g02550	831052	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.3	99.7	29.6	At3g25620	822149	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV	O.I.	C.G.	H.G.
33.1	99.7	37.2	At3g24450	822035	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:endomembrane system;POM	O.I.	C.G.	H.G.
33.0	99.7	14.3	At5g20420	832164	CHR42 (chromatin remodeling 42)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV	O.I.	C.G.	H.G.
32.4	99.7	63.9	At5g02030	831745	RPL (REPLUMLESS)	Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.	O.I.	C.G.	H.G.
32.4	99.7	25.8	At2g35310	818098	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.2	99.7	103.2	At1g75240	843861	AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
31.6	99.7	90.6	At5g50790	835151	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
31.6	99.7	35.2	At5g62165	836337	AGL42 (AGAMOUS LIKE 42)	Encodes a MADS box transcription factor. Expressed in quiescent center.	O.I.	C.G.	H.G.
31.5	99.7	153.0	At4g38660	830022	thaumatin, putative	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOV	O.I.	C.G.	H.G.
31.4	99.7	30.0	At5g57130	835819	protein binding	F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM	O.I.	C.G.	H.G.
30.4	99.7	56.0	At5g47600	834810	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
30.0	99.7	14.7	At4g35900	829744	FD	bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.	O.I.	C.G.	H.G.
29.3	99.7	20.8	At2g27990	817343	BLH8 (BEL1-LIKE HOMEODOMAIN 8)	Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals.	O.I.	C.G.	H.G.
29.1	99.7	88.1	At1g80050	844345	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.	O.I.	C.G.	H.G.
28.6	99.7	7.2	At5g51860	835261	MADS-box protein (AGL72)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
28.3	99.7	7.1	At1g14687	838033	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;P	O.I.	C.G.	H.G.
28.2	99.7	36.7	At3g50630	824226	KRP2 (KIP-RELATED PROTEIN 2)	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.	O.I.	C.G.	H.G.
27.7	99.7	23.3	At4g14200	827060	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MBOFPA	O.I.	C.G.	H.G.
27.6	99.7	43.8	At4g19230	827663	CYP707A1	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.	O.I.	C.G.	H.G.
27.5	99.7	46.8	At3g18960	821429	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.2	99.7	73.0	At1g30330	839913	ARF6 (AUXIN RESPONSE FACTOR 6)	Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.	O.I.	C.G.	H.G.
26.9	99.7	42.1	At2g34650	818030	PID (PINOID)	Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.	O.I.	C.G.	H.G.
26.9	99.7	9.2	At3g15170	820748	CUC1 (CUP-SHAPED COTYLEDON1)	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.	O.I.	C.G.	H.G.
26.8	99.7	45.1	At3g06220	819796	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.5	99.7	110.6	At5g26850	832743	-	F:unknown;P:biological_process unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
26.3	99.7	20.6	At1g32240	840116	KAN2 (KANADI 2)	Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.	O.I.	C.G.	H.G.
26.2	99.7	308.7	At1g70160	843352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
26.1	99.7	116.6	At1g22160	838821	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
26.0	99.7	88.0	At5g44630	834491	terpene synthase/cyclase family protein	Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.	O.I.	C.G.	H.G.
25.1	99.6	94.0	At4g37750	829931	ANT (AINTEGUMENTA)	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.	O.I.	C.G.	H.G.
24.9	99.6	75.8	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
24.7	99.6	44.8	At5g18040	831925	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.4	99.6	20.0	At3g24810	822079	ICK3	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.	O.I.	C.G.	H.G.
24.1	99.6	74.7	At5g43810	834403	ZLL (ZWILLE)	Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.	O.I.	C.G.	H.G.
24.0	99.6	51.8	At1g73590	843693	PIN1 (PIN-FORMED 1)	Encodes an auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins.	O.I.	C.G.	H.G.
23.9	99.6	66.0	At3g55110	824677	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
23.7	99.6	6.7	At1g47990	841217	ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4)	Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
23.6	99.6	58.5	At4g21650	828252	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
23.4	99.6	53.7	At2g32765	817837	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.	O.I.	C.G.	H.G.
23.2	99.6	47.6	At3g02210	821245	COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
23.0	99.6	30.5	At1g14350	837997	FLP (FOUR LIPS)	Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88.	O.I.	C.G.	H.G.
22.9	99.6	40.8	At1g60890	842381	phosphatidylinositol-4-phosphate 5-kinase family protein	F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF	O.I.	C.G.	H.G.
22.6	99.6	15.0	At2g17770	816286	ATBZIP27	Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.	O.I.	C.G.	H.G.
22.5	99.6	59.7	At5g27930	832860	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB	O.I.	C.G.	H.G.
22.3	99.6	118.1	At2g33810	817948	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
22.3	99.6	30.4	At5g59000	836017	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
22.2	99.6	25.2	At1g75520	843888	SRS5 (SHI-RELATED SEQUENCE 5)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.	O.I.	C.G.	H.G.
22.2	99.6	24.9	At2g03710	814898	SEP4 (SEPALLATA 4)	This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.	O.I.	C.G.	H.G.
22.1	99.6	52.4	At1g69690	843305	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOFB	O.I.	C.G.	H.G.
22.0	99.6	9.8	At3g12460	820425	3'-5' exonuclease/ nucleic acid binding	F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;PMFO	O.I.	C.G.	H.G.
21.8	99.6	77.2	At1g19330	838515	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.

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GSM ID	GSM242964
Assay name	Steroid day 7 (day7D2)
GSE experiment	GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM242964 Assay name Steroid day 7 (day7D2) GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

GSM ID GSM242964

Assay name Steroid day 7 (day7D2)

GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis