Microarray experiments to specifically-expressed genes

GSM ID GSM226544
Assay name Slice2JW
GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
105.899.955.5At5g57980835909RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)NRPB5-like protein of unknown function; homologous to budding yeast RPB5O.I.C.G.H.G.
65.499.856.1At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
61.199.818.7At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
60.399.838.8At3g57360824903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
58.999.836.1At2g37510818327RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAO.I.C.G.H.G.
49.199.8178.4At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
48.899.843.4At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
45.099.8112.4At5g63660836486PDF2.5Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
42.099.8141.4At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
39.699.840.9At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
39.299.876.0At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
38.199.8117.6At2g18400816355ribosomal protein L6 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMAO.I.C.G.H.G.
35.599.726.5At5g12970831137C2 domain-containing proteinF:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOFO.I.C.G.H.G.
34.399.779.9At3g62810825456complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
33.899.7113.7At4g17460827457HAT1Encodes homeobox protein HAT1.O.I.C.G.H.G.
32.299.723.0At3g62760825451ATGSTF13Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
31.899.730.0At3g15240820755--O.I.C.G.H.G.
31.399.758.5At5g13520831196peptidase M1 family proteinF:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAPO.I.C.G.H.G.
31.199.7147.5At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
30.999.7128.9At2g35605818127SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMVO.I.C.G.H.G.
30.799.7126.7At1g0707083721860S ribosomal protein L35a (RPL35aA)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOFPAO.I.C.G.H.G.
30.699.7123.0At5g1552083140540S ribosomal protein S19 (RPS19B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, membrane;MOAPFBO.I.C.G.H.G.
29.999.7156.8At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
29.299.718.8At3g53650824533histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFBO.I.C.G.H.G.
29.099.748.5At1g74490843790protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
28.299.735.5At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
27.599.749.7At1g17560838332HLL (HUELLENLOS)Mutant shows abnormal ovule developmentO.I.C.G.H.G.
26.799.7229.6At2g40360818629transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleus;BMOFPVAO.I.C.G.H.G.
26.399.7201.9At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.H.G.
25.899.7118.3At1g05205839266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.599.7130.1At1g26470839188-F:molecular_function unknown;P:regulation of transcription;C:nucleus, H4/H2A histone acetyltransferase complex;MPO.I.C.G.H.G.
25.299.614.4At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.O.I.C.G.H.G.
25.199.628.4At2g42110818811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
24.699.660.7At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
24.199.695.4At1g28395839737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
23.999.660.3At2g20585816581NFD6 (NUCLEAR FUSION DEFECTIVE 6)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
23.699.657.2At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
23.399.662.9At1g57540842129unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.299.6131.7At1g01210839481DNA-directed RNA polymerase III family proteinF:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAPO.I.C.G.H.G.
22.999.631.7At5g61880836309signaling molecule-relatedF:unknown;P:biological_process unknown;C:endomembrane system;MFPOO.I.C.G.H.G.
22.899.646.4At1g70350843371unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.499.683.1At1g73940843731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.6129.5At5g56940835796ribosomal protein S16 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMFO.I.C.G.H.G.
22.099.698.9At4g3080082920340S ribosomal protein S11 (RPS11B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFPO.I.C.G.H.G.
21.999.669.5At1g08780837400AIP3 (ABI3-INTERACTING PROTEIN 3)F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAO.I.C.G.H.G.
21.899.6166.2At1g16740838245ribosomal protein L20 family proteinF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMO.I.C.G.H.G.
21.499.6284.5At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
21.199.645.3At4g28470828964RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)encoding the RPN subunits of the 26S proteasomeO.I.C.G.H.G.
21.099.6168.9At4g2589082869560S acidic ribosomal protein P3 (RPP3A)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome, nucleus, plasma membrane;MPFOBO.I.C.G.H.G.
21.099.619.8At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
20.999.664.3At1g72090843540radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, membrane;OBAMPO.I.C.G.H.G.
20.699.657.5At3g17300820993-F:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
20.499.645.5At4g18400827570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBFO.I.C.G.H.G.
20.299.632.0At5g14690831321unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVMO.I.C.G.H.G.
19.899.6174.0At3g23830821966GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.O.I.C.G.H.G.
18.999.59.9At3g27473822369DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMOO.I.C.G.H.G.
18.899.5103.1At1g07830837298ribosomal protein L29 family proteinF:structural constituent of ribosome;P:translation;C:mitochondrion, ribosome, mitochondrial ribosome, intracellular;MFOPO.I.C.G.H.G.
18.899.578.4At4g25340828637immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-relatedF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVAO.I.C.G.H.G.
18.899.518.5At5g15510831404-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBVO.I.C.G.H.G.
18.899.510.3At5g63690836489-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOAO.I.C.G.H.G.
18.699.589.7At1g7775084411130S ribosomal protein S13, chloroplast, putativeF:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAFO.I.C.G.H.G.
18.699.542.2At3g22680821839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.699.520.6At3g51530824316F-box family proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
18.599.538.4At5g38720833863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
18.499.551.5At2g43780818981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
18.499.531.0At4g37090829863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
18.499.523.5At1g64490842757unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
18.299.5257.0At3g03920821062Gar1 RNA-binding region family proteinF:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVAO.I.C.G.H.G.
18.199.552.1At2g45430819151DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMFBOO.I.C.G.H.G.
18.099.583.2At1g14620838024DECOY (DECOY)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBO.I.C.G.H.G.
18.099.565.7At1g61580842454RPL3B (R-PROTEIN L3 B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFVO.I.C.G.H.G.
18.099.536.1At3g60360825207EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)F:molecular_function unknown;P:megagametogenesis;C:small-subunit processome;MFOPABO.I.C.G.H.G.
17.899.552.1At3g13845820597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.799.536.2At4g16265827321NRPB9BOne of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980O.I.C.G.H.G.
17.499.592.0At5g54970835588unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.499.572.4At3g18760821407ribosomal protein S6 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;PMO.I.C.G.H.G.
17.499.510.0At5g15725831428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.399.525.8At3g15357820774unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;OMBFPVAO.I.C.G.H.G.
17.299.565.9At5g09770830837ribosomal protein L17 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMPO.I.C.G.H.G.
17.299.541.5At5g48240834877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPBO.I.C.G.H.G.
17.199.5161.1At4g31840829313plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;PO.I.C.G.H.G.
17.199.558.7At2g45860819194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.099.580.6At3g01740821088-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
17.099.579.5At2g25670817108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
16.999.5209.2At4g29840829106MTO2 (METHIONINE OVER-ACCUMULATOR 2)threonine synthaseO.I.C.G.H.G.
16.999.526.7At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
16.899.5116.1At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
16.899.599.2At3g55200824686splicing factor, putativeF:nucleic acid binding;P:biological_process unknown;C:nucleus, chloroplast;MFOPBO.I.C.G.H.G.
16.799.5225.1At3g1009082017040S ribosomal protein S28 (RPS28A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall;MOAPFO.I.C.G.H.G.
16.799.549.6At1g74500843791bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
16.699.5184.2At1g61570842453TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.O.I.C.G.H.G.
16.699.581.6At3g27280822347ATPHB4 (PROHIBITIN 4)Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissuesO.I.C.G.H.G.
16.699.559.3At2g45730819181eukaryotic initiation factor 3 gamma subunit family proteinF:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
16.699.512.1At2g20480816568unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.699.510.6At5g57080835812unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.599.5349.8At4g2941082906260S ribosomal protein L28 (RPL28C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFOO.I.C.G.H.G.
16.599.5129.2At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
16.599.554.3At1g17510838325unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.499.518.5At3g09480820105histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFO.I.C.G.H.G.
16.399.5327.3At2g2521081705960S ribosomal protein L39 (RPL39A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.



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