Microarray experiments to specifically-expressed genes

GSM ID GSM232886
Assay name Wt.4-3.90
GSE experiment GSE9201: Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
558.2100.0268.9At1g01900839318SBTI1.1Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.O.I.C.G.H.G.
409.5100.087.8At1g75050843843-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
238.2100.040.8At3g63360825511defensin-relatedEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
92.099.9301.1At1g13710837932CYP78A5member of CYP78AO.I.C.G.H.G.
89.699.925.9At1g29180839792DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
86.499.9166.0At1g12140837766FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
83.999.933.6At1g21540838755AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
70.899.915.4At1g31630840050AGL86 (AGAMOUS-LIKE 86)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFBO.I.C.G.H.G.
67.499.8120.0At3g10570820222CYP77A6member of CYP77AO.I.C.G.H.G.
61.699.812.3At3g12440820423extensin family proteinF:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;PMOBFVO.I.C.G.H.G.
60.999.8233.8At1g75940843927ATA27encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.O.I.C.G.H.G.
60.799.842.3At5g62730836394proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
56.999.8103.0At1g31335840022unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
56.799.842.4At5g48330834886regulator of chromosome condensation (RCC1) family proteinF:binding;P:biological_process unknown;C:unknown;MOBPFAVO.I.C.G.H.G.
55.899.8177.0At1g30820839964CTP synthase, putative / UTP--ammonia ligase, putativeF:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:unknown;OBMFAPO.I.C.G.H.G.
54.599.871.3At1g51460841571ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
51.899.839.1At3g62780825453C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVFBO.I.C.G.H.G.
51.799.8234.5At3g51590824322LTP12 (LIPID TRANSFER PROTEIN 12)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
50.799.840.1At1g64960842804bindingF:binding;P:unknown;C:mitochondrion;MOPO.I.C.G.H.G.
47.899.8349.7At5g33370833315GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
47.799.868.7At5g48210834874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
44.499.825.4At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
43.599.815.4At1g64930842801CYP89A7member of CYP89AO.I.C.G.H.G.
41.899.830.6At3g03680821190C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVAO.I.C.G.H.G.
40.799.865.8At4g28980829019cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1)Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.O.I.C.G.H.G.
38.999.871.2At1g31830840073amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BMOFAPO.I.C.G.H.G.
38.999.849.4At2g45560819164CYP76C1cytochrome P450 monooxygenaseO.I.C.G.H.G.
38.899.818.0At1g26710839212unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
37.299.712.7At3g124608204253'-5' exonuclease/ nucleic acid bindingF:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;PMFOO.I.C.G.H.G.
36.799.732.9At5g66330836765leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
36.399.797.2At1g58430842212RXF26Encodes an anther-specific proline-rich protein.O.I.C.G.H.G.
35.999.757.6At1g20120838601family II extracellular lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAVO.I.C.G.H.G.
35.299.7422.0At3g15400820779ATA20Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.O.I.C.G.H.G.
34.999.7109.3At3g51895824353SULTR3Encodes a sulfate transporter.O.I.C.G.H.G.
34.799.729.6At4g38210829977ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
34.499.752.3At4g14815827138protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
34.299.738.0At2g19070816424SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)O.I.C.G.H.G.
33.999.713.0At2g38490818431CIPK22 (CBL-INTERACTING PROTEIN KINASE 22)member of AtCIPKsO.I.C.G.H.G.
32.799.761.4At1g75030843841ATLP-3encodes a PR5-like proteinO.I.C.G.H.G.
31.899.772.2At4g20050827750QRT3 (QUARTET 3)Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development.O.I.C.G.H.G.
31.699.729.5At3g23770821959glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
31.499.721.6At3g51090824273-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBAVO.I.C.G.H.G.
31.099.7132.9At5g62080836328protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
30.899.7176.3At2g04570814999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
30.699.7117.3At5g23940832459EMB3009 (embryo defective 3009)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBOO.I.C.G.H.G.
30.499.7133.3At1g75910843924EXL4member of Lipase proteinsO.I.C.G.H.G.
29.999.758.4At5g16960831559NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPAO.I.C.G.H.G.
29.799.759.1At1g30020839881unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.499.712.4At1g72530843585plastid developmental protein DAG, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.999.7167.2At2g46370819244JAR1 (JASMONATE RESISTANT 1)Encodes a jasmonate-amido synthetase that is a member of the GH3 family of proteins. JAR1 catalyzes the formation of a biologically active jasmonyl-isoleucine (JA-Ile) conjugate. JA-Ile promotes the interaction between JAZ1 and COI1 in the jasmonate signaling pathway. JAR1 localizes to the cytoplasm and is also a phytochrome A signaling component. JAR1 is an auxin-induced gene. Loss of function mutants are defective in a variety of responses to jasmonic acid. JAR1 has additional enzymatic activities in vitro, (e.g. the ability to synthesize adenosine 5'-tetraphosphate and other JA conjugates), but there are no data to show whether JAR1 catalyzes many of these reactions in vivo. JAR1 is involved in pathogen defense, sensitivity to ozone, and wound responses.O.I.C.G.H.G.
28.799.737.9At3g15270820758SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
28.499.7389.6At2g20870816620cell wall protein precursor, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMFO.I.C.G.H.G.
28.299.7358.8At5g09440830803EXL4 (EXORDIUM LIKE 4)F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
27.199.744.9At1g13140837871CYP86C3member of CYP86CO.I.C.G.H.G.
26.999.7207.0At5g22430832304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
26.899.770.0At2g03850814911late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFAO.I.C.G.H.G.
26.399.745.7At5g55640835658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.799.7103.0At5g07230830614protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
25.599.7311.9At5g07550830648GRP19 (GLYCINE-RICH PROTEIN 19)member of Oleosin-like protein familyO.I.C.G.H.G.
24.199.6328.4At1g66850843003protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
23.799.685.4At4g19430827684unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
23.499.625.4At5g02190831845PCS1 (PROMOTION OF CELL SURVIVAL 1)encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.O.I.C.G.H.G.
23.399.612.3At3g62740825449BGLU7 (BETA GLUCOSIDASE 7)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
22.699.662.2At4g28395828956ATA7related to lipid transfer proteinsO.I.C.G.H.G.
22.299.6104.5At3g54340824601AP3 (APETALA 3)Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA.O.I.C.G.H.G.
21.899.6306.9At3g04290819584LTL1 (LI-TOLERANT LIPASE 1)F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
21.899.628.3At1g08065837324ACA5 (ALPHA CARBONIC ANHYDRASE 5)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFVO.I.C.G.H.G.
21.699.646.0At1g12570837814glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAO.I.C.G.H.G.
21.499.680.3At4g14080827044MEE48 (maternal effect embryo arrest 48)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;POO.I.C.G.H.G.
21.199.620.6At3g57620824931glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOMO.I.C.G.H.G.
20.699.660.7At5g01500831861mitochondrial substrate carrier family proteinencodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnoverO.I.C.G.H.G.
20.599.620.2At3g09780820136CCR1 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 1)F:protein serine/threonine kinase activity, receptor activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
20.399.623.1At1g22660838872tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putativeF:tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity;P:tRNA processing, RNA processing;C:mitochondrion;BOFMPVAO.I.C.G.H.G.
20.299.614.7At1g01390837790UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
19.899.620.8At3g06910819876ULP1A (UB-LIKE PROTEASE 1A)Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. In vitro assays suggest that this enzyme is active against SUMO1 and SUMO2. It has weak activity with SUMO3 and cannot act on SUMO5. The N-terminal regulatory region of this protein is required for full activity.O.I.C.G.H.G.
19.799.661.4At4g35420829695dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAVO.I.C.G.H.G.
19.399.6120.5At1g68875843220unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.399.661.8At4g37900829946glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVAO.I.C.G.H.G.
19.299.6196.8At3g17790821047PAP17F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFAO.I.C.G.H.G.
19.099.549.1At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFO.I.C.G.H.G.
18.999.58.2At3g12470820426nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
18.699.588.5At1g33430840236galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPOO.I.C.G.H.G.
18.399.521.8At1g64450842753proline-rich family proteinF:unknown;P:unknown;C:unknown;MBOPFVAO.I.C.G.H.G.
18.199.547.6At3g42960823352ATA1 (ARABIDOPSIS TAPETUM 1)Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.O.I.C.G.H.G.
17.999.548.7At2g03740814901late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFAO.I.C.G.H.G.
17.899.5150.3At5g56760835778ATSERAT1Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.O.I.C.G.H.G.
17.799.590.4At1g67990843127TSM1Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.O.I.C.G.H.G.
17.499.516.8At1g75790843912sks18 (SKU5 Similar 18)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
17.299.513.3At1g01570837183fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PFMOO.I.C.G.H.G.
16.999.5144.2At1g01300839375aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFOO.I.C.G.H.G.
16.899.595.3At1g11670837711MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:N-terminal protein myristoylation, multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
16.899.566.0At1g69120843244AP1 (APETALA1)Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.O.I.C.G.H.G.
16.799.59.5At5g62320836353ATMYB99 (MYB DOMAIN PROTEIN 99)Encodes a putative transcription factor (MYB99).O.I.C.G.H.G.
16.599.5123.1At5g07560830649GRP20 (GLYCINE-RICH PROTEIN 20)Lipid-binding oleosins, glycine-rich protein.O.I.C.G.H.G.
16.399.5344.4At1g48750841297protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
16.299.520.6At3g24150822001unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
16.299.58.7At5g55360835629long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
15.899.5622.7At1g54040841842ESP (EPITHIOSPECIFIER PROTEIN)Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.O.I.C.G.H.G.
15.899.595.8At1g75930843926EXL6member of Lipase proteinsO.I.C.G.H.G.
15.399.428.2At3g52160824381KCS15 (3-KETOACYL-COA SYNTHASE 15)Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.



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