Microarray experiments to specifically-expressed genes

GSM ID GSM226545
Assay name Slice3JW
GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
111.799.936.8At3g53650824533histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFBO.I.C.G.H.G.
104.899.933.2At3g20110821554CYP705A20member of CYP705AO.I.C.G.H.G.
86.499.942.5At3g09480820105histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFO.I.C.G.H.G.
85.199.9264.7At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
76.299.958.2At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
59.299.8179.0At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.399.877.5At1g54890841928late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.799.8122.4At1g16000838170unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.499.878.8At3g50900824254unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.099.858.4At1g17560838332HLL (HUELLENLOS)Mutant shows abnormal ovule developmentO.I.C.G.H.G.
37.799.7120.0At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
37.399.7215.8At3g54960824661ATPDIL1-3 (PDI-LIKE 1-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.O.I.C.G.H.G.
36.199.7103.3At5g66590836791allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
34.299.711.0At4g35200829673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
32.599.777.7At3g62810825456complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
32.299.726.5At3g62280825401carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
30.899.772.2At1g57540842129unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.199.748.6At1g74490843790protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
25.199.660.8At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
23.399.618.2At5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
22.599.6181.5At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
22.499.621.1At5g12970831137C2 domain-containing proteinF:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFO.I.C.G.H.G.
21.899.683.9At1g48160841235signal recognition particle 19 kDa protein, putative / SRP19, putativeF:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOPO.I.C.G.H.G.
21.199.695.7At1g7775084411130S ribosomal protein S13, chloroplast, putativeF:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAFO.I.C.G.H.G.
20.799.6179.2At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.H.G.
20.799.629.1At2g41780818777unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.199.655.5At3g13845820597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.199.634.6At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
19.499.683.8At2g18400816355ribosomal protein L6 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMAO.I.C.G.H.G.
19.199.6113.4At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
18.699.532.8At4g21610828248LOL2 (LSD ONE LIKE 2)Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.O.I.C.G.H.G.
18.599.520.3At2g30340817584LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBAO.I.C.G.H.G.
18.299.526.5At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
17.899.5113.3At1g476253767388-pseudogene of seven transmembrane domain proteinO.I.C.G.H.G.
17.599.529.0At4g37400829894CYP81F3member of CYP81FO.I.C.G.H.G.
17.199.543.9At1g23750838985DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PAOO.I.C.G.H.G.
17.199.523.1At5g25830832652zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
16.999.562.1At2g37470818324histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFO.I.C.G.H.G.
16.599.5227.2At1g09200837440histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
16.299.517.0At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.599.5219.3At4g29735829095unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
15.599.544.3At1g05210839261-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
15.499.519.6At3g57360824903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
14.699.4356.9At5g59870836109HTA6Encodes HTA6, a histone H2A protein.O.I.C.G.H.G.
14.699.497.2At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
14.599.4143.4At1g14450838007unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrial membrane, respiratory chain complex I;PFO.I.C.G.H.G.
14.599.4136.7At2g37120818288DNA-binding S1FA family proteinF:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;PO.I.C.G.H.G.
14.599.488.4At2g43640818966signal recognition particle 14 kDa family protein / SRP14 family proteinF:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPOO.I.C.G.H.G.
14.499.4136.0At2g03870814913small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOPO.I.C.G.H.G.
14.399.477.7At5g2066083218924 kDa vacuolar protein, putativeF:peptidase activity;P:proteolysis;C:unknown;MBFOPAO.I.C.G.H.G.
14.299.4305.4At2g2521081705960S ribosomal protein L39 (RPL39A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
14.199.475.3At4g00080828192UNE11 (unfertilized embryo sac 11)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;PO.I.C.G.H.G.
14.199.450.2At1g17510838325unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.099.411.8At4g01930828198DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
13.999.4291.8At2g45070819114SEC61 BETASec61 Beta SubunitO.I.C.G.H.G.
13.999.416.6At3g62920825467unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
13.899.4113.2At2g29530817502mitochondrial import inner membrane translocase (TIM10)Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus.O.I.C.G.H.G.
13.899.485.8At3g17780821046unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
13.499.452.6At1g33265840221unknown proteinF:unknown;P:biological_process unknown;C:chloroplast, membrane;PMBOFO.I.C.G.H.G.
13.299.446.1At3g17300820993-F:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
13.299.411.5At4g27590828869copper-binding protein-relatedF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
13.099.4132.6At4g2589082869560S acidic ribosomal protein P3 (RPP3A)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOBO.I.C.G.H.G.
13.099.480.4At1g15040838069glutamine amidotransferase-relatedF:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
12.899.319.1At2g46410819249CPC (CAPRICE)Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.O.I.C.G.H.G.
12.799.3356.4At2g22170816751lipid-associated family proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast, membrane;PMOO.I.C.G.H.G.
12.799.3147.8At2g22425816774peptidaseF:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPOO.I.C.G.H.G.
12.699.3171.8At5g0261083185360S ribosomal protein L35 (RPL35D)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFPO.I.C.G.H.G.
12.699.381.8At4g32870829423unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
12.599.346.2At5g51220835197ubiquinol-cytochrome C chaperone family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFPO.I.C.G.H.G.
12.599.310.5At2g20480816568unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.499.3508.7At4g2939082906040S ribosomal protein S30 (RPS30B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAVO.I.C.G.H.G.
12.499.3303.2At4g2941082906260S ribosomal protein L28 (RPL28C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFOO.I.C.G.H.G.
12.499.395.5At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
12.499.336.1At1g12400837795DNA bindingF:DNA binding;P:nucleotide-excision repair;C:endomembrane system;MPOO.I.C.G.H.G.
12.299.3315.9At3g0670081985560S ribosomal protein L29 (RPL29A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPFO.I.C.G.H.G.
12.299.361.3At1g73940843731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.199.383.4At3g46030823746HTB11F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFBO.I.C.G.H.G.
12.199.348.4At1g62810842580copper amine oxidase, putativeF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
12.199.341.3At1g13590837920ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.O.I.C.G.H.G.
12.099.3451.8At5g5667083576840S ribosomal protein S30 (RPS30C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MOFPAVO.I.C.G.H.G.
12.099.379.3At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
11.999.3301.9At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
11.999.366.4At4g39660830120AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,O.I.C.G.H.G.
11.799.3210.8At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
11.799.324.0At5g19340832054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBVO.I.C.G.H.G.
11.599.3155.4At5g03345831867-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
11.599.396.1At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
11.599.354.4At2g37975818375-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
11.499.339.4At1g13750837935calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFO.I.C.G.H.G.
11.399.3164.7At1g7427084376760S ribosomal protein L35a (RPL35aC)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
11.399.321.5At1g02430839242ATARFD1B (ADP-ribosylation factor D1B)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.O.I.C.G.H.G.
11.299.2131.8At5g20180832141ribosomal protein L36 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFMO.I.C.G.H.G.
11.099.2243.9At2g46540819266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;PO.I.C.G.H.G.
11.099.2127.5At3g47836823939unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.999.2245.9At3g5258082442440S ribosomal protein S14 (RPS14C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFO.I.C.G.H.G.
10.999.238.9At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
10.899.2272.5At3g4737082389140S ribosomal protein S20 (RPS20B)F:structural constituent of ribosome, RNA binding;P:translation;C:in 6 components;BOMAPFO.I.C.G.H.G.
10.899.220.4At1g69600843296ZFHD1 (ZINC FINGER HOMEODOMAIN 1)Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid.O.I.C.G.H.G.
10.799.262.8At3g02900821188unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO.I.C.G.H.G.
10.499.2489.3At5g59690836090histone H4F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFVO.I.C.G.H.G.



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