CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM231203

Assay name chl1 at T0.5, biological rep2

GSE experiment GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
431.5 100.0 111.9 At4g32950 829432 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
95.9 99.9 58.7 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
88.0 99.9 280.0 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
81.0 99.9 37.8 At4g31970 829327 CYP82C2 member of CYP82C O.I. C.G. H.G.
78.3 99.9 126.6 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
70.0 99.9 13.3 At4g37850 829941 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
67.0 99.8 56.3 At4g13420 826973 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels. O.I. C.G. H.G.
62.4 99.8 57.3 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
62.2 99.8 22.1 At2g34180 817979 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) Encodes CBL-interacting protein kinase 13 (CIPK13). O.I. C.G. H.G.
58.2 99.8 31.2 At1g52250 - - O.I. C.G. H.G.
52.4 99.8 44.5 At3g02610 820709 acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
50.7 99.8 535.4 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
48.8 99.8 37.7 At2g48080 819420 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
43.7 99.8 58.3 At1g78050 844140 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
42.1 99.8 51.4 At4g13860 827020 glycine-rich RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
40.5 99.8 144.0 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
38.9 99.8 84.0 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
38.5 99.8 86.6 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
36.4 99.7 38.9 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family O.I. C.G. H.G.
35.9 99.7 74.7 At5g06300 830518 carboxy-lyase F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA O.I. C.G. H.G.
34.7 99.7 173.4 At3g59930 825163 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
34.1 99.7 120.7 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
33.5 99.7 219.4 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
33.3 99.7 49.4 At1g26390 839181 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
33.2 99.7 28.8 At4g30110 829134 HMA2 encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc O.I. C.G. H.G.
32.9 99.7 32.1 At5g20550 832177 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
32.6 99.7 44.7 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
32.2 99.7 460.2 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. C.G. H.G.
29.4 99.7 164.1 At5g07460 830637 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness. O.I. C.G. H.G.
29.3 99.7 56.0 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
28.3 99.7 17.7 At2g36090 818182 F-box family protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
26.8 99.7 165.3 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.
26.4 99.7 134.6 At5g02230 831784 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
26.3 99.7 88.0 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
26.3 99.7 32.2 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. O.I. C.G. H.G.
26.3 99.7 27.3 At1g49160 841339 WNK7 Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its O.I. C.G. H.G.
25.6 99.7 262.5 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
25.4 99.6 67.5 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
25.3 99.6 57.5 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
25.2 99.6 20.6 At4g15330 827199 CYP705A1 a member of the cytochrome P450 family O.I. C.G. H.G.
24.8 99.6 202.5 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
24.5 99.6 68.7 At3g27170 822336 CLC-B (CHLORIDE CHANNEL B) member of Anion channel protein family O.I. C.G. H.G.
24.5 99.6 35.2 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
24.2 99.6 19.6 At1g03410 838763 2A6 F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFM O.I. C.G. H.G.
24.1 99.6 168.6 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
24.0 99.6 149.4 At3g49940 824156 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.8 99.6 123.6 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
23.0 99.6 43.0 At5g47950 834846 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
22.1 99.6 50.6 At3g16690 820921 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
22.0 99.6 59.4 At1g22550 838861 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
21.9 99.6 71.2 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
21.7 99.6 59.4 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
21.4 99.6 66.3 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA O.I. C.G. H.G.
21.4 99.6 12.9 At2g48090 819421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
20.5 99.6 89.7 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. O.I. C.G. H.G.
20.5 99.6 82.1 At4g23420 828441 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
20.3 99.6 306.6 At2g01520 814681 MLP328 (MLP-LIKE PROTEIN 328) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
19.7 99.6 20.6 At5g47960 834847 ATRABA4C Encodes a small molecular weight g-protein. O.I. C.G. H.G.
19.5 99.6 72.2 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO O.I. C.G. H.G.
19.4 99.6 28.4 At3g45650 823707 NAXT1 (NITRATE EXCRETION TRANSPORTER1) Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots. O.I. C.G. H.G.
19.2 99.6 285.4 At4g21850 828273 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
19.1 99.6 66.7 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
18.7 99.5 161.2 At3g02910 821189 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA O.I. C.G. H.G.
18.6 99.5 26.4 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.
18.6 99.5 23.8 At1g70990 843438 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVA O.I. C.G. H.G.
18.2 99.5 385.7 At1g70850 843422 MLP34 (MLP-LIKE PROTEIN 34) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
18.0 99.5 45.2 At1g10480 837588 ZFP5 (ZINC FINGER PROTEIN 5) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
17.9 99.5 55.1 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
17.8 99.5 16.8 At1g66440 842962 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
17.5 99.5 302.8 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
17.5 99.5 100.0 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.5 99.5 19.5 At1g35330 840422 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
17.4 99.5 28.7 At3g13760 820585 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. C.G. H.G.
17.3 99.5 81.5 At3g52360 824401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.3 99.5 50.3 At5g42500 834257 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
17.1 99.5 167.9 At3g21770 821731 peroxidase 30 (PER30) (P30) (PRXR9) F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBM O.I. C.G. H.G.
17.0 99.5 50.9 At1g14120 837971 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
17.0 99.5 7.4 At1g73310 843665 scpl4 (serine carboxypeptidase-like 4) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
16.9 99.5 222.2 At4g21830 828271 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
16.8 99.5 57.5 At5g42590 834266 CYP71A16 putative cytochrome P450 O.I. C.G. H.G.
16.7 99.5 61.0 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. O.I. C.G. H.G.
15.9 99.5 535.0 At1g73330 843668 ATDR4 encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level. O.I. C.G. H.G.
15.9 99.5 276.6 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
15.9 99.5 77.0 At4g33110 829448 coclaurine N-methyltransferase, putative F:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMA O.I. C.G. H.G.
15.9 99.5 33.7 At1g23120 838920 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
15.9 99.5 12.5 At3g55790 824745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFV O.I. C.G. H.G.
15.1 99.4 197.5 At3g20370 821582 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOF O.I. C.G. H.G.
15.1 99.4 24.7 At3g12750 820457 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. O.I. C.G. H.G.
15.0 99.4 24.0 At5g09800 830840 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF O.I. C.G. H.G.
14.7 99.4 23.1 At1g65510 842863 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
14.6 99.4 67.2 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
14.6 99.4 62.7 At3g24100 821996 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
14.0 99.4 13.6 At1g50520 841474 CYP705A27 member of CYP705A O.I. C.G. H.G.
13.9 99.4 230.1 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
13.9 99.4 27.6 At5g62920 836412 ARR6 (RESPONSE REGULATOR 6) Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin. O.I. C.G. H.G.
13.8 99.4 58.5 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
13.7 99.4 71.3 At4g39660 830120 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA, O.I. C.G. H.G.
13.4 99.4 236.4 At3g15950 820839 NAI2 Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies. O.I. C.G. H.G.
13.3 99.4 294.5 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
13.3 99.4 74.8 At5g20885 832212 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
431.5	100.0	111.9	At4g32950	829432	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
95.9	99.9	58.7	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
88.0	99.9	280.0	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
81.0	99.9	37.8	At4g31970	829327	CYP82C2	member of CYP82C	O.I.	C.G.	H.G.
78.3	99.9	126.6	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
70.0	99.9	13.3	At4g37850	829941	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
67.0	99.8	56.3	At4g13420	826973	HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)	Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.	O.I.	C.G.	H.G.
62.4	99.8	57.3	At2g35270	818094	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
62.2	99.8	22.1	At2g34180	817979	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)	Encodes CBL-interacting protein kinase 13 (CIPK13).	O.I.	C.G.	H.G.
58.2	99.8	31.2	At1g52250		-	-	O.I.	C.G.	H.G.
52.4	99.8	44.5	At3g02610	820709	acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
50.7	99.8	535.4	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
48.8	99.8	37.7	At2g48080	819420	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
43.7	99.8	58.3	At1g78050	844140	PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)	F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
42.1	99.8	51.4	At4g13860	827020	glycine-rich RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
40.5	99.8	144.0	At4g22610	828357	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
38.9	99.8	84.0	At4g17800	827502	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
38.5	99.8	86.6	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
36.4	99.7	38.9	At5g42580	834265	CYP705A12	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
35.9	99.7	74.7	At5g06300	830518	carboxy-lyase	F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA	O.I.	C.G.	H.G.
34.7	99.7	173.4	At3g59930	825163	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
34.1	99.7	120.7	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
33.5	99.7	219.4	At5g23830	832448	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
33.3	99.7	49.4	At1g26390	839181	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
33.2	99.7	28.8	At4g30110	829134	HMA2	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	O.I.	C.G.	H.G.
32.9	99.7	32.1	At5g20550	832177	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
32.6	99.7	44.7	At2g42350	818836	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
32.2	99.7	460.2	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	C.G.	H.G.
29.4	99.7	164.1	At5g07460	830637	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.	O.I.	C.G.	H.G.
29.3	99.7	56.0	At5g47980	834849	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
28.3	99.7	17.7	At2g36090	818182	F-box family protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
26.8	99.7	165.3	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.
26.4	99.7	134.6	At5g02230	831784	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
26.3	99.7	88.0	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
26.3	99.7	32.2	At2g35000	818064	zinc finger (C3HC4-type RING finger) family protein	E3 ligase-like protein induced by chitin oligomers.	O.I.	C.G.	H.G.
26.3	99.7	27.3	At1g49160	841339	WNK7	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	O.I.	C.G.	H.G.
25.6	99.7	262.5	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
25.4	99.6	67.5	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
25.3	99.6	57.5	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
25.2	99.6	20.6	At4g15330	827199	CYP705A1	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
24.8	99.6	202.5	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
24.5	99.6	68.7	At3g27170	822336	CLC-B (CHLORIDE CHANNEL B)	member of Anion channel protein family	O.I.	C.G.	H.G.
24.5	99.6	35.2	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
24.2	99.6	19.6	At1g03410	838763	2A6	F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
24.1	99.6	168.6	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
24.0	99.6	149.4	At3g49940	824156	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.8	99.6	123.6	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
23.0	99.6	43.0	At5g47950	834846	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
22.1	99.6	50.6	At3g16690	820921	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
22.0	99.6	59.4	At1g22550	838861	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
21.9	99.6	71.2	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
21.7	99.6	59.4	At2g29750	817525	UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
21.4	99.6	66.3	At5g40510	834049	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA	O.I.	C.G.	H.G.
21.4	99.6	12.9	At2g48090	819421	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
20.5	99.6	89.7	At5g42600	834267	MRN1 (MARNERAL SYNTHASE)	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.	O.I.	C.G.	H.G.
20.5	99.6	82.1	At4g23420	828441	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
20.3	99.6	306.6	At2g01520	814681	MLP328 (MLP-LIKE PROTEIN 328)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.7	99.6	20.6	At5g47960	834847	ATRABA4C	Encodes a small molecular weight g-protein.	O.I.	C.G.	H.G.
19.5	99.6	72.2	At2g44380	819045	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
19.4	99.6	28.4	At3g45650	823707	NAXT1 (NITRATE EXCRETION TRANSPORTER1)	Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.	O.I.	C.G.	H.G.
19.2	99.6	285.4	At4g21850	828273	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
19.1	99.6	66.7	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
18.7	99.5	161.2	At3g02910	821189	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA	O.I.	C.G.	H.G.
18.6	99.5	26.4	At2g02680	814797	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.
18.6	99.5	23.8	At1g70990	843438	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVA	O.I.	C.G.	H.G.
18.2	99.5	385.7	At1g70850	843422	MLP34 (MLP-LIKE PROTEIN 34)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.0	99.5	45.2	At1g10480	837588	ZFP5 (ZINC FINGER PROTEIN 5)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
17.9	99.5	55.1	At4g18340	827561	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
17.8	99.5	16.8	At1g66440	842962	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
17.5	99.5	302.8	At2g01530	814682	MLP329 (MLP-LIKE PROTEIN 329)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.5	99.5	100.0	At2g29995	817550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.5	99.5	19.5	At1g35330	840422	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
17.4	99.5	28.7	At3g13760	820585	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO	O.I.	C.G.	H.G.
17.3	99.5	81.5	At3g52360	824401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.3	99.5	50.3	At5g42500	834257	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
17.1	99.5	167.9	At3g21770	821731	peroxidase 30 (PER30) (P30) (PRXR9)	F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBM	O.I.	C.G.	H.G.
17.0	99.5	50.9	At1g14120	837971	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
17.0	99.5	7.4	At1g73310	843665	scpl4 (serine carboxypeptidase-like 4)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
16.9	99.5	222.2	At4g21830	828271	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
16.8	99.5	57.5	At5g42590	834266	CYP71A16	putative cytochrome P450	O.I.	C.G.	H.G.
16.7	99.5	61.0	At2g32270	817787	ZIP3	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	O.I.	C.G.	H.G.
15.9	99.5	535.0	At1g73330	843668	ATDR4	encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.	O.I.	C.G.	H.G.
15.9	99.5	276.6	At4g15390	827205	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
15.9	99.5	77.0	At4g33110	829448	coclaurine N-methyltransferase, putative	F:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMA	O.I.	C.G.	H.G.
15.9	99.5	33.7	At1g23120	838920	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.9	99.5	12.5	At3g55790	824745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFV	O.I.	C.G.	H.G.
15.1	99.4	197.5	At3g20370	821582	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOF	O.I.	C.G.	H.G.
15.1	99.4	24.7	At3g12750	820457	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.	O.I.	C.G.	H.G.
15.0	99.4	24.0	At5g09800	830840	U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF	O.I.	C.G.	H.G.
14.7	99.4	23.1	At1g65510	842863	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
14.6	99.4	67.2	At1g24280	839044	G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
14.6	99.4	62.7	At3g24100	821996	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
14.0	99.4	13.6	At1g50520	841474	CYP705A27	member of CYP705A	O.I.	C.G.	H.G.
13.9	99.4	230.1	At3g53980	824565	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
13.9	99.4	27.6	At5g62920	836412	ARR6 (RESPONSE REGULATOR 6)	Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.	O.I.	C.G.	H.G.
13.8	99.4	58.5	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
13.7	99.4	71.3	At4g39660	830120	AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)	alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,	O.I.	C.G.	H.G.
13.4	99.4	236.4	At3g15950	820839	NAI2	Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.	O.I.	C.G.	H.G.
13.3	99.4	294.5	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
13.3	99.4	74.8	At5g20885	832212	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV	O.I.	C.G.	H.G.

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GSM ID	GSM231203
Assay name	chl1 at T0.5, biological rep2
GSE experiment	GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h

Microarray experiments to specifically-expressed genes

GSM ID GSM231203 Assay name chl1 at T0.5, biological rep2 GSE experiment GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h

GSM ID GSM231203

Assay name chl1 at T0.5, biological rep2

GSE experiment GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h