CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226549

Assay name Slice7JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
307.8 100.0 40.0 At5g40860 834087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
305.4 100.0 94.0 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
248.2 100.0 187.1 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
171.5 100.0 32.3 At5g23030 832367 TET12 (TETRASPANIN12) Member of TETRASPANIN family O.I. C.G. H.G.
157.8 99.9 354.1 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
157.5 99.9 65.1 At5g24880 832557 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
142.9 99.9 71.6 At3g18170 821344 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
138.6 99.9 124.8 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
128.5 99.9 92.1 At3g50300 824192 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
118.8 99.9 76.6 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
107.8 99.9 40.7 At4g29800 829102 PLP8 (PATATIN-LIKE PROTEIN 8) F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM O.I. C.G. H.G.
94.3 99.9 288.8 At1g30870 839971 cationic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
87.0 99.9 87.9 At1g23760 838987 JP630 Encodes aromatic rich glycoprotein JP630. O.I. C.G. H.G.
86.8 99.9 671.5 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). O.I. C.G. H.G.
86.6 99.9 27.3 At2g18450 816359 SDH1-2 Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex . O.I. C.G. H.G.
84.0 99.9 122.5 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
83.9 99.9 33.9 At4g02810 828170 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
83.8 99.9 41.8 At5g54020 835485 zinc ion binding F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.
83.8 99.9 28.3 At1g30850 839969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
83.4 99.9 89.1 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. O.I. C.G. H.G.
77.8 99.9 105.5 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
72.6 99.9 105.9 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
71.6 99.9 63.7 At2g41970 818797 protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
71.5 99.9 23.0 At3g07070 819893 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
71.3 99.9 50.4 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
70.2 99.9 55.4 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
68.6 99.9 150.4 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
68.2 99.9 25.9 At5g43230 834341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB O.I. C.G. H.G.
68.0 99.9 106.8 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
64.9 99.8 33.9 At3g07900 819981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
64.5 99.8 103.5 At5g04960 830378 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
64.0 99.8 157.7 At2g12400 815712 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POM O.I. C.G. H.G.
62.2 99.8 23.6 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
61.7 99.8 10.9 At1g16440 838214 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA O.I. C.G. H.G.
61.2 99.8 60.7 At2g16980 816201 tetracycline transporter F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF O.I. C.G. H.G.
59.6 99.8 41.6 At2g15350 816027 FUT10 (FUCOSYLTRANSFERASE 10) member of Glycosyltransferase Family- 37 O.I. C.G. H.G.
57.0 99.8 35.0 At1g57560 842131 AtMYB50 (myb domain protein 50) Member of the R2R3 factor gene family. O.I. C.G. H.G.
55.7 99.8 90.3 At3g58710 825040 WRKY69 member of WRKY Transcription Factor; Group II-e O.I. C.G. H.G.
55.5 99.8 124.3 At3g26690 822281 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates. O.I. C.G. H.G.
54.3 99.8 75.3 At1g12560 837813 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. O.I. C.G. H.G.
53.9 99.8 22.8 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
53.7 99.8 24.0 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO O.I. C.G. H.G.
53.1 99.8 69.3 At5g49320 834992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
52.8 99.8 546.3 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
52.8 99.8 29.7 At4g14380 827082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
52.7 99.8 27.8 At4g25560 828661 AtMYB18 (myb domain protein 18) Member of the R2R3 factor gene family. O.I. C.G. H.G.
52.3 99.8 39.3 At1g07795 837294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
52.2 99.8 90.6 At1g62980 842601 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
52.0 99.8 50.5 At3g12090 820383 TET6 (TETRASPANIN6) Member of TETRASPANIN family O.I. C.G. H.G.
51.9 99.8 53.8 At1g74055 843745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
49.0 99.8 243.4 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
48.9 99.8 19.7 At3g12540 820433 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA O.I. C.G. H.G.
48.8 99.8 21.8 At4g03330 827970 SYP123 (SYNTAXIN OF PLANTS 123) member of SYP12 Gene Family O.I. C.G. H.G.
47.0 99.8 99.3 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. O.I. C.G. H.G.
46.6 99.8 26.6 At4g08040 826317 ACS11 encodes an aminotransferase that belongs to ACC synthase gene family structurally O.I. C.G. H.G.
46.2 99.8 11.6 At1g62320 842530 early-responsive to dehydration protein-related / ERD protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
46.0 99.8 33.5 At4g30320 829155 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
43.9 99.8 439.2 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
43.8 99.8 49.4 At2g07695 815371 cytochrome c oxidase subunit II, putative F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP O.I. C.G. H.G.
43.6 99.8 96.5 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
42.8 99.8 53.9 At5g57540 835858 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
42.4 99.8 126.0 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
41.8 99.8 37.9 At2g18800 816395 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
41.2 99.8 19.6 At3g61300 825302 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
40.6 99.8 43.6 At1g56660 842121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
40.4 99.8 156.2 At4g13660 827000 PRR2 (PINORESINOL REDUCTASE 2) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. O.I. C.G. H.G.
39.7 99.8 33.0 At1g62840 842584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.9 99.8 52.9 At5g05160 830398 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVA O.I. C.G. H.G.
38.7 99.8 25.2 At1g70460 843382 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA O.I. C.G. H.G.
37.8 99.8 38.8 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. O.I. C.G. H.G.
37.3 99.7 307.9 At3g44190 823541 pyridine nucleotide-disulphide oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMP O.I. C.G. H.G.
37.1 99.7 484.8 At4g26970 828805 aconitate hydratase/ copper ion binding F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP O.I. C.G. H.G.
36.8 99.7 729.3 At2g23120 816844 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
36.8 99.7 74.3 At5g50720 835144 ATHVA22E Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. O.I. C.G. H.G.
35.8 99.7 45.5 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.8 99.7 9.9 At4g27290 828837 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:sugar binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
35.1 99.7 66.6 At5g03160 831917 ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. O.I. C.G. H.G.
35.0 99.7 46.4 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
34.9 99.7 53.7 At5g05790 830464 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
34.9 99.7 36.7 At5g38700 833860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
34.6 99.7 811.2 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
34.4 99.7 586.2 At2g22170 816751 lipid-associated family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO O.I. C.G. H.G.
34.4 99.7 23.2 At2g03720 814899 MRH6 (morphogenesis of root hair 6) Involved in root hair development O.I. C.G. H.G.
34.3 99.7 36.2 At4g39070 830062 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POM O.I. C.G. H.G.
34.2 99.7 54.6 At4g36410 829793 UBC17 (UBIQUITIN-CONJUGATING ENZYME 17) ubiquitin-conjugating enzyme O.I. C.G. H.G.
33.9 99.7 249.4 At3g19390 821473 cysteine proteinase, putative / thiol protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
33.8 99.7 435.5 At5g65020 836626 ANNAT2 (Annexin Arabidopsis 2) Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides. O.I. C.G. H.G.
33.7 99.7 215.0 At2g07698 815374 ATP synthase alpha chain, mitochondrial, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF O.I. C.G. H.G.
33.5 99.7 93.1 At5g25890 832658 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene. O.I. C.G. H.G.
33.2 99.7 203.2 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein O.I. C.G. H.G.
33.2 99.7 26.9 At5g04310 830310 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
32.9 99.7 31.9 At1g30990 839985 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
32.9 99.7 20.9 At2g42850 818885 CYP718 member of CYP718 O.I. C.G. H.G.
32.5 99.7 59.5 At1g54120 841852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.0 99.7 15.5 At1g70450 843381 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
31.8 99.7 127.7 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA O.I. C.G. H.G.
31.5 99.7 83.2 At5g40980 834100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
31.4 99.7 65.1 At3g18200 821347 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
31.3 99.7 135.7 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
30.4 99.7 204.9 At4g02270 828083 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
307.8	100.0	40.0	At5g40860	834087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
305.4	100.0	94.0	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
248.2	100.0	187.1	At1g01750	839281	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
171.5	100.0	32.3	At5g23030	832367	TET12 (TETRASPANIN12)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
157.8	99.9	354.1	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
157.5	99.9	65.1	At5g24880	832557	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
142.9	99.9	71.6	At3g18170	821344	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
138.6	99.9	124.8	At4g00680	828037	ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
128.5	99.9	92.1	At3g50300	824192	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
118.8	99.9	76.6	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
107.8	99.9	40.7	At4g29800	829102	PLP8 (PATATIN-LIKE PROTEIN 8)	F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM	O.I.	C.G.	H.G.
94.3	99.9	288.8	At1g30870	839971	cationic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
87.0	99.9	87.9	At1g23760	838987	JP630	Encodes aromatic rich glycoprotein JP630.	O.I.	C.G.	H.G.
86.8	99.9	671.5	At5g56540	835755	AGP14 (ARABINOGALACTAN PROTEIN 14)	Encodes arabinogalactan protein (AGP14).	O.I.	C.G.	H.G.
86.6	99.9	27.3	At2g18450	816359	SDH1-2	Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex .	O.I.	C.G.	H.G.
84.0	99.9	122.5	At2g47540	819367	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
83.9	99.9	33.9	At4g02810	828170	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
83.8	99.9	41.8	At5g54020	835485	zinc ion binding	F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.
83.8	99.9	28.3	At1g30850	839969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
83.4	99.9	89.1	At5g49270	834987	SHV2 (SHAVEN 2)	Involved in successfully establishing tip growth in root hairs.	O.I.	C.G.	H.G.
77.8	99.9	105.5	At4g09990	826590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
72.6	99.9	105.9	At3g24670	822063	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
71.6	99.9	63.7	At2g41970	818797	protein kinase, putative	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
71.5	99.9	23.0	At3g07070	819893	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
71.3	99.9	50.4	At4g33730	829515	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
70.2	99.9	55.4	At5g58010	835913	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
68.6	99.9	150.4	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
68.2	99.9	25.9	At5g43230	834341	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
68.0	99.9	106.8	At5g35190	833473	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
64.9	99.8	33.9	At3g07900	819981	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
64.5	99.8	103.5	At5g04960	830378	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
64.0	99.8	157.7	At2g12400	815712	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POM	O.I.	C.G.	H.G.
62.2	99.8	23.6	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
61.7	99.8	10.9	At1g16440	838214	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVA	O.I.	C.G.	H.G.
61.2	99.8	60.7	At2g16980	816201	tetracycline transporter	F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF	O.I.	C.G.	H.G.
59.6	99.8	41.6	At2g15350	816027	FUT10 (FUCOSYLTRANSFERASE 10)	member of Glycosyltransferase Family- 37	O.I.	C.G.	H.G.
57.0	99.8	35.0	At1g57560	842131	AtMYB50 (myb domain protein 50)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
55.7	99.8	90.3	At3g58710	825040	WRKY69	member of WRKY Transcription Factor; Group II-e	O.I.	C.G.	H.G.
55.5	99.8	124.3	At3g26690	822281	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	O.I.	C.G.	H.G.
54.3	99.8	75.3	At1g12560	837813	ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)	Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.	O.I.	C.G.	H.G.
53.9	99.8	22.8	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
53.7	99.8	24.0	At1g27740	839667	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO	O.I.	C.G.	H.G.
53.1	99.8	69.3	At5g49320	834992	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.8	99.8	546.3	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
52.8	99.8	29.7	At4g14380	827082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
52.7	99.8	27.8	At4g25560	828661	AtMYB18 (myb domain protein 18)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
52.3	99.8	39.3	At1g07795	837294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
52.2	99.8	90.6	At1g62980	842601	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
52.0	99.8	50.5	At3g12090	820383	TET6 (TETRASPANIN6)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
51.9	99.8	53.8	At1g74055	843745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
49.0	99.8	243.4	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
48.9	99.8	19.7	At3g12540	820433	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA	O.I.	C.G.	H.G.
48.8	99.8	21.8	At4g03330	827970	SYP123 (SYNTAXIN OF PLANTS 123)	member of SYP12 Gene Family	O.I.	C.G.	H.G.
47.0	99.8	99.3	At3g50660	824229	DWF4 (DWARF 4)	Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	O.I.	C.G.	H.G.
46.6	99.8	26.6	At4g08040	826317	ACS11	encodes an aminotransferase that belongs to ACC synthase gene family structurally	O.I.	C.G.	H.G.
46.2	99.8	11.6	At1g62320	842530	early-responsive to dehydration protein-related / ERD protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
46.0	99.8	33.5	At4g30320	829155	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
43.9	99.8	439.2	At5g46890	834734	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
43.8	99.8	49.4	At2g07695	815371	cytochrome c oxidase subunit II, putative	F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP	O.I.	C.G.	H.G.
43.6	99.8	96.5	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
42.8	99.8	53.9	At5g57540	835858	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
42.4	99.8	126.0	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
41.8	99.8	37.9	At2g18800	816395	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
41.2	99.8	19.6	At3g61300	825302	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
40.6	99.8	43.6	At1g56660	842121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
40.4	99.8	156.2	At4g13660	827000	PRR2 (PINORESINOL REDUCTASE 2)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
39.7	99.8	33.0	At1g62840	842584	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.9	99.8	52.9	At5g05160	830398	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
38.7	99.8	25.2	At1g70460	843382	protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA	O.I.	C.G.	H.G.
37.8	99.8	38.8	At4g34580	829610	COW1 (CAN OF WORMS1)	Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.	O.I.	C.G.	H.G.
37.3	99.7	307.9	At3g44190	823541	pyridine nucleotide-disulphide oxidoreductase family protein	F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMP	O.I.	C.G.	H.G.
37.1	99.7	484.8	At4g26970	828805	aconitate hydratase/ copper ion binding	F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP	O.I.	C.G.	H.G.
36.8	99.7	729.3	At2g23120	816844	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
36.8	99.7	74.3	At5g50720	835144	ATHVA22E	Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	O.I.	C.G.	H.G.
35.8	99.7	45.5	At2g34910	818056	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.8	99.7	9.9	At4g27290	828837	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:sugar binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
35.1	99.7	66.6	At5g03160	831917	ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK)	J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.	O.I.	C.G.	H.G.
35.0	99.7	46.4	At5g22410	832302	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
34.9	99.7	53.7	At5g05790	830464	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
34.9	99.7	36.7	At5g38700	833860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
34.6	99.7	811.2	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
34.4	99.7	586.2	At2g22170	816751	lipid-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO	O.I.	C.G.	H.G.
34.4	99.7	23.2	At2g03720	814899	MRH6 (morphogenesis of root hair 6)	Involved in root hair development	O.I.	C.G.	H.G.
34.3	99.7	36.2	At4g39070	830062	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POM	O.I.	C.G.	H.G.
34.2	99.7	54.6	At4g36410	829793	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	ubiquitin-conjugating enzyme	O.I.	C.G.	H.G.
33.9	99.7	249.4	At3g19390	821473	cysteine proteinase, putative / thiol protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
33.8	99.7	435.5	At5g65020	836626	ANNAT2 (Annexin Arabidopsis 2)	Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.	O.I.	C.G.	H.G.
33.7	99.7	215.0	At2g07698	815374	ATP synthase alpha chain, mitochondrial, putative	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF	O.I.	C.G.	H.G.
33.5	99.7	93.1	At5g25890	832658	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.	O.I.	C.G.	H.G.
33.2	99.7	203.2	At3g62680	825442	PRP3 (PROLINE-RICH PROTEIN 3)	Proline-rich protein	O.I.	C.G.	H.G.
33.2	99.7	26.9	At5g04310	830310	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
32.9	99.7	31.9	At1g30990	839985	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.9	99.7	20.9	At2g42850	818885	CYP718	member of CYP718	O.I.	C.G.	H.G.
32.5	99.7	59.5	At1g54120	841852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.0	99.7	15.5	At1g70450	843381	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
31.8	99.7	127.7	At2g07751	815347	NADH-ubiquinone oxidoreductase chain 3, putative	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA	O.I.	C.G.	H.G.
31.5	99.7	83.2	At5g40980	834100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
31.4	99.7	65.1	At3g18200	821347	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
31.3	99.7	135.7	At2g22860	816817	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
30.4	99.7	204.9	At4g02270	828083	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.

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GSM ID	GSM226549
Assay name	Slice7JW
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226549 Assay name Slice7JW GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226549

Assay name Slice7JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function