CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226553

Assay name Slice11JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
258.9 100.0 139.7 At1g64160 842720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
205.7 100.0 105.6 At3g50400 824204 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
197.4 100.0 169.0 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
184.3 100.0 151.4 At5g13900 831237 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
175.7 100.0 47.8 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
154.1 99.9 86.1 At1g05450 837046 protease inhibitor/seed storage/lipid transfer protein (LTP)-related Encodes a Protease inhibitor/seed storage/LTP family protein O.I. C.G. H.G.
145.7 99.9 185.7 At2g21100 816645 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
139.1 99.9 45.9 At4g08040 826317 ACS11 encodes an aminotransferase that belongs to ACC synthase gene family structurally O.I. C.G. H.G.
97.7 99.9 195.7 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
95.0 99.9 145.5 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. O.I. C.G. H.G.
86.4 99.9 64.0 At1g51920 841620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
81.2 99.9 49.9 At1g18140 838393 LAC1 (Laccase 1) putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). O.I. C.G. H.G.
78.1 99.9 58.4 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
76.4 99.9 197.8 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
74.5 99.9 43.7 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV O.I. C.G. H.G.
67.8 99.9 44.4 At2g35770 818149 scpl28 (serine carboxypeptidase-like 28) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
67.7 99.9 51.6 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. C.G. H.G.
64.9 99.8 276.9 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
64.6 99.8 104.2 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
61.9 99.8 44.9 At4g25220 828625 transporter, putative F:transporter activity;P:transport;C:unknown;BOFMAP O.I. C.G. H.G.
61.7 99.8 229.9 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
59.7 99.8 48.8 At1g54540 841896 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.2 99.8 27.9 At5g08250 830721 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:cellular_component unknown;MPFBOAV O.I. C.G. H.G.
57.3 99.8 291.9 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. O.I. C.G. H.G.
54.8 99.8 165.2 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
54.0 99.8 259.3 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein O.I. C.G. H.G.
53.5 99.8 68.0 At4g13235 826940 EDA21 (embryo sac development arrest 21) Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
52.2 99.8 543.2 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
52.2 99.8 215.7 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
50.9 99.8 226.6 At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF O.I. C.G. H.G.
50.6 99.8 29.0 At2g19060 816423 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
50.5 99.8 67.2 At3g14680 820696 CYP72A14 putative cytochrome P450 O.I. C.G. H.G.
50.2 99.8 175.1 At4g36430 829795 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM O.I. C.G. H.G.
50.1 99.8 34.3 At3g61390 825311 U-box domain-containing protein F:unknown;P:unknown;C:unknown;OMFPBAV O.I. C.G. H.G.
49.4 99.8 49.2 At1g20380 838626 prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;OBMPAF O.I. C.G. H.G.
46.9 99.8 139.8 At3g27200 822339 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF O.I. C.G. H.G.
45.5 99.8 250.5 At4g02270 828083 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
44.7 99.8 69.2 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
43.4 99.8 94.8 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
42.9 99.8 30.4 At5g22530 832314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
42.5 99.8 97.1 At4g40090 830172 AGP3 (arabinogalactan-protein 3) F:unknown;P:multicellular organismal development;C:endomembrane system;P O.I. C.G. H.G.
41.8 99.8 49.9 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.7 99.8 131.2 At3g06420 819816 ATG8H (autophagy 8h) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. C.G. H.G.
41.3 99.8 21.1 At1g21360 838735 GLTP2 (glycolipid transfer protein 2) F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;P O.I. C.G. H.G.
40.9 99.8 213.0 At1g17180 838289 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
40.2 99.8 147.5 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.1 99.8 57.9 At1g65610 842872 KOR2 F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
39.1 99.8 90.0 At5g12880 831128 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
36.6 99.7 128.0 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
36.4 99.7 23.7 At4g29800 829102 PLP8 (PATATIN-LIKE PROTEIN 8) F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM O.I. C.G. H.G.
36.2 99.7 65.6 At3g26980 822315 MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR) F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PF O.I. C.G. H.G.
35.6 99.7 76.6 At5g25810 832650 tny (TINY) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. O.I. C.G. H.G.
34.5 99.7 29.0 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
34.4 99.7 53.9 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
34.2 99.7 512.6 At4g37410 829895 CYP81F4 member of CYP81F O.I. C.G. H.G.
32.9 99.7 174.5 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
32.6 99.7 44.9 At1g08340 837354 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBA O.I. C.G. H.G.
32.4 99.7 45.3 At1g21120 838708 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO O.I. C.G. H.G.
32.3 99.7 22.8 At4g21230 827872 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
32.2 99.7 18.4 At3g20110 821554 CYP705A20 member of CYP705A O.I. C.G. H.G.
32.0 99.7 329.2 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
31.2 99.7 68.7 At2g25160 817054 CYP82F1 member of CYP82F O.I. C.G. H.G.
31.1 99.7 118.0 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
31.0 99.7 41.8 At5g05390 830421 LAC12 (laccase 12) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
29.0 99.7 13.1 At1g05310 837030 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA O.I. C.G. H.G.
28.9 99.7 152.0 At5g25940 832663 early nodulin-related F:molecular_function unknown;P:unknown;C:mitochondrion;P O.I. C.G. H.G.
28.7 99.7 34.9 At2g16760 816177 - F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
28.6 99.7 177.2 At5g01040 831877 LAC8 (laccase 8) putative laccase, knockout mutant showed early flowering O.I. C.G. H.G.
28.3 99.7 74.3 At3g50260 824188 CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
28.2 99.7 98.2 At3g12700 820452 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO O.I. C.G. H.G.
28.0 99.7 7.7 At1g55640 842013 PRA1.G1 (PRENYLATED RAB ACCEPTOR 1.G1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOF O.I. C.G. H.G.
27.7 99.7 225.0 At1g48850 841307 EMB1144 (embryo defective 1144) F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPM O.I. C.G. H.G.
27.4 99.7 11.7 At1g15030 838068 - Encodes a Cysteine-rich peptide (CRP) family protein O.I. C.G. H.G.
27.2 99.7 64.3 At1g51420 841567 SPP1 (SUCROSE-PHOSPHATASE 1) F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO O.I. C.G. H.G.
27.1 99.7 157.6 At3g14690 820697 CYP72A15 putative cytochrome P450 O.I. C.G. H.G.
27.1 99.7 63.1 At2g44300 819038 lipid transfer protein-related F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
26.9 99.7 103.0 At5g54490 835537 PBP1 (PINOID-BINDING PROTEIN 1) Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels. O.I. C.G. H.G.
26.7 99.7 54.8 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
26.5 99.7 20.4 At2g04500 814991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM O.I. C.G. H.G.
26.0 99.7 81.5 At1g22885 838895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.9 99.7 425.4 At3g22600 821832 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;POM O.I. C.G. H.G.
25.7 99.7 82.4 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA O.I. C.G. H.G.
25.4 99.6 159.9 At4g38540 830011 monooxygenase, putative (MO2) F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM O.I. C.G. H.G.
25.2 99.6 149.3 At1g30870 839971 cationic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
25.2 99.6 15.2 At5g36110 833607 CYP716A1 member of CYP716A O.I. C.G. H.G.
25.0 99.6 504.4 At1g22410 838847 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF O.I. C.G. H.G.
24.7 99.6 8.8 At3g09240 820080 protein kinase-related F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
24.6 99.6 176.6 At3g09270 820083 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
24.6 99.6 172.4 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
23.9 99.6 30.3 At4g39070 830062 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POM O.I. C.G. H.G.
23.5 99.6 19.1 At3g55090 824675 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV O.I. C.G. H.G.
23.4 99.6 72.7 At1g70300 843366 KUP6 potassium transporter O.I. C.G. H.G.
23.0 99.6 474.3 At2g44790 819088 UCC2 (UCLACYANIN 2) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. O.I. C.G. H.G.
22.9 99.6 574.7 At2g23120 816844 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
22.9 99.6 36.4 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.4 99.6 122.4 At5g43580 834378 serine-type endopeptidase inhibitor Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
22.4 99.6 40.0 At5g17350 831601 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
22.3 99.6 19.1 At1g70460 843382 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA O.I. C.G. H.G.
22.2 99.6 18.2 At3g20860 821634 ATNEK5 (NIMA-RELATED KINASE5) Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. O.I. C.G. H.G.
22.0 99.6 14.4 At2g35730 818143 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:endomembrane system;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
258.9	100.0	139.7	At1g64160	842720	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
205.7	100.0	105.6	At3g50400	824204	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
197.4	100.0	169.0	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
184.3	100.0	151.4	At5g13900	831237	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
175.7	100.0	47.8	At1g03700	839428	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
154.1	99.9	86.1	At1g05450	837046	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	Encodes a Protease inhibitor/seed storage/LTP family protein	O.I.	C.G.	H.G.
145.7	99.9	185.7	At2g21100	816645	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
139.1	99.9	45.9	At4g08040	826317	ACS11	encodes an aminotransferase that belongs to ACC synthase gene family structurally	O.I.	C.G.	H.G.
97.7	99.9	195.7	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
95.0	99.9	145.5	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	O.I.	C.G.	H.G.
86.4	99.9	64.0	At1g51920	841620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
81.2	99.9	49.9	At1g18140	838393	LAC1 (Laccase 1)	putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).	O.I.	C.G.	H.G.
78.1	99.9	58.4	At5g58010	835913	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
76.4	99.9	197.8	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
74.5	99.9	43.7	At5g19410	832061	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV	O.I.	C.G.	H.G.
67.8	99.9	44.4	At2g35770	818149	scpl28 (serine carboxypeptidase-like 28)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
67.7	99.9	51.6	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	C.G.	H.G.
64.9	99.8	276.9	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
64.6	99.8	104.2	At5g35190	833473	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
61.9	99.8	44.9	At4g25220	828625	transporter, putative	F:transporter activity;P:transport;C:unknown;BOFMAP	O.I.	C.G.	H.G.
61.7	99.8	229.9	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
59.7	99.8	48.8	At1g54540	841896	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.2	99.8	27.9	At5g08250	830721	cytochrome P450 family protein	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:cellular_component unknown;MPFBOAV	O.I.	C.G.	H.G.
57.3	99.8	291.9	At3g54590	824624	ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)	Encodes a hydroxyproline-rich glycoprotein.	O.I.	C.G.	H.G.
54.8	99.8	165.2	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
54.0	99.8	259.3	At3g62680	825442	PRP3 (PROLINE-RICH PROTEIN 3)	Proline-rich protein	O.I.	C.G.	H.G.
53.5	99.8	68.0	At4g13235	826940	EDA21 (embryo sac development arrest 21)	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
52.2	99.8	543.2	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
52.2	99.8	215.7	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.9	99.8	226.6	At4g01700	828131	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF	O.I.	C.G.	H.G.
50.6	99.8	29.0	At2g19060	816423	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
50.5	99.8	67.2	At3g14680	820696	CYP72A14	putative cytochrome P450	O.I.	C.G.	H.G.
50.2	99.8	175.1	At4g36430	829795	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM	O.I.	C.G.	H.G.
50.1	99.8	34.3	At3g61390	825311	U-box domain-containing protein	F:unknown;P:unknown;C:unknown;OMFPBAV	O.I.	C.G.	H.G.
49.4	99.8	49.2	At1g20380	838626	prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative	F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;OBMPAF	O.I.	C.G.	H.G.
46.9	99.8	139.8	At3g27200	822339	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF	O.I.	C.G.	H.G.
45.5	99.8	250.5	At4g02270	828083	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
44.7	99.8	69.2	At5g47980	834849	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
43.4	99.8	94.8	At5g09520	830811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
42.9	99.8	30.4	At5g22530	832314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
42.5	99.8	97.1	At4g40090	830172	AGP3 (arabinogalactan-protein 3)	F:unknown;P:multicellular organismal development;C:endomembrane system;P	O.I.	C.G.	H.G.
41.8	99.8	49.9	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.7	99.8	131.2	At3g06420	819816	ATG8H (autophagy 8h)	F:microtubule binding;P:autophagy;C:unknown;MOPFV	O.I.	C.G.	H.G.
41.3	99.8	21.1	At1g21360	838735	GLTP2 (glycolipid transfer protein 2)	F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;P	O.I.	C.G.	H.G.
40.9	99.8	213.0	At1g17180	838289	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
40.2	99.8	147.5	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.1	99.8	57.9	At1g65610	842872	KOR2	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
39.1	99.8	90.0	At5g12880	831128	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
36.6	99.7	128.0	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
36.4	99.7	23.7	At4g29800	829102	PLP8 (PATATIN-LIKE PROTEIN 8)	F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM	O.I.	C.G.	H.G.
36.2	99.7	65.6	At3g26980	822315	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
35.6	99.7	76.6	At5g25810	832650	tny (TINY)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.	O.I.	C.G.	H.G.
34.5	99.7	29.0	At4g30320	829155	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
34.4	99.7	53.9	At4g05200	825868	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
34.2	99.7	512.6	At4g37410	829895	CYP81F4	member of CYP81F	O.I.	C.G.	H.G.
32.9	99.7	174.5	At2g24980	817037	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
32.6	99.7	44.9	At1g08340	837354	rac GTPase activating protein, putative	F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBA	O.I.	C.G.	H.G.
32.4	99.7	45.3	At1g21120	838708	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO	O.I.	C.G.	H.G.
32.3	99.7	22.8	At4g21230	827872	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
32.2	99.7	18.4	At3g20110	821554	CYP705A20	member of CYP705A	O.I.	C.G.	H.G.
32.0	99.7	329.2	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
31.2	99.7	68.7	At2g25160	817054	CYP82F1	member of CYP82F	O.I.	C.G.	H.G.
31.1	99.7	118.0	At1g02360	837724	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
31.0	99.7	41.8	At5g05390	830421	LAC12 (laccase 12)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
29.0	99.7	13.1	At1g05310	837030	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;MPOBFVA	O.I.	C.G.	H.G.
28.9	99.7	152.0	At5g25940	832663	early nodulin-related	F:molecular_function unknown;P:unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
28.7	99.7	34.9	At2g16760	816177	-	F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
28.6	99.7	177.2	At5g01040	831877	LAC8 (laccase 8)	putative laccase, knockout mutant showed early flowering	O.I.	C.G.	H.G.
28.3	99.7	74.3	At3g50260	824188	CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
28.2	99.7	98.2	At3g12700	820452	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
28.0	99.7	7.7	At1g55640	842013	PRA1.G1 (PRENYLATED RAB ACCEPTOR 1.G1)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOF	O.I.	C.G.	H.G.
27.7	99.7	225.0	At1g48850	841307	EMB1144 (embryo defective 1144)	F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPM	O.I.	C.G.	H.G.
27.4	99.7	11.7	At1g15030	838068	-	Encodes a Cysteine-rich peptide (CRP) family protein	O.I.	C.G.	H.G.
27.2	99.7	64.3	At1g51420	841567	SPP1 (SUCROSE-PHOSPHATASE 1)	F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:sucrose biosynthetic process, metabolic process;C:plasma membrane;BPO	O.I.	C.G.	H.G.
27.1	99.7	157.6	At3g14690	820697	CYP72A15	putative cytochrome P450	O.I.	C.G.	H.G.
27.1	99.7	63.1	At2g44300	819038	lipid transfer protein-related	F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
26.9	99.7	103.0	At5g54490	835537	PBP1 (PINOID-BINDING PROTEIN 1)	Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels.	O.I.	C.G.	H.G.
26.7	99.7	54.8	At4g00680	828037	ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
26.5	99.7	20.4	At2g04500	814991	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM	O.I.	C.G.	H.G.
26.0	99.7	81.5	At1g22885	838895	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.9	99.7	425.4	At3g22600	821832	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;POM	O.I.	C.G.	H.G.
25.7	99.7	82.4	At4g08410	826400	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA	O.I.	C.G.	H.G.
25.4	99.6	159.9	At4g38540	830011	monooxygenase, putative (MO2)	F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM	O.I.	C.G.	H.G.
25.2	99.6	149.3	At1g30870	839971	cationic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
25.2	99.6	15.2	At5g36110	833607	CYP716A1	member of CYP716A	O.I.	C.G.	H.G.
25.0	99.6	504.4	At1g22410	838847	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF	O.I.	C.G.	H.G.
24.7	99.6	8.8	At3g09240	820080	protein kinase-related	F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
24.6	99.6	176.6	At3g09270	820083	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
24.6	99.6	172.4	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
23.9	99.6	30.3	At4g39070	830062	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POM	O.I.	C.G.	H.G.
23.5	99.6	19.1	At3g55090	824675	ATPase, coupled to transmembrane movement of substances	F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
23.4	99.6	72.7	At1g70300	843366	KUP6	potassium transporter	O.I.	C.G.	H.G.
23.0	99.6	474.3	At2g44790	819088	UCC2 (UCLACYANIN 2)	Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	O.I.	C.G.	H.G.
22.9	99.6	574.7	At2g23120	816844	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
22.9	99.6	36.4	At2g34910	818056	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.4	99.6	122.4	At5g43580	834378	serine-type endopeptidase inhibitor	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
22.4	99.6	40.0	At5g17350	831601	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.3	99.6	19.1	At1g70460	843382	protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA	O.I.	C.G.	H.G.
22.2	99.6	18.2	At3g20860	821634	ATNEK5 (NIMA-RELATED KINASE5)	Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	O.I.	C.G.	H.G.
22.0	99.6	14.4	At2g35730	818143	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:endomembrane system;P	O.I.	C.G.	H.G.

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GSM ID	GSM226553
Assay name	Slice11JW
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226553 Assay name Slice11JW GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226553

Assay name Slice11JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function