CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226547

Assay name Slice5JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
419.2 100.0 65.0 At4g27590 828869 copper-binding protein-related F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
368.3 100.0 371.3 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
333.7 100.0 98.3 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
246.1 100.0 299.4 At2g35880 818161 - F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
134.1 99.9 471.1 At1g77330 844069 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) O.I. C.G. H.G.
131.1 99.9 165.8 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. O.I. C.G. H.G.
104.3 99.9 288.0 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
96.8 99.9 29.5 At4g09100 826488 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
86.5 99.9 181.8 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
83.3 99.9 55.1 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
82.9 99.9 86.9 At2g07725 815398 60S ribosomal protein L5 (RPL5) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO O.I. C.G. H.G.
82.7 99.9 132.5 At5g54440 835532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
79.6 99.9 17.7 At5g38790 833870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
74.2 99.9 406.6 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
70.4 99.9 34.0 At5g21050 832229 - F:unknown;P:unknown;C:chloroplast;MPO O.I. C.G. H.G.
67.9 99.9 277.8 At2g42570 818857 unknown protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
67.8 99.9 27.8 At5g23350 832399 GRAM domain-containing protein / ABA-responsive protein-related F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
66.6 99.8 302.3 At2g07698 815374 ATP synthase alpha chain, mitochondrial, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF O.I. C.G. H.G.
66.3 99.8 49.4 At5g04820 830361 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
58.6 99.8 250.5 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
56.8 99.8 44.1 At4g30410 829164 transcription factor F:transcription factor activity;P:unknown;C:unknown;PO O.I. C.G. H.G.
55.3 99.8 189.7 At2g34070 817968 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
52.7 99.8 509.7 At4g27500 828859 PPI1 (PROTON PUMP INTERACTOR 1) interacts with H+-ATPase, and regulates its activity O.I. C.G. H.G.
52.7 99.8 41.8 At5g48175 834870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
51.1 99.8 173.7 At5g26740 832714 unknown protein F:unknown;P:unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
51.1 99.8 10.3 At1g43040 840903 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
51.0 99.8 74.3 At5g24580 832529 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
49.4 99.8 969.2 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
48.6 99.8 40.8 At5g05570 830440 transducin family protein / WD-40 repeat family protein F:methyltransferase activity, nucleotide binding, nucleic acid binding;P:vesicle-mediated transport, methylation;C:plasma membrane;MFPOB O.I. C.G. H.G.
48.3 99.8 79.0 At2g47270 819340 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
48.2 99.8 88.0 At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV O.I. C.G. H.G.
46.8 99.8 99.9 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.7 99.8 109.3 At1g72500 843582 inter-alpha-trypsin inhibitor heavy chain-related F:unknown;P:unknown;C:plasma membrane;MBOPFA O.I. C.G. H.G.
45.5 99.8 1077.4 At4g39200 830075 40S ribosomal protein S25 (RPS25E) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA O.I. C.G. H.G.
45.5 99.8 296.5 At3g62400 825413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.1 99.8 419.3 At1g04040 839325 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOM O.I. C.G. H.G.
41.4 99.8 43.2 At1g23060 838914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV O.I. C.G. H.G.
39.6 99.8 33.1 At4g27480 828857 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process, N-terminal protein myristoylation;C:endomembrane system, membrane;MPBVO O.I. C.G. H.G.
39.3 99.8 152.5 At1g75780 843911 TUB1 beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses O.I. C.G. H.G.
38.3 99.8 377.9 At5g64130 836534 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
38.2 99.8 143.7 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.6 99.7 46.0 At5g17910 831659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA O.I. C.G. H.G.
36.7 99.7 81.0 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
36.1 99.7 22.1 At2g34670 818032 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOFVB O.I. C.G. H.G.
35.1 99.7 121.8 At5g20660 832189 24 kDa vacuolar protein, putative F:peptidase activity;P:proteolysis;C:unknown;MBFOPA O.I. C.G. H.G.
35.1 99.7 70.3 At1g13590 837920 ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR) Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. O.I. C.G. H.G.
33.8 99.7 581.0 At2g22170 816751 lipid-associated family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO O.I. C.G. H.G.
33.6 99.7 418.0 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). O.I. C.G. H.G.
33.4 99.7 22.9 At2g04500 814991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM O.I. C.G. H.G.
33.3 99.7 43.1 At1g74055 843745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
33.0 99.7 18.9 At1g66450 842963 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
32.7 99.7 621.7 At1g76200 843953 unknown protein F:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;FPO O.I. C.G. H.G.
32.0 99.7 23.1 At1g59940 842288 ARR3 (RESPONSE REGULATOR 3) Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. O.I. C.G. H.G.
30.4 99.7 23.6 At5g35670 833540 iqd33 (IQ-domain 33) F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOF O.I. C.G. H.G.
29.4 99.7 61.0 At5g03160 831917 ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. O.I. C.G. H.G.
28.6 99.7 18.5 At3g60930 825264 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
27.7 99.7 144.8 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
27.7 99.7 40.8 At4g30900 829214 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BOFPAM O.I. C.G. H.G.
27.3 99.7 19.7 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
26.3 99.7 16.6 At3g20110 821554 CYP705A20 member of CYP705A O.I. C.G. H.G.
25.7 99.7 20.7 At1g52250 - - O.I. C.G. H.G.
25.4 99.6 61.7 At2g48010 819413 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) receptor-like serine/threonine kinase (RKF3) O.I. C.G. H.G.
25.3 99.6 215.6 At3g19390 821473 cysteine proteinase, putative / thiol protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
24.8 99.6 83.2 At3g26690 822281 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates. O.I. C.G. H.G.
24.4 99.6 159.7 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
24.4 99.6 9.3 At4g35200 829673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
24.4 99.6 9.0 At2g02620 814791 DC1 domain-containing protein / PHD finger protein-related F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM O.I. C.G. H.G.
24.2 99.6 391.7 At4g26970 828805 aconitate hydratase/ copper ion binding F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP O.I. C.G. H.G.
24.2 99.6 385.7 At2g45820 819190 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:plasma membrane;OMPBFVA O.I. C.G. H.G.
23.9 99.6 304.9 At4g30170 829140 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
23.9 99.6 44.5 At5g42860 834297 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMB O.I. C.G. H.G.
23.9 99.6 9.1 At5g51420 835216 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:unknown;C:unknown;PBO O.I. C.G. H.G.
23.8 99.6 32.6 At5g27000 832758 ATK4 (ARABIDOPSIS THALIANA KINESIN 4) Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner. O.I. C.G. H.G.
23.4 99.6 13.1 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
23.3 99.6 109.4 At2g07751 815347 NADH-ubiquinone oxidoreductase chain 3, putative F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA O.I. C.G. H.G.
22.7 99.6 34.7 At5g14000 831248 anac084 (Arabidopsis NAC domain containing protein 84) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
22.3 99.6 53.2 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA O.I. C.G. H.G.
22.0 99.6 106.1 At5g04470 830326 SIM (SIAMESE) Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo. O.I. C.G. H.G.
21.9 99.6 562.4 At2g23120 816844 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
21.9 99.6 11.8 At3g01900 821263 CYP94B2 member of CYP94B O.I. C.G. H.G.
21.8 99.6 100.5 At5g16910 831554 CSLD2 (CELLULOSE-SYNTHASE LIKE D2) encodes a gene similar to cellulose synthase. Located in golgi membranes. O.I. C.G. H.G.
21.7 99.6 175.5 At1g14450 838007 unknown protein F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF O.I. C.G. H.G.
21.5 99.6 14.9 At2g04680 815011 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
21.4 99.6 104.0 At5g06700 830559 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
21.4 99.6 6.9 At3g50120 824174 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.3 99.6 34.4 At2g07695 815371 cytochrome c oxidase subunit II, putative F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP O.I. C.G. H.G.
20.8 99.6 6.9 At2g35870 - - O.I. C.G. H.G.
20.4 99.6 29.0 At4g36790 829832 transporter-related F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPV O.I. C.G. H.G.
20.3 99.6 31.0 At5g24500 832521 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPF O.I. C.G. H.G.
20.3 99.6 16.7 At1g64700 842778 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
20.1 99.6 421.5 At5g02450 831907 60S ribosomal protein L36 (RPL36C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFP O.I. C.G. H.G.
19.9 99.6 99.5 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
19.9 99.6 92.3 At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB O.I. C.G. H.G.
19.7 99.6 36.8 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
19.4 99.6 75.9 At5g41080 834110 glycerophosphoryl diester phosphodiesterase family protein F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
19.3 99.6 76.7 At4g16660 827367 heat shock protein 70, putative / HSP70, putative F:ATP binding;P:unknown;C:plasma membrane, chloroplast;OBMFPAV O.I. C.G. H.G.
19.1 99.6 27.1 At5g38700 833860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
18.9 99.5 383.3 At4g34710 829623 ADC2 (ARGININE DECARBOXYLASE 2) encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1. O.I. C.G. H.G.
18.6 99.5 37.1 At2g39550 818540 PGGT-I encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. O.I. C.G. H.G.
18.6 99.5 24.7 At5g49680 835031 - - O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
419.2	100.0	65.0	At4g27590	828869	copper-binding protein-related	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
368.3	100.0	371.3	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
333.7	100.0	98.3	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
246.1	100.0	299.4	At2g35880	818161	-	F:molecular_function unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
134.1	99.9	471.1	At1g77330	844069	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)	O.I.	C.G.	H.G.
131.1	99.9	165.8	At3g50660	824229	DWF4 (DWARF 4)	Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	O.I.	C.G.	H.G.
104.3	99.9	288.0	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
96.8	99.9	29.5	At4g09100	826488	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
86.5	99.9	181.8	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
83.3	99.9	55.1	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
82.9	99.9	86.9	At2g07725	815398	60S ribosomal protein L5 (RPL5)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PO	O.I.	C.G.	H.G.
82.7	99.9	132.5	At5g54440	835532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
79.6	99.9	17.7	At5g38790	833870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
74.2	99.9	406.6	At5g53250	835406	AGP22 (ARABINOGALACTAN PROTEIN 22)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
70.4	99.9	34.0	At5g21050	832229	-	F:unknown;P:unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
67.9	99.9	277.8	At2g42570	818857	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
67.8	99.9	27.8	At5g23350	832399	GRAM domain-containing protein / ABA-responsive protein-related	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
66.6	99.8	302.3	At2g07698	815374	ATP synthase alpha chain, mitochondrial, putative	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF	O.I.	C.G.	H.G.
66.3	99.8	49.4	At5g04820	830361	OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
58.6	99.8	250.5	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
56.8	99.8	44.1	At4g30410	829164	transcription factor	F:transcription factor activity;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
55.3	99.8	189.7	At2g34070	817968	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
52.7	99.8	509.7	At4g27500	828859	PPI1 (PROTON PUMP INTERACTOR 1)	interacts with H+-ATPase, and regulates its activity	O.I.	C.G.	H.G.
52.7	99.8	41.8	At5g48175	834870	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
51.1	99.8	173.7	At5g26740	832714	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
51.1	99.8	10.3	At1g43040	840903	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
51.0	99.8	74.3	At5g24580	832529	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
49.4	99.8	969.2	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
48.6	99.8	40.8	At5g05570	830440	transducin family protein / WD-40 repeat family protein	F:methyltransferase activity, nucleotide binding, nucleic acid binding;P:vesicle-mediated transport, methylation;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
48.3	99.8	79.0	At2g47270	819340	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
48.2	99.8	88.0	At5g01320	830867	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV	O.I.	C.G.	H.G.
46.8	99.8	99.9	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.7	99.8	109.3	At1g72500	843582	inter-alpha-trypsin inhibitor heavy chain-related	F:unknown;P:unknown;C:plasma membrane;MBOPFA	O.I.	C.G.	H.G.
45.5	99.8	1077.4	At4g39200	830075	40S ribosomal protein S25 (RPS25E)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOA	O.I.	C.G.	H.G.
45.5	99.8	296.5	At3g62400	825413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.1	99.8	419.3	At1g04040	839325	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOM	O.I.	C.G.	H.G.
41.4	99.8	43.2	At1g23060	838914	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOBFV	O.I.	C.G.	H.G.
39.6	99.8	33.1	At4g27480	828857	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process, N-terminal protein myristoylation;C:endomembrane system, membrane;MPBVO	O.I.	C.G.	H.G.
39.3	99.8	152.5	At1g75780	843911	TUB1	beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses	O.I.	C.G.	H.G.
38.3	99.8	377.9	At5g64130	836534	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
38.2	99.8	143.7	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.6	99.7	46.0	At5g17910	831659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPVA	O.I.	C.G.	H.G.
36.7	99.7	81.0	At2g47540	819367	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
36.1	99.7	22.1	At2g34670	818032	proline-rich family protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOFVB	O.I.	C.G.	H.G.
35.1	99.7	121.8	At5g20660	832189	24 kDa vacuolar protein, putative	F:peptidase activity;P:proteolysis;C:unknown;MBFOPA	O.I.	C.G.	H.G.
35.1	99.7	70.3	At1g13590	837920	ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)	Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.	O.I.	C.G.	H.G.
33.8	99.7	581.0	At2g22170	816751	lipid-associated family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMO	O.I.	C.G.	H.G.
33.6	99.7	418.0	At5g56540	835755	AGP14 (ARABINOGALACTAN PROTEIN 14)	Encodes arabinogalactan protein (AGP14).	O.I.	C.G.	H.G.
33.4	99.7	22.9	At2g04500	814991	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM	O.I.	C.G.	H.G.
33.3	99.7	43.1	At1g74055	843745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
33.0	99.7	18.9	At1g66450	842963	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
32.7	99.7	621.7	At1g76200	843953	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;FPO	O.I.	C.G.	H.G.
32.0	99.7	23.1	At1g59940	842288	ARR3 (RESPONSE REGULATOR 3)	Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	O.I.	C.G.	H.G.
30.4	99.7	23.6	At5g35670	833540	iqd33 (IQ-domain 33)	F:calmodulin binding;P:biological_process unknown;C:unknown;PBMOF	O.I.	C.G.	H.G.
29.4	99.7	61.0	At5g03160	831917	ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK)	J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.	O.I.	C.G.	H.G.
28.6	99.7	18.5	At3g60930	825264	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
27.7	99.7	144.8	At1g67330	843054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
27.7	99.7	40.8	At4g30900	829214	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BOFPAM	O.I.	C.G.	H.G.
27.3	99.7	19.7	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
26.3	99.7	16.6	At3g20110	821554	CYP705A20	member of CYP705A	O.I.	C.G.	H.G.
25.7	99.7	20.7	At1g52250		-	-	O.I.	C.G.	H.G.
25.4	99.6	61.7	At2g48010	819413	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	receptor-like serine/threonine kinase (RKF3)	O.I.	C.G.	H.G.
25.3	99.6	215.6	At3g19390	821473	cysteine proteinase, putative / thiol protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
24.8	99.6	83.2	At3g26690	822281	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	O.I.	C.G.	H.G.
24.4	99.6	159.7	At1g12080	837760	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
24.4	99.6	9.3	At4g35200	829673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
24.4	99.6	9.0	At2g02620	814791	DC1 domain-containing protein / PHD finger protein-related	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;POM	O.I.	C.G.	H.G.
24.2	99.6	391.7	At4g26970	828805	aconitate hydratase/ copper ion binding	F:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAP	O.I.	C.G.	H.G.
24.2	99.6	385.7	At2g45820	819190	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:plasma membrane;OMPBFVA	O.I.	C.G.	H.G.
23.9	99.6	304.9	At4g30170	829140	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
23.9	99.6	44.5	At5g42860	834297	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMB	O.I.	C.G.	H.G.
23.9	99.6	9.1	At5g51420	835216	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	F:acyltransferase activity;P:unknown;C:unknown;PBO	O.I.	C.G.	H.G.
23.8	99.6	32.6	At5g27000	832758	ATK4 (ARABIDOPSIS THALIANA KINESIN 4)	Encodes a kinesin-like protein that binds microtubules in an ATP-dependent manner.	O.I.	C.G.	H.G.
23.4	99.6	13.1	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
23.3	99.6	109.4	At2g07751	815347	NADH-ubiquinone oxidoreductase chain 3, putative	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:endomembrane system;MOBPFA	O.I.	C.G.	H.G.
22.7	99.6	34.7	At5g14000	831248	anac084 (Arabidopsis NAC domain containing protein 84)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.3	99.6	53.2	At3g05920	819761	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA	O.I.	C.G.	H.G.
22.0	99.6	106.1	At5g04470	830326	SIM (SIAMESE)	Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.	O.I.	C.G.	H.G.
21.9	99.6	562.4	At2g23120	816844	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
21.9	99.6	11.8	At3g01900	821263	CYP94B2	member of CYP94B	O.I.	C.G.	H.G.
21.8	99.6	100.5	At5g16910	831554	CSLD2 (CELLULOSE-SYNTHASE LIKE D2)	encodes a gene similar to cellulose synthase. Located in golgi membranes.	O.I.	C.G.	H.G.
21.7	99.6	175.5	At1g14450	838007	unknown protein	F:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PF	O.I.	C.G.	H.G.
21.5	99.6	14.9	At2g04680	815011	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
21.4	99.6	104.0	At5g06700	830559	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
21.4	99.6	6.9	At3g50120	824174	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.3	99.6	34.4	At2g07695	815371	cytochrome c oxidase subunit II, putative	F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP	O.I.	C.G.	H.G.
20.8	99.6	6.9	At2g35870		-	-	O.I.	C.G.	H.G.
20.4	99.6	29.0	At4g36790	829832	transporter-related	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
20.3	99.6	31.0	At5g24500	832521	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPF	O.I.	C.G.	H.G.
20.3	99.6	16.7	At1g64700	842778	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.1	99.6	421.5	At5g02450	831907	60S ribosomal protein L36 (RPL36C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MOFP	O.I.	C.G.	H.G.
19.9	99.6	99.5	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
19.9	99.6	92.3	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
19.7	99.6	36.8	At5g52280	835304	protein transport protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
19.4	99.6	75.9	At5g41080	834110	glycerophosphoryl diester phosphodiesterase family protein	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
19.3	99.6	76.7	At4g16660	827367	heat shock protein 70, putative / HSP70, putative	F:ATP binding;P:unknown;C:plasma membrane, chloroplast;OBMFPAV	O.I.	C.G.	H.G.
19.1	99.6	27.1	At5g38700	833860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
18.9	99.5	383.3	At4g34710	829623	ADC2 (ARGININE DECARBOXYLASE 2)	encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.	O.I.	C.G.	H.G.
18.6	99.5	37.1	At2g39550	818540	PGGT-I	encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.	O.I.	C.G.	H.G.
18.6	99.5	24.7	At5g49680	835031	-	-	O.I.	C.G.	H.G.

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GSM ID	GSM226547
Assay name	Slice5JW
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226547 Assay name Slice5JW GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226547

Assay name Slice5JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function