CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM242956

Assay name Steroid day 1 (day1D2)

GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
332.6 100.0 84.1 At5g03840 831683 TFL1 (TERMINAL FLOWER 1) Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole. O.I. C.G. H.G.
328.6 100.0 213.4 At4g35190 829672 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM O.I. C.G. H.G.
320.2 100.0 202.4 At5g67110 836846 ALC (ALCATRAZ) encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce. O.I. C.G. H.G.
284.8 100.0 128.9 At1g23000 838908 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFB O.I. C.G. H.G.
244.7 100.0 47.5 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins O.I. C.G. H.G.
235.6 100.0 133.6 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. O.I. C.G. H.G.
199.1 100.0 48.7 At5g51870 835262 AGL71 (AGAMOUS-LIKE 71) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBA O.I. C.G. H.G.
142.2 99.9 27.9 At2g06200 815176 AtGRF6 (GROWTH-REGULATING FACTOR 6) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower O.I. C.G. H.G.
128.2 99.9 185.1 At1g80050 844345 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. O.I. C.G. H.G.
125.9 99.9 155.1 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 O.I. C.G. H.G.
117.1 99.9 68.8 At2g18550 816370 HB-2 (HOMEOBOX-2) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
106.9 99.9 178.5 At5g44630 834491 terpene synthase/cyclase family protein Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries. O.I. C.G. H.G.
93.9 99.9 27.5 At2g27220 817264 BLH5 (BELL1-like homeodomain 5) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
92.7 99.9 345.9 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. O.I. C.G. H.G.
89.6 99.9 127.9 At3g55110 824677 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
81.1 99.9 205.5 At1g22160 838821 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
79.8 99.9 23.8 At3g13130 820501 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPFB O.I. C.G. H.G.
78.2 99.9 35.6 At2g01940 814725 nucleic acid binding / transcription factor/ zinc ion binding May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. O.I. C.G. H.G.
77.2 99.9 93.3 At4g30520 829175 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
74.7 99.9 157.5 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
71.6 99.9 83.6 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
71.5 99.9 40.6 At5g07800 830673 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
69.1 99.9 501.6 At1g70160 843352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
66.9 99.8 51.2 At5g62165 836337 AGL42 (AGAMOUS LIKE 42) Encodes a MADS box transcription factor. Expressed in quiescent center. O.I. C.G. H.G.
64.7 99.8 35.1 At2g02540 814784 ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21) Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene. O.I. C.G. H.G.
64.3 99.8 92.6 At1g10180 837556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
64.1 99.8 142.2 At1g69700 843306 ATHVA22C Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
62.0 99.8 35.4 At1g26260 839167 CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1. O.I. C.G. H.G.
60.8 99.8 5.3 At5g50500 835118 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
60.6 99.8 235.6 At5g67260 836861 CYCD3 Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.
59.3 99.8 19.1 At5g20420 832164 CHR42 (chromatin remodeling 42) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV O.I. C.G. H.G.
58.5 99.8 17.5 At2g39680 - - O.I. C.G. H.G.
56.9 99.8 41.4 At3g14980 820727 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity;P:regulation of transcription, DNA-dependent, metabolic process;C:nucleus;MPFOBA O.I. C.G. H.G.
56.5 99.8 11.5 At5g32460 3771028 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown O.I. C.G. H.G.
55.6 99.8 68.4 At5g58600 835974 PMR5 (POWDERY MILDEW RESISTANT 5) Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica. O.I. C.G. H.G.
55.3 99.8 165.3 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. C.G. H.G.
53.9 99.8 44.6 At2g16270 816123 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA O.I. C.G. H.G.
52.5 99.8 77.4 At4g13640 826998 UNE16 (unfertilized embryo sac 16) F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBM O.I. C.G. H.G.
52.3 99.8 46.9 At4g16447 827342 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.9 99.8 31.5 At1g76420 843975 CUC3 (CUP SHAPED COTYLEDON3) Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac. O.I. C.G. H.G.
46.7 99.8 12.1 At3g15170 820748 CUC1 (CUP-SHAPED COTYLEDON1) Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. O.I. C.G. H.G.
46.4 99.8 58.2 At1g60890 842381 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF O.I. C.G. H.G.
45.9 99.8 24.9 At5g40210 834019 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM O.I. C.G. H.G.
44.0 99.8 41.1 At1g69600 843296 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid. O.I. C.G. H.G.
43.7 99.8 22.5 At3g24340 822023 chr40 (chromatin remodeling 40) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA O.I. C.G. H.G.
41.8 99.8 37.5 At5g07180 830609 ERL2 (ERECTA-LIKE 2) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments. O.I. C.G. H.G.
41.8 99.8 26.7 At5g40280 834026 ERA1 (ENHANCED RESPONSE TO ABA 1) encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought. O.I. C.G. H.G.
41.5 99.8 98.0 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
40.8 99.8 66.0 At1g05710 837078 ethylene-responsive protein, putative F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P O.I. C.G. H.G.
40.6 99.8 34.5 At2g28085 817353 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
39.6 99.8 11.8 At1g26530 839193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
39.0 99.8 12.9 At3g26050 822202 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPV O.I. C.G. H.G.
38.7 99.8 21.0 At2g45870 819195 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BFPO O.I. C.G. H.G.
38.6 99.8 49.7 At2g41890 818789 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein F:sugar binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV O.I. C.G. H.G.
38.3 99.8 29.5 At3g13190 820509 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
37.3 99.7 32.9 At5g18770 831995 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
37.2 99.7 50.3 At5g13290 831170 CRN (CORYNE) Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels. O.I. C.G. H.G.
37.1 99.7 99.6 At3g50070 824169 CYCD3 Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.
37.0 99.7 92.5 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. O.I. C.G. H.G.
37.0 99.7 27.3 At4g24790 828581 ATP binding / DNA binding / DNA-directed DNA polymerase F:DNA binding, DNA-directed DNA polymerase activity, ATP binding;P:DNA replication;C:DNA polymerase III complex;BOFMAPV O.I. C.G. H.G.
36.6 99.7 83.1 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
36.5 99.7 10.8 At1g80100 844350 AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6) AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
35.9 99.7 41.1 At5g62410 836362 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) SMC2-1 (SMC2) O.I. C.G. H.G.
35.8 99.7 96.1 At5g23610 832427 - F:unknown;P:biological_process unknown;C:unknown;POBFAM O.I. C.G. H.G.
35.8 99.7 62.5 At2g22420 816773 peroxidase 17 (PER17) (P17) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
35.6 99.7 25.9 At3g43920 823508 ribonuclease III family protein Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation. O.I. C.G. H.G.
35.2 99.7 22.4 At5g65120 836636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
35.1 99.7 37.6 At2g31160 817672 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
34.8 99.7 15.8 At3g20900 821639 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
34.1 99.7 66.8 At3g22520 821823 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPA O.I. C.G. H.G.
33.5 99.7 43.7 At2g28130 817359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
33.5 99.7 20.3 At2g21800 816716 ATEME1A (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A) Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes. O.I. C.G. H.G.
33.3 99.7 37.7 At2g32590 817819 - F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPV O.I. C.G. H.G.
33.3 99.7 30.4 At4g01730 826911 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP O.I. C.G. H.G.
32.9 99.7 30.2 At2g18850 816400 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
32.4 99.7 65.4 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
32.3 99.7 78.5 At1g10640 837607 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA O.I. C.G. H.G.
32.1 99.7 55.0 At5g56790 835781 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
32.0 99.7 80.6 At1g62360 842534 STM (SHOOT MERISTEMLESS) Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. O.I. C.G. H.G.
31.7 99.7 121.1 At5g26850 832743 - F:unknown;P:biological_process unknown;C:chloroplast;MPFO O.I. C.G. H.G.
31.6 99.7 73.8 At5g08580 830759 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPOFB O.I. C.G. H.G.
31.4 99.7 24.4 At5g01200 831676 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
31.3 99.7 23.9 At2g40200 818611 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB O.I. C.G. H.G.
31.3 99.7 9.2 At2g27250 817267 CLV3 (CLAVATA3) One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. O.I. C.G. H.G.
31.2 99.7 43.1 At5g48820 834940 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. O.I. C.G. H.G.
31.0 99.7 17.2 At1g65810 842892 tRNA-splicing endonuclease positive effector-related F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
30.8 99.7 44.4 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
30.3 99.7 6.3 At4g31260 829253 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.9 99.7 78.5 At1g78170 844153 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.8 99.7 61.3 At5g02030 831745 RPL (REPLUMLESS) Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP. O.I. C.G. H.G.
29.7 99.7 241.3 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
28.9 99.7 92.1 At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
28.9 99.7 41.3 At1g53140 841748 dynamin family protein Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis. O.I. C.G. H.G.
28.8 99.7 44.3 At5g53900 835472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
28.6 99.7 20.6 At4g14150 827054 PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1) Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast. O.I. C.G. H.G.
28.6 99.7 13.3 At4g14840 827141 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOFBPAV O.I. C.G. H.G.
28.4 99.7 103.4 At4g02150 827472 MOS6 (MODIFIER OF SNC1, 6) Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. C.G. H.G.
28.4 99.7 34.7 At5g67270 836862 ATEB1C (microtubule end binding protein 1) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis. O.I. C.G. H.G.
27.9 99.7 73.5 At1g11280 837670 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA O.I. C.G. H.G.
27.7 99.7 35.8 At3g25560 822143 NIK2 (NSP-INTERACTING KINASE 2) F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
332.6	100.0	84.1	At5g03840	831683	TFL1 (TERMINAL FLOWER 1)	Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole.	O.I.	C.G.	H.G.
328.6	100.0	213.4	At4g35190	829672	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM	O.I.	C.G.	H.G.
320.2	100.0	202.4	At5g67110	836846	ALC (ALCATRAZ)	encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.	O.I.	C.G.	H.G.
284.8	100.0	128.9	At1g23000	838908	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFB	O.I.	C.G.	H.G.
244.7	100.0	47.5	At4g31610	829288	REM1 (REPRODUCTIVE MERISTEM 1)	Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	O.I.	C.G.	H.G.
235.6	100.0	133.6	At3g61250	825297	AtMYB17 (myb domain protein 17)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
199.1	100.0	48.7	At5g51870	835262	AGL71 (AGAMOUS-LIKE 71)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBA	O.I.	C.G.	H.G.
142.2	99.9	27.9	At2g06200	815176	AtGRF6 (GROWTH-REGULATING FACTOR 6)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower	O.I.	C.G.	H.G.
128.2	99.9	185.1	At1g80050	844345	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.	O.I.	C.G.	H.G.
125.9	99.9	155.1	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	O.I.	C.G.	H.G.
117.1	99.9	68.8	At2g18550	816370	HB-2 (HOMEOBOX-2)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
106.9	99.9	178.5	At5g44630	834491	terpene synthase/cyclase family protein	Encodes a sesquiterpene synthase involved in generating all of the group B sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in intrafloral nectaries.	O.I.	C.G.	H.G.
93.9	99.9	27.5	At2g27220	817264	BLH5 (BELL1-like homeodomain 5)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
92.7	99.9	345.9	At2g26330	817173	ER (ERECTA)	Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.	O.I.	C.G.	H.G.
89.6	99.9	127.9	At3g55110	824677	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
81.1	99.9	205.5	At1g22160	838821	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
79.8	99.9	23.8	At3g13130	820501	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPFB	O.I.	C.G.	H.G.
78.2	99.9	35.6	At2g01940	814725	nucleic acid binding / transcription factor/ zinc ion binding	May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.	O.I.	C.G.	H.G.
77.2	99.9	93.3	At4g30520	829175	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
74.7	99.9	157.5	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
71.6	99.9	83.6	At3g02210	821245	COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
71.5	99.9	40.6	At5g07800	830673	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
69.1	99.9	501.6	At1g70160	843352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
66.9	99.8	51.2	At5g62165	836337	AGL42 (AGAMOUS LIKE 42)	Encodes a MADS box transcription factor. Expressed in quiescent center.	O.I.	C.G.	H.G.
64.7	99.8	35.1	At2g02540	814784	ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21)	Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene.	O.I.	C.G.	H.G.
64.3	99.8	92.6	At1g10180	837556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
64.1	99.8	142.2	At1g69700	843306	ATHVA22C	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
62.0	99.8	35.4	At1g26260	839167	CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)	Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	O.I.	C.G.	H.G.
60.8	99.8	5.3	At5g50500	835118	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
60.6	99.8	235.6	At5g67260	836861	CYCD3	Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.
59.3	99.8	19.1	At5g20420	832164	CHR42 (chromatin remodeling 42)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPAV	O.I.	C.G.	H.G.
58.5	99.8	17.5	At2g39680		-	-	O.I.	C.G.	H.G.
56.9	99.8	41.4	At3g14980	820727	PHD finger transcription factor, putative	F:protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity;P:regulation of transcription, DNA-dependent, metabolic process;C:nucleus;MPFOBA	O.I.	C.G.	H.G.
56.5	99.8	11.5	At5g32460	3771028	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown	O.I.	C.G.	H.G.
55.6	99.8	68.4	At5g58600	835974	PMR5 (POWDERY MILDEW RESISTANT 5)	Belongs to a large family of plant-specific genes of unknown function. Involved in resistance to the powdery mildew species Erysiphe cichoracearum and Erysiphe orontii, but not to the unrelated pathogens Pseudomonas syringae or Peronospora parasitica.	O.I.	C.G.	H.G.
55.3	99.8	165.3	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	C.G.	H.G.
53.9	99.8	44.6	At2g16270	816123	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.
52.5	99.8	77.4	At4g13640	826998	UNE16 (unfertilized embryo sac 16)	F:transcription factor activity;P:double fertilization forming a zygote and endosperm;C:unknown;POBM	O.I.	C.G.	H.G.
52.3	99.8	46.9	At4g16447	827342	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.9	99.8	31.5	At1g76420	843975	CUC3 (CUP SHAPED COTYLEDON3)	Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.	O.I.	C.G.	H.G.
46.7	99.8	12.1	At3g15170	820748	CUC1 (CUP-SHAPED COTYLEDON1)	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.	O.I.	C.G.	H.G.
46.4	99.8	58.2	At1g60890	842381	phosphatidylinositol-4-phosphate 5-kinase family protein	F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPF	O.I.	C.G.	H.G.
45.9	99.8	24.9	At5g40210	834019	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAFM	O.I.	C.G.	H.G.
44.0	99.8	41.1	At1g69600	843296	ZFHD1 (ZINC FINGER HOMEODOMAIN 1)	Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.	O.I.	C.G.	H.G.
43.7	99.8	22.5	At3g24340	822023	chr40 (chromatin remodeling 40)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVA	O.I.	C.G.	H.G.
41.8	99.8	37.5	At5g07180	830609	ERL2 (ERECTA-LIKE 2)	Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.	O.I.	C.G.	H.G.
41.8	99.8	26.7	At5g40280	834026	ERA1 (ENHANCED RESPONSE TO ABA 1)	encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.	O.I.	C.G.	H.G.
41.5	99.8	98.0	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
40.8	99.8	66.0	At1g05710	837078	ethylene-responsive protein, putative	F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
40.6	99.8	34.5	At2g28085	817353	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
39.6	99.8	11.8	At1g26530	839193	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
39.0	99.8	12.9	At3g26050	822202	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPV	O.I.	C.G.	H.G.
38.7	99.8	21.0	At2g45870	819195	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BFPO	O.I.	C.G.	H.G.
38.6	99.8	49.7	At2g41890	818789	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein	F:sugar binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
38.3	99.8	29.5	At3g13190	820509	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
37.3	99.7	32.9	At5g18770	831995	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
37.2	99.7	50.3	At5g13290	831170	CRN (CORYNE)	Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels.	O.I.	C.G.	H.G.
37.1	99.7	99.6	At3g50070	824169	CYCD3	Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.
37.0	99.7	92.5	At5g43810	834403	ZLL (ZWILLE)	Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.	O.I.	C.G.	H.G.
37.0	99.7	27.3	At4g24790	828581	ATP binding / DNA binding / DNA-directed DNA polymerase	F:DNA binding, DNA-directed DNA polymerase activity, ATP binding;P:DNA replication;C:DNA polymerase III complex;BOFMAPV	O.I.	C.G.	H.G.
36.6	99.7	83.1	At1g53160	841749	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
36.5	99.7	10.8	At1g80100	844350	AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)	AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
35.9	99.7	41.1	At5g62410	836362	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	SMC2-1 (SMC2)	O.I.	C.G.	H.G.
35.8	99.7	96.1	At5g23610	832427	-	F:unknown;P:biological_process unknown;C:unknown;POBFAM	O.I.	C.G.	H.G.
35.8	99.7	62.5	At2g22420	816773	peroxidase 17 (PER17) (P17)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
35.6	99.7	25.9	At3g43920	823508	ribonuclease III family protein	Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.	O.I.	C.G.	H.G.
35.2	99.7	22.4	At5g65120	836636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
35.1	99.7	37.6	At2g31160	817672	LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
34.8	99.7	15.8	At3g20900	821639	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
34.1	99.7	66.8	At3g22520	821823	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;OMBFPA	O.I.	C.G.	H.G.
33.5	99.7	43.7	At2g28130	817359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
33.5	99.7	20.3	At2g21800	816716	ATEME1A (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A)	Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.	O.I.	C.G.	H.G.
33.3	99.7	37.7	At2g32590	817819	-	F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPV	O.I.	C.G.	H.G.
33.3	99.7	30.4	At4g01730	826911	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:unknown;MOFP	O.I.	C.G.	H.G.
32.9	99.7	30.2	At2g18850	816400	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
32.4	99.7	65.4	At4g34400	829590	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
32.3	99.7	78.5	At1g10640	837607	polygalacturonase	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA	O.I.	C.G.	H.G.
32.1	99.7	55.0	At5g56790	835781	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
32.0	99.7	80.6	At1g62360	842534	STM (SHOOT MERISTEMLESS)	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.	O.I.	C.G.	H.G.
31.7	99.7	121.1	At5g26850	832743	-	F:unknown;P:biological_process unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
31.6	99.7	73.8	At5g08580	830759	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:plasma membrane;MPOFB	O.I.	C.G.	H.G.
31.4	99.7	24.4	At5g01200	831676	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
31.3	99.7	23.9	At2g40200	818611	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB	O.I.	C.G.	H.G.
31.3	99.7	9.2	At2g27250	817267	CLV3 (CLAVATA3)	One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function.	O.I.	C.G.	H.G.
31.2	99.7	43.1	At5g48820	834940	ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)	Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.	O.I.	C.G.	H.G.
31.0	99.7	17.2	At1g65810	842892	tRNA-splicing endonuclease positive effector-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
30.8	99.7	44.4	At5g53660	835447	AtGRF7 (GROWTH-REGULATING FACTOR 7)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
30.3	99.7	6.3	At4g31260	829253	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.9	99.7	78.5	At1g78170	844153	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.8	99.7	61.3	At5g02030	831745	RPL (REPLUMLESS)	Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.	O.I.	C.G.	H.G.
29.7	99.7	241.3	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
28.9	99.7	92.1	At3g13510	820553	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
28.9	99.7	41.3	At1g53140	841748	dynamin family protein	Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.	O.I.	C.G.	H.G.
28.8	99.7	44.3	At5g53900	835472	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
28.6	99.7	20.6	At4g14150	827054	PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1)	Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.	O.I.	C.G.	H.G.
28.6	99.7	13.3	At4g14840	827141	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MOFBPAV	O.I.	C.G.	H.G.
28.4	99.7	103.4	At4g02150	827472	MOS6 (MODIFIER OF SNC1, 6)	Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	C.G.	H.G.
28.4	99.7	34.7	At5g67270	836862	ATEB1C (microtubule end binding protein 1)	encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.	O.I.	C.G.	H.G.
27.9	99.7	73.5	At1g11280	837670	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
27.7	99.7	35.8	At3g25560	822143	NIK2 (NSP-INTERACTING KINASE 2)	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.

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GSM ID	GSM242956
Assay name	Steroid day 1 (day1D2)
GSE experiment	GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

Microarray experiments to specifically-expressed genes

GSM ID GSM242956 Assay name Steroid day 1 (day1D2) GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis

GSM ID GSM242956

Assay name Steroid day 1 (day1D2)

GSE experiment GSE9605: Target genes of AGAMOUS during early flower development in Arabidopsis