CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226548

Assay name Slice6JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
610.3 100.0 78.4 At4g27590 828869 copper-binding protein-related F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
224.5 100.0 80.6 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
178.1 100.0 258.2 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
169.8 100.0 154.8 At1g01750 839281 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
152.3 99.9 1483.2 At2g23120 816844 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
150.8 99.9 346.2 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
124.2 99.9 2114.0 At1g20450 838633 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. O.I. C.G. H.G.
112.8 99.9 141.9 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
102.8 99.9 76.5 At5g58690 835983 phosphoinositide-specific phospholipase C family protein F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
102.5 99.9 98.7 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. O.I. C.G. H.G.
101.6 99.9 726.9 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). O.I. C.G. H.G.
93.9 99.9 225.5 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
92.8 99.9 140.7 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
85.7 99.9 28.8 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
84.2 99.9 53.0 At2g31260 817683 APG9 (autophagy 9) Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence. O.I. C.G. H.G.
82.7 99.9 250.0 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
79.6 99.9 330.5 At2g07698 815374 ATP synthase alpha chain, mitochondrial, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF O.I. C.G. H.G.
77.5 99.9 27.1 At2g35730 818143 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:endomembrane system;P O.I. C.G. H.G.
76.9 99.9 127.0 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. O.I. C.G. H.G.
74.8 99.9 1192.7 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
74.0 99.9 570.4 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
70.8 99.9 16.7 At5g38790 833870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
70.1 99.9 79.9 At2g07725 815398 60S ribosomal protein L5 (RPL5) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO O.I. C.G. H.G.
68.8 99.9 158.3 At2g35880 818161 - F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
62.3 99.8 201.3 At2g34070 817968 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
58.0 99.8 112.9 At5g40980 834100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
56.9 99.8 56.3 At5g02420 831836 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
55.6 99.8 181.5 At1g19835 838571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
55.6 99.8 124.5 At3g26690 822281 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates. O.I. C.G. H.G.
54.4 99.8 1661.9 At1g54410 841883 dehydrin family protein F:molecular_function unknown;P:response to water, response to stress;C:chloroplast;OMPFB O.I. C.G. H.G.
50.1 99.8 200.1 At5g25940 832663 early nodulin-related F:molecular_function unknown;P:unknown;C:mitochondrion;P O.I. C.G. H.G.
49.7 99.8 38.4 At1g72240 843556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
48.8 99.8 49.1 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
48.5 99.8 554.6 At4g26970 828805 aconitate hydratase/ copper ion binding F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP O.I. C.G. H.G.
47.4 99.8 85.6 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
46.3 99.8 20.4 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
46.1 99.8 15.2 At1g15030 838068 - Encodes a Cysteine-rich peptide (CRP) family protein O.I. C.G. H.G.
44.8 99.8 524.8 At2g45820 819190 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:plasma membrane;OMPBFVA O.I. C.G. H.G.
44.4 99.8 50.0 At5g17910 831659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA O.I. C.G. H.G.
44.0 99.8 74.6 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA O.I. C.G. H.G.
42.8 99.8 41.9 At5g16490 831510 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly. O.I. C.G. H.G.
40.9 99.8 10.6 At5g46115 834653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.8 99.8 48.6 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.2 99.8 25.1 At2g04500 814991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM O.I. C.G. H.G.
39.4 99.8 69.5 At4g36890 829842 IRX14 (irregular xylem 14) The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation. O.I. C.G. H.G.
39.2 99.8 141.7 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA O.I. C.G. H.G.
39.2 99.8 46.7 At1g74055 843745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
38.9 99.8 128.2 At5g20660 832189 24 kDa vacuolar protein, putative F:peptidase activity;P:proteolysis;C:unknown;MBFOPA O.I. C.G. H.G.
38.6 99.8 565.7 At1g62480 842545 vacuolar calcium-binding protein-related F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
38.0 99.8 89.8 At5g54440 835532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
37.6 99.7 161.7 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. O.I. C.G. H.G.
37.5 99.7 32.2 At4g27480 828857 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process, N-terminal protein myristoylation;C:endomembrane system, membrane;MPBVO O.I. C.G. H.G.
37.0 99.7 26.5 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
35.9 99.7 365.8 At5g64130 836534 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
35.6 99.7 195.1 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
34.1 99.7 267.6 At1g21310 838728 ATEXT3 (EXTENSIN 3) Encodes extensin 3. O.I. C.G. H.G.
33.8 99.7 8.8 At2g35870 - - O.I. C.G. H.G.
33.6 99.7 169.9 At5g57785 835887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.5 99.7 236.3 At2g22425 816774 peptidase F:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPO O.I. C.G. H.G.
32.2 99.7 17.5 At1g30850 839969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.0 99.7 28.5 At3g59710 825140 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
31.9 99.7 945.1 At1g20440 838632 COR47 (COLD-REGULATED 47) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. O.I. C.G. H.G.
31.0 99.7 12.8 At5g45970 834637 ARAC2 (ARABIDOPSIS RAC-LIKE 2) Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family. O.I. C.G. H.G.
30.3 99.7 37.7 At1g56660 842121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
29.7 99.7 66.0 At3g58710 825040 WRKY69 member of WRKY Transcription Factor; Group II-e O.I. C.G. H.G.
29.4 99.7 571.7 At3g10860 820256 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;P O.I. C.G. H.G.
28.9 99.7 181.1 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
28.6 99.7 21.1 At1g68430 843172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
28.4 99.7 17.5 At1g27740 839667 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO O.I. C.G. H.G.
28.2 99.7 335.0 At1g04040 839325 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOM O.I. C.G. H.G.
27.7 99.7 155.7 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.8 99.7 405.1 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
26.4 99.7 242.7 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
26.3 99.7 17.3 At5g23350 832399 GRAM domain-containing protein / ABA-responsive protein-related F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
24.5 99.6 47.0 At5g58450 835958 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
23.9 99.6 79.2 At5g45190 834555 cyclin family protein Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV). O.I. C.G. H.G.
23.5 99.6 41.9 At5g16730 831536 - F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
23.5 99.6 11.1 At5g40860 834087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
23.4 99.6 24.2 At3g57360 824903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
23.1 99.6 181.2 At1g14450 838007 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF O.I. C.G. H.G.
22.9 99.6 43.2 At4g30160 829139 VLN4 (ARABIDOPSIS THALIANA VILLIN 4) Arabidopsis thaliana VILLIN4 O.I. C.G. H.G.
22.8 99.6 253.2 At2g31490 817707 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P O.I. C.G. H.G.
22.8 99.6 43.7 At1g65610 842872 KOR2 F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
22.6 99.6 208.9 At3g62400 825413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.6 99.6 62.1 At3g62020 825375 GLP10 (GERMIN-LIKE PROTEIN 10) germin-like protein (GLP10) O.I. C.G. H.G.
22.1 99.6 12.2 At5g57080 835812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.0 99.6 31.0 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
21.9 99.6 162.7 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
20.9 99.6 14.7 At2g04680 815011 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
20.8 99.6 185.6 At1g77330 844069 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) O.I. C.G. H.G.
20.8 99.6 7.9 At5g54030 835486 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
20.6 99.6 27.6 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM O.I. C.G. H.G.
20.5 99.6 110.0 At5g26740 832714 unknown protein F:unknown;P:unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
20.1 99.6 11.1 At1g53340 841769 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM O.I. C.G. H.G.
20.1 99.6 10.2 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.9 99.6 48.7 At5g07920 830686 DGK1 (DIACYLGLYCEROL KINASE1) diacylglycerol kinase O.I. C.G. H.G.
19.8 99.6 104.5 At3g60860 825257 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB O.I. C.G. H.G.
19.6 99.6 246.7 At4g29735 829095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
19.5 99.6 10.0 At5g49800 835043 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBF O.I. C.G. H.G.
19.1 99.6 17.7 At1g70460 843382 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
610.3	100.0	78.4	At4g27590	828869	copper-binding protein-related	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
224.5	100.0	80.6	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
178.1	100.0	258.2	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
169.8	100.0	154.8	At1g01750	839281	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
152.3	99.9	1483.2	At2g23120	816844	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
150.8	99.9	346.2	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
124.2	99.9	2114.0	At1g20450	838633	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	O.I.	C.G.	H.G.
112.8	99.9	141.9	At2g47540	819367	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
102.8	99.9	76.5	At5g58690	835983	phosphoinositide-specific phospholipase C family protein	F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity, calcium ion binding;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
102.5	99.9	98.7	At5g49270	834987	SHV2 (SHAVEN 2)	Involved in successfully establishing tip growth in root hairs.	O.I.	C.G.	H.G.
101.6	99.9	726.9	At5g56540	835755	AGP14 (ARABINOGALACTAN PROTEIN 14)	Encodes arabinogalactan protein (AGP14).	O.I.	C.G.	H.G.
93.9	99.9	225.5	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
92.8	99.9	140.7	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
85.7	99.9	28.8	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
84.2	99.9	53.0	At2g31260	817683	APG9 (autophagy 9)	Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence.	O.I.	C.G.	H.G.
82.7	99.9	250.0	At1g67330	843054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
79.6	99.9	330.5	At2g07698	815374	ATP synthase alpha chain, mitochondrial, putative	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF	O.I.	C.G.	H.G.
77.5	99.9	27.1	At2g35730	818143	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:endomembrane system;P	O.I.	C.G.	H.G.
76.9	99.9	127.0	At3g50660	824229	DWF4 (DWARF 4)	Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	O.I.	C.G.	H.G.
74.8	99.9	1192.7	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
74.0	99.9	570.4	At5g46890	834734	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
70.8	99.9	16.7	At5g38790	833870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
70.1	99.9	79.9	At2g07725	815398	60S ribosomal protein L5 (RPL5)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO	O.I.	C.G.	H.G.
68.8	99.9	158.3	At2g35880	818161	-	F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
62.3	99.8	201.3	At2g34070	817968	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
58.0	99.8	112.9	At5g40980	834100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
56.9	99.8	56.3	At5g02420	831836	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.6	99.8	181.5	At1g19835	838571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
55.6	99.8	124.5	At3g26690	822281	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	O.I.	C.G.	H.G.
54.4	99.8	1661.9	At1g54410	841883	dehydrin family protein	F:molecular_function unknown;P:response to water, response to stress;C:chloroplast;OMPFB	O.I.	C.G.	H.G.
50.1	99.8	200.1	At5g25940	832663	early nodulin-related	F:molecular_function unknown;P:unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
49.7	99.8	38.4	At1g72240	843556	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
48.8	99.8	49.1	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
48.5	99.8	554.6	At4g26970	828805	aconitate hydratase/ copper ion binding	F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP	O.I.	C.G.	H.G.
47.4	99.8	85.6	At3g24670	822063	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
46.3	99.8	20.4	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
46.1	99.8	15.2	At1g15030	838068	-	Encodes a Cysteine-rich peptide (CRP) family protein	O.I.	C.G.	H.G.
44.8	99.8	524.8	At2g45820	819190	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:plasma membrane;OMPBFVA	O.I.	C.G.	H.G.
44.4	99.8	50.0	At5g17910	831659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA	O.I.	C.G.	H.G.
44.0	99.8	74.6	At3g05920	819761	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA	O.I.	C.G.	H.G.
42.8	99.8	41.9	At5g16490	831510	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly.	O.I.	C.G.	H.G.
40.9	99.8	10.6	At5g46115	834653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.8	99.8	48.6	At2g34910	818056	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.2	99.8	25.1	At2g04500	814991	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM	O.I.	C.G.	H.G.
39.4	99.8	69.5	At4g36890	829842	IRX14 (irregular xylem 14)	The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.	O.I.	C.G.	H.G.
39.2	99.8	141.7	At2g07751	815347	NADH-ubiquinone oxidoreductase chain 3, putative	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA	O.I.	C.G.	H.G.
39.2	99.8	46.7	At1g74055	843745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
38.9	99.8	128.2	At5g20660	832189	24 kDa vacuolar protein, putative	F:peptidase activity;P:proteolysis;C:unknown;MBFOPA	O.I.	C.G.	H.G.
38.6	99.8	565.7	At1g62480	842545	vacuolar calcium-binding protein-related	F:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
38.0	99.8	89.8	At5g54440	835532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
37.6	99.7	161.7	At5g24800	832549	BZIP9 (BASIC LEUCINE ZIPPER 9)	Encodes bZIP protein BZO2H2.	O.I.	C.G.	H.G.
37.5	99.7	32.2	At4g27480	828857	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process, N-terminal protein myristoylation;C:endomembrane system, membrane;MPBVO	O.I.	C.G.	H.G.
37.0	99.7	26.5	At3g46270	823772	receptor protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
35.9	99.7	365.8	At5g64130	836534	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
35.6	99.7	195.1	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
34.1	99.7	267.6	At1g21310	838728	ATEXT3 (EXTENSIN 3)	Encodes extensin 3.	O.I.	C.G.	H.G.
33.8	99.7	8.8	At2g35870		-	-	O.I.	C.G.	H.G.
33.6	99.7	169.9	At5g57785	835887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.5	99.7	236.3	At2g22425	816774	peptidase	F:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPO	O.I.	C.G.	H.G.
32.2	99.7	17.5	At1g30850	839969	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.0	99.7	28.5	At3g59710	825140	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
31.9	99.7	945.1	At1g20440	838632	COR47 (COLD-REGULATED 47)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.	O.I.	C.G.	H.G.
31.0	99.7	12.8	At5g45970	834637	ARAC2 (ARABIDOPSIS RAC-LIKE 2)	Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.	O.I.	C.G.	H.G.
30.3	99.7	37.7	At1g56660	842121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
29.7	99.7	66.0	At3g58710	825040	WRKY69	member of WRKY Transcription Factor; Group II-e	O.I.	C.G.	H.G.
29.4	99.7	571.7	At3g10860	820256	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;P	O.I.	C.G.	H.G.
28.9	99.7	181.1	At2g42570	818857	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
28.6	99.7	21.1	At1g68430	843172	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
28.4	99.7	17.5	At1g27740	839667	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFO	O.I.	C.G.	H.G.
28.2	99.7	335.0	At1g04040	839325	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOM	O.I.	C.G.	H.G.
27.7	99.7	155.7	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.8	99.7	405.1	At4g12510	826863	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
26.4	99.7	242.7	At5g53250	835406	AGP22 (ARABINOGALACTAN PROTEIN 22)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
26.3	99.7	17.3	At5g23350	832399	GRAM domain-containing protein / ABA-responsive protein-related	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
24.5	99.6	47.0	At5g58450	835958	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
23.9	99.6	79.2	At5g45190	834555	cyclin family protein	Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).	O.I.	C.G.	H.G.
23.5	99.6	41.9	At5g16730	831536	-	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
23.5	99.6	11.1	At5g40860	834087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
23.4	99.6	24.2	At3g57360	824903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
23.1	99.6	181.2	At1g14450	838007	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF	O.I.	C.G.	H.G.
22.9	99.6	43.2	At4g30160	829139	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	Arabidopsis thaliana VILLIN4	O.I.	C.G.	H.G.
22.8	99.6	253.2	At2g31490	817707	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;P	O.I.	C.G.	H.G.
22.8	99.6	43.7	At1g65610	842872	KOR2	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
22.6	99.6	208.9	At3g62400	825413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.6	99.6	62.1	At3g62020	825375	GLP10 (GERMIN-LIKE PROTEIN 10)	germin-like protein (GLP10)	O.I.	C.G.	H.G.
22.1	99.6	12.2	At5g57080	835812	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.0	99.6	31.0	At5g58010	835913	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
21.9	99.6	162.7	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
20.9	99.6	14.7	At2g04680	815011	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
20.8	99.6	185.6	At1g77330	844069	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)	O.I.	C.G.	H.G.
20.8	99.6	7.9	At5g54030	835486	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
20.6	99.6	27.6	At3g49840	824146	unknown protein	F:unknown;P:unknown;C:endomembrane system;PBM	O.I.	C.G.	H.G.
20.5	99.6	110.0	At5g26740	832714	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
20.1	99.6	11.1	At1g53340	841769	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:intracellular;POM	O.I.	C.G.	H.G.
20.1	99.6	10.2	At1g01130	839359	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.9	99.6	48.7	At5g07920	830686	DGK1 (DIACYLGLYCEROL KINASE1)	diacylglycerol kinase	O.I.	C.G.	H.G.
19.8	99.6	104.5	At3g60860	825257	guanine nucleotide exchange family protein	F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB	O.I.	C.G.	H.G.
19.6	99.6	246.7	At4g29735	829095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
19.5	99.6	10.0	At5g49800	835043	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBF	O.I.	C.G.	H.G.
19.1	99.6	17.7	At1g70460	843382	protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA	O.I.	C.G.	H.G.

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GSM ID	GSM226548
Assay name	Slice6JW
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226548 Assay name Slice6JW GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226548

Assay name Slice6JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function