Microarray experiments to specifically-expressed genes

GSM ID GSM231203
Assay name chl1 at T0.5, biological rep2
GSE experiment GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
431.5100.0111.9At4g32950829432protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
95.999.958.7At1g68880843221AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFOO.I.C.G.H.G.
88.099.9280.0At1g14960838061major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
81.099.937.8At4g31970829327CYP82C2member of CYP82CO.I.C.G.H.G.
78.399.9126.6At5g23840832449MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
70.099.913.3At4g37850829941basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBO.I.C.G.H.G.
67.099.856.3At4g13420826973HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.O.I.C.G.H.G.
62.499.857.3At2g35270818094DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
62.299.822.1At2g34180817979CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)Encodes CBL-interacting protein kinase 13 (CIPK13).O.I.C.G.H.G.
58.299.831.2At1g52250--O.I.C.G.H.G.
52.499.844.5At3g02610820709acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion bindingF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOMO.I.C.G.H.G.
50.799.8535.4At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
48.899.837.7At2g48080819420oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
43.799.858.3At1g78050844140PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPAO.I.C.G.H.G.
42.199.851.4At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
40.599.8144.0At4g22610828357protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
38.999.884.0At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFO.I.C.G.H.G.
38.599.886.6At2g151203768033-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
36.499.738.9At5g42580834265CYP705A12a member of the cytochrome P450 familyO.I.C.G.H.G.
35.999.774.7At5g06300830518carboxy-lyaseF:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMAO.I.C.G.H.G.
34.799.7173.4At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
34.199.7120.7At3g22570821829protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
33.599.7219.4At5g23830832448MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
33.399.749.4At1g26390839181FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
33.299.728.8At4g30110829134HMA2encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zincO.I.C.G.H.G.
32.999.732.1At5g20550832177oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
32.699.744.7At2g42350818836zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
32.299.7460.2At4g12550826868AIR1isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.O.I.C.G.H.G.
29.499.7164.1At5g07460830637PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.O.I.C.G.H.G.
29.399.756.0At5g47980834849transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
28.399.717.7At2g36090818182F-box family proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
26.899.7165.3At5g47990834850CYP705A5encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.O.I.C.G.H.G.
26.499.7134.6At5g02230831784haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAO.I.C.G.H.G.
26.399.788.0At5g37990833778S-adenosylmethionine-dependent methyltransferase/ methyltransferaseF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMFO.I.C.G.H.G.
26.399.732.2At2g35000818064zinc finger (C3HC4-type RING finger) family proteinE3 ligase-like protein induced by chitin oligomers.O.I.C.G.H.G.
26.399.727.3At1g49160841339WNK7Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. ItsO.I.C.G.H.G.
25.699.7262.5At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
25.499.667.5At5g43520834372DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFO.I.C.G.H.G.
25.399.657.5At2g23620816894MES1 (METHYL ESTERASE 1)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
25.299.620.6At4g15330827199CYP705A1a member of the cytochrome P450 familyO.I.C.G.H.G.
24.899.6202.5At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.C.G.H.G.
24.599.668.7At3g27170822336CLC-B (CHLORIDE CHANNEL B)member of Anion channel protein familyO.I.C.G.H.G.
24.599.635.2At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
24.299.619.6At1g034108387632A6F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFMO.I.C.G.H.G.
24.199.6168.6At1g02900839389RALF1 (RAPID ALKALINIZATION FACTOR 1)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
24.099.6149.4At3g49940824156LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.899.6123.6At5g48000834851CYP708A2Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.O.I.C.G.H.G.
23.099.643.0At5g47950834846transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
22.199.650.6At3g16690820921nodulin MtN3 family proteinF:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
22.099.659.4At1g22550838861proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
21.999.671.2At4g31910829321transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBOO.I.C.G.H.G.
21.799.659.4At2g29750817525UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
21.499.666.3At5g40510834049-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOAO.I.C.G.H.G.
21.499.612.9At2g48090819421unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
20.599.689.7At5g42600834267MRN1 (MARNERAL SYNTHASE)Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.O.I.C.G.H.G.
20.599.682.1At4g23420828441short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
20.399.6306.6At2g01520814681MLP328 (MLP-LIKE PROTEIN 328)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
19.799.620.6At5g47960834847ATRABA4CEncodes a small molecular weight g-protein.O.I.C.G.H.G.
19.599.672.2At2g44380819045DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;PMOO.I.C.G.H.G.
19.499.628.4At3g45650823707NAXT1 (NITRATE EXCRETION TRANSPORTER1)Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.O.I.C.G.H.G.
19.299.6285.4At4g21850828273methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
19.199.666.7At1g21100838706O-methyltransferase, putativeF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
18.799.5161.2At3g02910821189-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAO.I.C.G.H.G.
18.699.526.4At2g02680814797DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.C.G.H.G.
18.699.523.8At1g70990843438proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVAO.I.C.G.H.G.
18.299.5385.7At1g70850843422MLP34 (MLP-LIKE PROTEIN 34)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
18.099.545.2At1g10480837588ZFP5 (ZINC FINGER PROTEIN 5)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
17.999.555.1At4g18340827561glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
17.899.516.8At1g66440842962DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
17.599.5302.8At2g01530814682MLP329 (MLP-LIKE PROTEIN 329)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
17.599.5100.0At2g29995817550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.599.519.5At1g35330840422zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
17.499.528.7At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOO.I.C.G.H.G.
17.399.581.5At3g52360824401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.399.550.3At5g42500834257disease resistance-responsive family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.C.G.H.G.
17.199.5167.9At3g21770821731peroxidase 30 (PER30) (P30) (PRXR9)F:transferase activity, transferring glycosyl groups, peroxidase activity;P:response to oxidative stress;C:cell wall, nucleus, cytoplasm, plant-type cell wall;PFOBMO.I.C.G.H.G.
17.099.550.9At1g141208379712-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
17.099.57.4At1g73310843665scpl4 (serine carboxypeptidase-like 4)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
16.999.5222.2At4g21830828271methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
16.899.557.5At5g42590834266CYP71A16putative cytochrome P450O.I.C.G.H.G.
16.799.561.0At2g32270817787ZIP3A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.O.I.C.G.H.G.
15.999.5535.0At1g73330843668ATDR4encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.O.I.C.G.H.G.
15.999.5276.6At4g15390827205transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
15.999.577.0At4g33110829448coclaurine N-methyltransferase, putativeF:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMAO.I.C.G.H.G.
15.999.533.7At1g23120838920major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
15.999.512.5At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVO.I.C.G.H.G.
15.199.4197.5At3g20370821582meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFO.I.C.G.H.G.
15.199.424.7At3g12750820457ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.O.I.C.G.H.G.
15.099.424.0At5g09800830840U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFO.I.C.G.H.G.
14.799.423.1At1g65510842863unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
14.699.467.2At1g24280839044G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.O.I.C.G.H.G.
14.699.462.7At3g24100821996-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
14.099.413.6At1g50520841474CYP705A27member of CYP705AO.I.C.G.H.G.
13.999.4230.1At3g53980824565protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
13.999.427.6At5g62920836412ARR6 (RESPONSE REGULATOR 6)Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.O.I.C.G.H.G.
13.899.458.5At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.C.G.H.G.
13.799.471.3At4g39660830120AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,O.I.C.G.H.G.
13.499.4236.4At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.O.I.C.G.H.G.
13.399.4294.5At4g11650826770ATOSM34 (osmotin 34)osmotin-like proteinO.I.C.G.H.G.
13.399.474.8At5g20885832212zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVO.I.C.G.H.G.



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