CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM231198

Assay name wild-type at T0.5, biological rep3

GSE experiment GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
362.7 100.0 117.1 At3g02610 820709 acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
250.1 100.0 226.3 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
200.1 100.0 66.2 At2g28850 817434 CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3) member of CYP710A O.I. C.G. H.G.
164.9 100.0 69.4 At2g48080 819420 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
160.8 99.9 144.9 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
155.4 99.9 98.9 At4g13860 827020 glycine-rich RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
147.0 99.9 19.3 At4g37850 829941 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
140.5 99.9 76.4 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family O.I. C.G. H.G.
123.9 99.9 220.7 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. O.I. C.G. H.G.
121.0 99.9 33.1 At1g60450 842340 AtGolS7 (Arabidopsis thaliana galactinol synthase 7) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
116.2 99.9 76.8 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
113.0 99.9 317.4 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
113.0 99.9 77.1 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
107.1 99.9 158.0 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
105.3 99.9 90.4 At1g78050 844140 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
102.3 99.9 60.6 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
98.8 99.9 139.5 At5g42590 834266 CYP71A16 putative cytochrome P450 O.I. C.G. H.G.
92.4 99.9 198.6 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
86.1 99.9 22.2 At1g35625 840462 peptidase/ protein binding / zinc ion binding F:peptidase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
84.2 99.9 207.7 At4g22610 828357 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
80.6 99.9 117.0 At4g18340 827561 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
77.1 99.9 35.1 At1g03410 838763 2A6 F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFM O.I. C.G. H.G.
73.4 99.9 24.0 At2g34180 817979 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) Encodes CBL-interacting protein kinase 13 (CIPK13). O.I. C.G. H.G.
71.5 99.9 45.6 At4g32950 829432 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
64.7 99.8 107.8 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
63.6 99.8 32.5 At5g61290 836250 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
60.3 99.8 31.7 At1g52250 - - O.I. C.G. H.G.
57.0 99.8 145.9 At4g33110 829448 coclaurine N-methyltransferase, putative F:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMA O.I. C.G. H.G.
55.7 99.8 219.4 At3g59930 825163 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
55.5 99.8 60.9 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
52.1 99.8 218.5 At5g07460 830637 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness. O.I. C.G. H.G.
50.8 99.8 63.8 At5g47950 834846 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
49.5 99.8 224.7 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.
49.0 99.8 28.7 At4g15330 827199 CYP705A1 a member of the cytochrome P450 family O.I. C.G. H.G.
48.5 99.8 43.2 At5g09800 830840 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF O.I. C.G. H.G.
48.3 99.8 88.0 At1g22550 838861 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
47.8 99.8 109.0 At5g35940 833584 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM O.I. C.G. H.G.
46.9 99.8 38.3 At5g20550 832177 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
46.3 99.8 41.7 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.
44.8 99.8 253.8 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.8 99.8 40.5 At1g65510 842863 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
44.4 99.8 45.8 At4g13420 826973 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels. O.I. C.G. H.G.
40.4 99.8 515.2 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. C.G. H.G.
39.6 99.8 255.9 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
39.4 99.8 65.0 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
38.9 99.8 11.3 At1g73310 843665 scpl4 (serine carboxypeptidase-like 4) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
38.3 99.8 17.3 At2g48090 819421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
37.9 99.8 156.0 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
36.5 99.7 47.4 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
35.8 99.7 204.9 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
35.1 99.7 104.1 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. O.I. C.G. H.G.
35.0 99.7 106.6 At3g07350 819923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
33.4 99.7 49.2 At4g13290 826959 CYP71A19 putative cytochrome P450 O.I. C.G. H.G.
33.3 99.7 25.6 At3g46700 823823 UDP-glycosyltransferase/ transferase, transferring glycosyl groups F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
33.1 99.7 134.1 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. C.G. H.G.
32.2 99.7 36.6 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.5 99.7 15.3 At2g02610 814790 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
31.2 99.7 124.7 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
30.8 99.7 31.3 At1g50560 841477 CYP705A25 member of CYP705A O.I. C.G. H.G.
30.0 99.7 379.2 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
29.9 99.7 107.2 At3g52360 824401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
29.3 99.7 72.8 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
29.1 99.7 164.5 At3g49940 824156 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.4 99.7 276.6 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
28.2 99.7 34.3 At3g45650 823707 NAXT1 (NITRATE EXCRETION TRANSPORTER1) Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots. O.I. C.G. H.G.
28.1 99.7 100.9 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF O.I. C.G. H.G.
27.7 99.7 21.0 At1g66440 842962 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
27.4 99.7 393.7 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
27.2 99.7 9.2 At1g73280 843662 scpl3 (serine carboxypeptidase-like 3) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
26.7 99.7 93.7 At4g23420 828441 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
26.6 99.7 132.0 At4g05390 825887 ATRFNR1 (ROOT FNR 1) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. O.I. C.G. H.G.
24.9 99.6 66.6 At3g18560 821387 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
24.1 99.6 97.1 At1g17190 838290 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
23.8 99.6 14.1 At1g73300 843664 scpl2 (serine carboxypeptidase-like 2) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
23.2 99.6 26.7 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
23.1 99.6 64.9 At1g16370 838207 OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA O.I. C.G. H.G.
22.6 99.6 25.4 At1g49160 841339 WNK7 Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its O.I. C.G. H.G.
22.6 99.6 15.8 At2g36090 818182 F-box family protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
22.5 99.6 119.0 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB O.I. C.G. H.G.
22.3 99.6 13.9 At4g15270 827193 glucosyltransferase-related F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P O.I. C.G. H.G.
22.1 99.6 29.6 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. O.I. C.G. H.G.
22.1 99.6 13.3 At3g20960 821646 CYP705A33 member of CYP705A O.I. C.G. H.G.
21.9 99.6 67.2 At5g40510 834049 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA O.I. C.G. H.G.
21.8 99.6 39.7 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
21.7 99.6 58.7 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. C.G. H.G.
21.6 99.6 54.1 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
21.5 99.6 59.1 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
21.3 99.6 58.6 At3g50900 824254 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.3 99.6 32.1 At1g33700 840261 catalytic/ glucosylceramidase F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BPMOA O.I. C.G. H.G.
21.3 99.6 30.0 At5g28610 832960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB O.I. C.G. H.G.
21.1 99.6 312.3 At2g01520 814681 MLP328 (MLP-LIKE PROTEIN 328) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
21.1 99.6 21.3 At5g47960 834847 ATRABA4C Encodes a small molecular weight g-protein. O.I. C.G. H.G.
20.9 99.6 69.4 At4g31910 829321 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO O.I. C.G. H.G.
20.9 99.6 57.0 At5g06300 830518 carboxy-lyase F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA O.I. C.G. H.G.
20.7 99.6 68.0 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. O.I. C.G. H.G.
20.7 99.6 39.5 At3g47210 823874 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane;PM O.I. C.G. H.G.
20.6 99.6 22.4 At5g20540 832176 ATBRXL4 (BREVIS RADIX-LIKE 4) Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. O.I. C.G. H.G.
20.5 99.6 48.7 At3g16690 820921 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
20.4 99.6 155.1 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
20.3 99.6 155.4 At5g03380 831854 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:unknown;PMOBFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
362.7	100.0	117.1	At3g02610	820709	acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
250.1	100.0	226.3	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
200.1	100.0	66.2	At2g28850	817434	CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3)	member of CYP710A	O.I.	C.G.	H.G.
164.9	100.0	69.4	At2g48080	819420	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
160.8	99.9	144.9	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
155.4	99.9	98.9	At4g13860	827020	glycine-rich RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
147.0	99.9	19.3	At4g37850	829941	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
140.5	99.9	76.4	At5g42580	834265	CYP705A12	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
123.9	99.9	220.7	At5g42600	834267	MRN1 (MARNERAL SYNTHASE)	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.	O.I.	C.G.	H.G.
121.0	99.9	33.1	At1g60450	842340	AtGolS7 (Arabidopsis thaliana galactinol synthase 7)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
116.2	99.9	76.8	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
113.0	99.9	317.4	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
113.0	99.9	77.1	At2g35270	818094	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
107.1	99.9	158.0	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
105.3	99.9	90.4	At1g78050	844140	PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE)	F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
102.3	99.9	60.6	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
98.8	99.9	139.5	At5g42590	834266	CYP71A16	putative cytochrome P450	O.I.	C.G.	H.G.
92.4	99.9	198.6	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
86.1	99.9	22.2	At1g35625	840462	peptidase/ protein binding / zinc ion binding	F:peptidase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
84.2	99.9	207.7	At4g22610	828357	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
80.6	99.9	117.0	At4g18340	827561	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
77.1	99.9	35.1	At1g03410	838763	2A6	F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
73.4	99.9	24.0	At2g34180	817979	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)	Encodes CBL-interacting protein kinase 13 (CIPK13).	O.I.	C.G.	H.G.
71.5	99.9	45.6	At4g32950	829432	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
64.7	99.8	107.8	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
63.6	99.8	32.5	At5g61290	836250	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
60.3	99.8	31.7	At1g52250		-	-	O.I.	C.G.	H.G.
57.0	99.8	145.9	At4g33110	829448	coclaurine N-methyltransferase, putative	F:cyclopropane-fatty-acyl-phospholipid synthase activity, (S)-coclaurine-N-methyltransferase activity;P:lipid biosynthetic process;C:plasma membrane;OBPFMA	O.I.	C.G.	H.G.
55.7	99.8	219.4	At3g59930	825163	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
55.5	99.8	60.9	At5g10210	830885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.1	99.8	218.5	At5g07460	830637	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.	O.I.	C.G.	H.G.
50.8	99.8	63.8	At5g47950	834846	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
49.5	99.8	224.7	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.
49.0	99.8	28.7	At4g15330	827199	CYP705A1	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
48.5	99.8	43.2	At5g09800	830840	U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF	O.I.	C.G.	H.G.
48.3	99.8	88.0	At1g22550	838861	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
47.8	99.8	109.0	At5g35940	833584	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBM	O.I.	C.G.	H.G.
46.9	99.8	38.3	At5g20550	832177	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
46.3	99.8	41.7	At2g02680	814797	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.
44.8	99.8	253.8	At5g23830	832448	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.8	99.8	40.5	At1g65510	842863	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
44.4	99.8	45.8	At4g13420	826973	HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)	Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.	O.I.	C.G.	H.G.
40.4	99.8	515.2	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	C.G.	H.G.
39.6	99.8	255.9	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
39.4	99.8	65.0	At5g47980	834849	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
38.9	99.8	11.3	At1g73310	843665	scpl4 (serine carboxypeptidase-like 4)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
38.3	99.8	17.3	At2g48090	819421	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
37.9	99.8	156.0	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
36.5	99.7	47.4	At2g42350	818836	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
35.8	99.7	204.9	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
35.1	99.7	104.1	At1g24280	839044	G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.	O.I.	C.G.	H.G.
35.0	99.7	106.6	At3g07350	819923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
33.4	99.7	49.2	At4g13290	826959	CYP71A19	putative cytochrome P450	O.I.	C.G.	H.G.
33.3	99.7	25.6	At3g46700	823823	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
33.1	99.7	134.1	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	C.G.	H.G.
32.2	99.7	36.6	At5g19970	832119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.5	99.7	15.3	At2g02610	814790	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
31.2	99.7	124.7	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
30.8	99.7	31.3	At1g50560	841477	CYP705A25	member of CYP705A	O.I.	C.G.	H.G.
30.0	99.7	379.2	At4g15390	827205	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
29.9	99.7	107.2	At3g52360	824401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
29.3	99.7	72.8	At4g17800	827502	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
29.1	99.7	164.5	At3g49940	824156	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.4	99.7	276.6	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
28.2	99.7	34.3	At3g45650	823707	NAXT1 (NITRATE EXCRETION TRANSPORTER1)	Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.	O.I.	C.G.	H.G.
28.1	99.7	100.9	At1g13300	837890	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF	O.I.	C.G.	H.G.
27.7	99.7	21.0	At1g66440	842962	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
27.4	99.7	393.7	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
27.2	99.7	9.2	At1g73280	843662	scpl3 (serine carboxypeptidase-like 3)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
26.7	99.7	93.7	At4g23420	828441	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
26.6	99.7	132.0	At4g05390	825887	ATRFNR1 (ROOT FNR 1)	Encodes a root-type ferredoxin:NADP(H) oxidoreductase.	O.I.	C.G.	H.G.
24.9	99.6	66.6	At3g18560	821387	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
24.1	99.6	97.1	At1g17190	838290	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
23.8	99.6	14.1	At1g73300	843664	scpl2 (serine carboxypeptidase-like 2)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
23.2	99.6	26.7	At5g52670	835344	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.1	99.6	64.9	At1g16370	838207	OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA	O.I.	C.G.	H.G.
22.6	99.6	25.4	At1g49160	841339	WNK7	Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its	O.I.	C.G.	H.G.
22.6	99.6	15.8	At2g36090	818182	F-box family protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
22.5	99.6	119.0	At5g19890	832111	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB	O.I.	C.G.	H.G.
22.3	99.6	13.9	At4g15270	827193	glucosyltransferase-related	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.1	99.6	29.6	At2g35000	818064	zinc finger (C3HC4-type RING finger) family protein	E3 ligase-like protein induced by chitin oligomers.	O.I.	C.G.	H.G.
22.1	99.6	13.3	At3g20960	821646	CYP705A33	member of CYP705A	O.I.	C.G.	H.G.
21.9	99.6	67.2	At5g40510	834049	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBPOA	O.I.	C.G.	H.G.
21.8	99.6	39.7	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
21.7	99.6	58.7	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	C.G.	H.G.
21.6	99.6	54.1	At5g38030	833782	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
21.5	99.6	59.1	At2g29750	817525	UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
21.3	99.6	58.6	At3g50900	824254	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.3	99.6	32.1	At1g33700	840261	catalytic/ glucosylceramidase	F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BPMOA	O.I.	C.G.	H.G.
21.3	99.6	30.0	At5g28610	832960	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB	O.I.	C.G.	H.G.
21.1	99.6	312.3	At2g01520	814681	MLP328 (MLP-LIKE PROTEIN 328)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.1	99.6	21.3	At5g47960	834847	ATRABA4C	Encodes a small molecular weight g-protein.	O.I.	C.G.	H.G.
20.9	99.6	69.4	At4g31910	829321	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:nucleus;PFBO	O.I.	C.G.	H.G.
20.9	99.6	57.0	At5g06300	830518	carboxy-lyase	F:carboxy-lyase activity;P:metabolic process;C:unknown;BOPFMA	O.I.	C.G.	H.G.
20.7	99.6	68.0	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	O.I.	C.G.	H.G.
20.7	99.6	39.5	At3g47210	823874	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane;PM	O.I.	C.G.	H.G.
20.6	99.6	22.4	At5g20540	832176	ATBRXL4 (BREVIS RADIX-LIKE 4)	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	O.I.	C.G.	H.G.
20.5	99.6	48.7	At3g16690	820921	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
20.4	99.6	155.1	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
20.3	99.6	155.4	At5g03380	831854	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:unknown;PMOBFA	O.I.	C.G.	H.G.

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GSM ID	GSM231198
Assay name	wild-type at T0.5, biological rep3
GSE experiment	GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h

Microarray experiments to specifically-expressed genes

GSM ID GSM231198 Assay name wild-type at T0.5, biological rep3 GSE experiment GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h

GSM ID GSM231198

Assay name wild-type at T0.5, biological rep3

GSE experiment GSE9148: Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h