CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM242958

Assay name Mock day 3 (day3E2)

GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
602.0 100.0 113.1 At5g03840 831683 TFL1 (TERMINAL FLOWER 1) Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole. O.I. C.G. H.G.
290.2 100.0 200.6 At4g35190 829672 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
238.4 100.0 41.2 At3g13130 820501 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPFB O.I. C.G. H.G.
231.7 100.0 52.5 At5g51870 835262 AGL71 (AGAMOUS-LIKE 71) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBA O.I. C.G. H.G.
229.0 100.0 115.5 At1g23000 838908 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFB O.I. C.G. H.G.
215.4 100.0 127.8 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. O.I. C.G. H.G.
215.2 100.0 44.5 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins O.I. C.G. H.G.
167.5 100.0 30.3 At2g06200 815176 AtGRF6 (GROWTH-REGULATING FACTOR 6) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower O.I. C.G. H.G.
163.8 99.9 177.0 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 O.I. C.G. H.G.
162.2 99.9 172.0 At3g55110 824677 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
161.6 99.9 143.8 At5g67110 836846 ALC (ALCATRAZ) encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce. O.I. C.G. H.G.
135.5 99.9 265.6 At1g22160 838821 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
126.5 99.9 404.1 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. O.I. C.G. H.G.
115.7 99.9 185.7 At5g44630 834491 terpene synthase/cyclase family protein Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries. O.I. C.G. H.G.
114.4 99.9 113.6 At4g30520 829175 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
104.0 99.9 64.9 At2g18550 816370 HB-2 (HOMEOBOX-2) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
93.6 99.9 58.8 At2g16270 816123 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA O.I. C.G. H.G.
93.4 99.9 27.4 At2g27220 817264 BLH5 (BELL1-like homeodomain 5) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
88.6 99.9 153.8 At1g80050 844345 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. O.I. C.G. H.G.
86.4 99.9 79.4 At1g60890 842381 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF O.I. C.G. H.G.
86.0 99.9 99.1 At4g13640 826998 UNE16 (unfertilized embryo sac 16) F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBM O.I. C.G. H.G.
78.0 99.9 38.5 At2g02540 814784 ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21) Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene. O.I. C.G. H.G.
77.5 99.9 47.7 At2g28085 817353 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
74.9 99.9 29.6 At3g58770 825046 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
74.0 99.9 519.0 At1g70160 843352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
73.8 99.9 152.6 At1g69700 843306 ATHVA22C Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
73.6 99.9 44.0 At3g25620 822149 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV O.I. C.G. H.G.
72.7 99.9 189.6 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. C.G. H.G.
70.4 99.9 40.3 At5g07800 830673 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
69.2 99.9 22.3 At3g20900 821639 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
66.3 99.8 112.5 At1g10640 837607 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA O.I. C.G. H.G.
64.9 99.8 146.8 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
61.0 99.8 34.5 At1g76420 843975 CUC3 (CUP SHAPED COTYLEDON3) Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac. O.I. C.G. H.G.
60.0 99.8 234.3 At5g67260 836861 CYCD3 Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.
59.3 99.8 117.1 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
59.3 99.8 31.8 At5g40280 834026 ERA1 (ENHANCED RESPONSE TO ABA 1) encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought. O.I. C.G. H.G.
55.7 99.8 46.7 At5g62165 836337 AGL42 (AGAMOUS LIKE 42) Encodes a MADS box transcription factor. Expressed in quiescent center. O.I. C.G. H.G.
51.8 99.8 9.7 At5g51860 835261 MADS-box protein (AGL72) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
50.8 99.8 82.3 At1g10180 837556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
48.7 99.8 68.9 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
48.2 99.8 17.2 At5g20420 832164 CHR42 (chromatin remodeling 42) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV O.I. C.G. H.G.
47.3 99.8 37.8 At3g14980 820727 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity;P:regulation of transcription, DNA-dependent, metabolic process;C:nucleus;MPFOBA O.I. C.G. H.G.
46.1 99.8 52.2 At1g53140 841748 dynamin family protein Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis. O.I. C.G. H.G.
44.4 99.8 38.6 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
43.7 99.8 292.4 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
43.3 99.8 90.5 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
43.0 99.8 60.1 At5g58600 835974 PMR5 (POWDERY MILDEW RESISTANT 5) Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica. O.I. C.G. H.G.
41.3 99.8 74.7 At1g52310 841661 protein kinase family protein / C-type lectin domain-containing protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
41.1 99.8 44.6 At5g12440 831119 nucleic acid binding / nucleotide binding / zinc ion binding F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
40.0 99.8 41.0 At4g16447 827342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.9 99.8 36.6 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
39.5 99.8 89.6 At1g62360 842534 STM (SHOOT MERISTEMLESS) Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. O.I. C.G. H.G.
39.2 99.8 107.3 At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
38.7 99.8 28.0 At1g26260 839167 CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1. O.I. C.G. H.G.
37.6 99.7 64.1 At2g22420 816773 peroxidase 17 (PER17) (P17) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
37.3 99.7 20.8 At3g24340 822023 chr40 (chromatin remodeling 40) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA O.I. C.G. H.G.
34.5 99.7 30.9 At4g01730 826911 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP O.I. C.G. H.G.
33.9 99.7 46.6 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
33.4 99.7 66.5 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
33.2 99.7 82.6 At1g78170 844153 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.0 99.7 310.5 At5g65730 836702 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO O.I. C.G. H.G.
32.6 99.7 37.2 At5g67270 836862 ATEB1C (microtubule end binding protein 1) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis. O.I. C.G. H.G.
32.6 99.7 27.1 At4g35620 829714 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB O.I. C.G. H.G.
32.5 99.7 50.0 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB O.I. C.G. H.G.
32.4 99.7 122.3 At5g26850 832743 - F:unknown;P:biological_process unknown;C:chloroplast;MPFO O.I. C.G. H.G.
31.9 99.7 51.3 At3g62800 825455 DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4) Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression. O.I. C.G. H.G.
31.6 99.7 29.7 At2g03710 814898 SEP4 (SEPALLATA 4) This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. O.I. C.G. H.G.
31.3 99.7 26.8 At3g20070 821546 TTN9 (TITAN9) Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information. O.I. C.G. H.G.
30.9 99.7 30.1 At3g21600 821714 senescence/dehydration-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PMF O.I. C.G. H.G.
30.8 99.7 90.7 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.
30.7 99.7 131.9 At4g23800 828480 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
30.7 99.7 9.8 At3g15170 820748 CUC1 (CUP-SHAPED COTYLEDON1) Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. O.I. C.G. H.G.
29.9 99.7 43.7 At2g41890 818789 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein F:sugar binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV O.I. C.G. H.G.
29.8 99.7 37.1 At3g25560 822143 NIK2 (NSP-INTERACTING KINASE 2) F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
29.7 99.7 25.8 At1g16070 838177 AtTLP8 (TUBBY LIKE PROTEIN 8) Member of TLP family O.I. C.G. H.G.
29.7 99.7 17.8 At4g21270 827876 ATK1 (ARABIDOPSIS THALIANA KINESIN 1) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. O.I. C.G. H.G.
29.5 99.7 22.8 At2g19930 816512 RNA-dependent RNA polymerase family protein F:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMO O.I. C.G. H.G.
29.3 99.7 82.4 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. O.I. C.G. H.G.
29.3 99.7 79.1 At5g51140 835188 pseudouridine synthase family protein F:pseudouridine synthase activity;P:pseudouridine synthesis;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
28.6 99.7 52.0 At4g14770 827132 TCX2 (TESMIN/TSO1-LIKE CXC 2) F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFB O.I. C.G. H.G.
28.5 99.7 143.6 At5g03610 831778 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
28.5 99.7 32.8 At1g67720 843097 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein kinase activity, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
28.4 99.7 11.0 At3g26050 822202 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPV O.I. C.G. H.G.
27.8 99.7 60.7 At3g22780 821849 TSO1 (CHINESE FOR 'UGLY') putative DNA binding protein (tso1) mRNA, tso1-3 allele, O.I. C.G. H.G.
27.2 99.7 80.0 At3g07410 819929 AtRABA5b (Arabidopsis Rab GTPase homolog A5b) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. C.G. H.G.
27.1 99.7 53.8 At1g05710 837078 ethylene-responsive protein, putative F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P O.I. C.G. H.G.
26.6 99.7 110.5 At5g08100 830704 L-asparaginase / L-asparagine amidohydrolase F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
26.5 99.7 58.9 At3g22520 821823 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPA O.I. C.G. H.G.
26.3 99.7 94.3 At5g14640 831316 SK13 (SHAGGY-LIKE KINASE 13) F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MPOFBVA O.I. C.G. H.G.
26.1 99.7 99.2 At4g02150 827472 MOS6 (MODIFIER OF SNC1, 6) Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. C.G. H.G.
26.0 99.7 39.3 At5g48820 834940 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. O.I. C.G. H.G.
25.9 99.7 60.2 At5g41760 834180 nucleotide-sugar transporter family protein F:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPF O.I. C.G. H.G.
25.7 99.7 32.1 At2g31160 817672 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
25.5 99.7 24.1 At3g13190 820509 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
25.4 99.6 20.3 At2g01940 814725 nucleic acid binding / transcription factor/ zinc ion binding May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. O.I. C.G. H.G.
25.4 99.6 13.3 At3g09910 820149 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) F:GTP binding, transcription factor binding, ATP binding;P:protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent;C:endomembrane system, intracellular;MOFPBVA O.I. C.G. H.G.
25.2 99.6 47.0 At5g56590 835760 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PFOB O.I. C.G. H.G.
24.7 99.6 38.0 At1g16780 838249 vacuolar-type H+-translocating inorganic pyrophosphatase, putative F:inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity;P:proton transport;C:vacuole;OBPAM O.I. C.G. H.G.
24.7 99.6 29.8 At5g41870 834192 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
24.6 99.6 121.2 At2g27040 817246 AGO4 (ARGONAUTE 4) AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
602.0	100.0	113.1	At5g03840	831683	TFL1 (TERMINAL FLOWER 1)	Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole.	O.I.	C.G.	H.G.
290.2	100.0	200.6	At4g35190	829672	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
238.4	100.0	41.2	At3g13130	820501	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPFB	O.I.	C.G.	H.G.
231.7	100.0	52.5	At5g51870	835262	AGL71 (AGAMOUS-LIKE 71)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBA	O.I.	C.G.	H.G.
229.0	100.0	115.5	At1g23000	838908	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFB	O.I.	C.G.	H.G.
215.4	100.0	127.8	At3g61250	825297	AtMYB17 (myb domain protein 17)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
215.2	100.0	44.5	At4g31610	829288	REM1 (REPRODUCTIVE MERISTEM 1)	Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	O.I.	C.G.	H.G.
167.5	100.0	30.3	At2g06200	815176	AtGRF6 (GROWTH-REGULATING FACTOR 6)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower	O.I.	C.G.	H.G.
163.8	99.9	177.0	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	O.I.	C.G.	H.G.
162.2	99.9	172.0	At3g55110	824677	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
161.6	99.9	143.8	At5g67110	836846	ALC (ALCATRAZ)	encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.	O.I.	C.G.	H.G.
135.5	99.9	265.6	At1g22160	838821	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
126.5	99.9	404.1	At2g26330	817173	ER (ERECTA)	Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.	O.I.	C.G.	H.G.
115.7	99.9	185.7	At5g44630	834491	terpene synthase/cyclase family protein	Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.	O.I.	C.G.	H.G.
114.4	99.9	113.6	At4g30520	829175	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
104.0	99.9	64.9	At2g18550	816370	HB-2 (HOMEOBOX-2)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
93.6	99.9	58.8	At2g16270	816123	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.
93.4	99.9	27.4	At2g27220	817264	BLH5 (BELL1-like homeodomain 5)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
88.6	99.9	153.8	At1g80050	844345	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.	O.I.	C.G.	H.G.
86.4	99.9	79.4	At1g60890	842381	phosphatidylinositol-4-phosphate 5-kinase family protein	F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF	O.I.	C.G.	H.G.
86.0	99.9	99.1	At4g13640	826998	UNE16 (unfertilized embryo sac 16)	F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBM	O.I.	C.G.	H.G.
78.0	99.9	38.5	At2g02540	814784	ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21)	Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene.	O.I.	C.G.	H.G.
77.5	99.9	47.7	At2g28085	817353	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
74.9	99.9	29.6	At3g58770	825046	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
74.0	99.9	519.0	At1g70160	843352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
73.8	99.9	152.6	At1g69700	843306	ATHVA22C	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
73.6	99.9	44.0	At3g25620	822149	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV	O.I.	C.G.	H.G.
72.7	99.9	189.6	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	C.G.	H.G.
70.4	99.9	40.3	At5g07800	830673	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
69.2	99.9	22.3	At3g20900	821639	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
66.3	99.8	112.5	At1g10640	837607	polygalacturonase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA	O.I.	C.G.	H.G.
64.9	99.8	146.8	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
61.0	99.8	34.5	At1g76420	843975	CUC3 (CUP SHAPED COTYLEDON3)	Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.	O.I.	C.G.	H.G.
60.0	99.8	234.3	At5g67260	836861	CYCD3	Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.
59.3	99.8	117.1	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
59.3	99.8	31.8	At5g40280	834026	ERA1 (ENHANCED RESPONSE TO ABA 1)	encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.	O.I.	C.G.	H.G.
55.7	99.8	46.7	At5g62165	836337	AGL42 (AGAMOUS LIKE 42)	Encodes a MADS box transcription factor. Expressed in quiescent center.	O.I.	C.G.	H.G.
51.8	99.8	9.7	At5g51860	835261	MADS-box protein (AGL72)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
50.8	99.8	82.3	At1g10180	837556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
48.7	99.8	68.9	At3g02210	821245	COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
48.2	99.8	17.2	At5g20420	832164	CHR42 (chromatin remodeling 42)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV	O.I.	C.G.	H.G.
47.3	99.8	37.8	At3g14980	820727	PHD finger transcription factor, putative	F:protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity;P:regulation of transcription, DNA-dependent, metabolic process;C:nucleus;MPFOBA	O.I.	C.G.	H.G.
46.1	99.8	52.2	At1g53140	841748	dynamin family protein	Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.	O.I.	C.G.	H.G.
44.4	99.8	38.6	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
43.7	99.8	292.4	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
43.3	99.8	90.5	At1g53160	841749	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
43.0	99.8	60.1	At5g58600	835974	PMR5 (POWDERY MILDEW RESISTANT 5)	Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica.	O.I.	C.G.	H.G.
41.3	99.8	74.7	At1g52310	841661	protein kinase family protein / C-type lectin domain-containing protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
41.1	99.8	44.6	At5g12440	831119	nucleic acid binding / nucleotide binding / zinc ion binding	F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
40.0	99.8	41.0	At4g16447	827342	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.9	99.8	36.6	At1g67040	843024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
39.5	99.8	89.6	At1g62360	842534	STM (SHOOT MERISTEMLESS)	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.	O.I.	C.G.	H.G.
39.2	99.8	107.3	At3g13510	820553	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
38.7	99.8	28.0	At1g26260	839167	CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)	Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	O.I.	C.G.	H.G.
37.6	99.7	64.1	At2g22420	816773	peroxidase 17 (PER17) (P17)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
37.3	99.7	20.8	At3g24340	822023	chr40 (chromatin remodeling 40)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA	O.I.	C.G.	H.G.
34.5	99.7	30.9	At4g01730	826911	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP	O.I.	C.G.	H.G.
33.9	99.7	46.6	At5g53660	835447	AtGRF7 (GROWTH-REGULATING FACTOR 7)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
33.4	99.7	66.5	At4g34400	829590	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
33.2	99.7	82.6	At1g78170	844153	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.0	99.7	310.5	At5g65730	836702	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:response to water deprivation;C:endomembrane system, cell wall, apoplast;PFBO	O.I.	C.G.	H.G.
32.6	99.7	37.2	At5g67270	836862	ATEB1C (microtubule end binding protein 1)	encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.	O.I.	C.G.	H.G.
32.6	99.7	27.1	At4g35620	829714	CYCB2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB	O.I.	C.G.	H.G.
32.5	99.7	50.0	At2g39830	818570	DAR2 (DA1-RELATED PROTEIN 2)	F:zinc ion binding;P:unknown;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
32.4	99.7	122.3	At5g26850	832743	-	F:unknown;P:biological_process unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
31.9	99.7	51.3	At3g62800	825455	DRB4 (DOUBLE-STRANDED-RNA-BINDING PROTEIN 4)	Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.	O.I.	C.G.	H.G.
31.6	99.7	29.7	At2g03710	814898	SEP4 (SEPALLATA 4)	This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.	O.I.	C.G.	H.G.
31.3	99.7	26.8	At3g20070	821546	TTN9 (TITAN9)	Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.	O.I.	C.G.	H.G.
30.9	99.7	30.1	At3g21600	821714	senescence/dehydration-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMF	O.I.	C.G.	H.G.
30.8	99.7	90.7	At3g50070	824169	CYCD3	Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.
30.7	99.7	131.9	At4g23800	828480	high mobility group (HMG1/2) family protein	F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
30.7	99.7	9.8	At3g15170	820748	CUC1 (CUP-SHAPED COTYLEDON1)	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.	O.I.	C.G.	H.G.
29.9	99.7	43.7	At2g41890	818789	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein	F:sugar binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
29.8	99.7	37.1	At3g25560	822143	NIK2 (NSP-INTERACTING KINASE 2)	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
29.7	99.7	25.8	At1g16070	838177	AtTLP8 (TUBBY LIKE PROTEIN 8)	Member of TLP family	O.I.	C.G.	H.G.
29.7	99.7	17.8	At4g21270	827876	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.	O.I.	C.G.	H.G.
29.5	99.7	22.8	At2g19930	816512	RNA-dependent RNA polymerase family protein	F:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMO	O.I.	C.G.	H.G.
29.3	99.7	82.4	At5g43810	834403	ZLL (ZWILLE)	Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.	O.I.	C.G.	H.G.
29.3	99.7	79.1	At5g51140	835188	pseudouridine synthase family protein	F:pseudouridine synthase activity;P:pseudouridine synthesis;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
28.6	99.7	52.0	At4g14770	827132	TCX2 (TESMIN/TSO1-LIKE CXC 2)	F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFB	O.I.	C.G.	H.G.
28.5	99.7	143.6	At5g03610	831778	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
28.5	99.7	32.8	At1g67720	843097	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein kinase activity, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
28.4	99.7	11.0	At3g26050	822202	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPV	O.I.	C.G.	H.G.
27.8	99.7	60.7	At3g22780	821849	TSO1 (CHINESE FOR 'UGLY')	putative DNA binding protein (tso1) mRNA, tso1-3 allele,	O.I.	C.G.	H.G.
27.2	99.7	80.0	At3g07410	819929	AtRABA5b (Arabidopsis Rab GTPase homolog A5b)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
27.1	99.7	53.8	At1g05710	837078	ethylene-responsive protein, putative	F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
26.6	99.7	110.5	At5g08100	830704	L-asparaginase / L-asparagine amidohydrolase	F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
26.5	99.7	58.9	At3g22520	821823	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPA	O.I.	C.G.	H.G.
26.3	99.7	94.3	At5g14640	831316	SK13 (SHAGGY-LIKE KINASE 13)	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MPOFBVA	O.I.	C.G.	H.G.
26.1	99.7	99.2	At4g02150	827472	MOS6 (MODIFIER OF SNC1, 6)	Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	C.G.	H.G.
26.0	99.7	39.3	At5g48820	834940	ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.	O.I.	C.G.	H.G.
25.9	99.7	60.2	At5g41760	834180	nucleotide-sugar transporter family protein	F:nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:endomembrane system, integral to membrane, Golgi membrane;MOPF	O.I.	C.G.	H.G.
25.7	99.7	32.1	At2g31160	817672	LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
25.5	99.7	24.1	At3g13190	820509	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
25.4	99.6	20.3	At2g01940	814725	nucleic acid binding / transcription factor/ zinc ion binding	May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.	O.I.	C.G.	H.G.
25.4	99.6	13.3	At3g09910	820149	ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B)	F:GTP binding, transcription factor binding, ATP binding;P:protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent;C:endomembrane system, intracellular;MOFPBVA	O.I.	C.G.	H.G.
25.2	99.6	47.0	At5g56590	835760	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PFOB	O.I.	C.G.	H.G.
24.7	99.6	38.0	At1g16780	838249	vacuolar-type H+-translocating inorganic pyrophosphatase, putative	F:inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity;P:proton transport;C:vacuole;OBPAM	O.I.	C.G.	H.G.
24.7	99.6	29.8	At5g41870	834192	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
24.6	99.6	121.2	At2g27040	817246	AGO4 (ARGONAUTE 4)	AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.	O.I.	C.G.	H.G.

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GSM ID	GSM242958
Assay name	Mock day 3 (day3E2)
GSE experiment	GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM242958 Assay name Mock day 3 (day3E2) GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

GSM ID GSM242958

Assay name Mock day 3 (day3E2)

GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis