CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226543

Assay name Slice1JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
387.9 100.0 79.7 At3g62760 825451 ATGSTF13 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
96.2 99.9 23.5 At5g15725 831428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
83.7 99.9 262.7 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
71.0 99.9 117.4 At4g38410 829998 dehydrin, putative F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
64.5 99.8 43.6 At1g56680 842124 glycoside hydrolase family 19 protein F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
63.8 99.8 310.4 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
60.8 99.8 152.5 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. O.I. C.G. H.G.
50.4 99.8 21.6 At5g47440 834792 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF O.I. C.G. H.G.
50.0 99.8 63.7 At1g74490 843790 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
49.4 99.8 196.2 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA O.I. C.G. H.G.
47.0 99.8 115.0 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
46.4 99.8 70.9 At5g24580 832529 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
42.0 99.8 84.4 At1g57540 842129 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.9 99.8 148.9 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P O.I. C.G. H.G.
41.1 99.8 30.2 At2g37510 818327 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA O.I. C.G. H.G.
40.7 99.8 88.4 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
40.1 99.8 86.9 At1g65570 842868 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
38.0 99.8 167.0 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
37.6 99.7 43.6 At5g14690 831321 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVM O.I. C.G. H.G.
36.3 99.7 14.1 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM O.I. C.G. H.G.
34.9 99.7 19.3 At3g30350 822736 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
32.8 99.7 65.3 At2g43600 818962 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
32.4 99.7 132.4 At1g05205 839266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.0 99.7 28.3 At3g57360 824903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
30.8 99.7 67.3 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
30.5 99.7 23.9 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
30.0 99.7 25.5 At1g73340 843669 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
29.9 99.7 20.1 At4g10640 826656 IQD16 (IQ-domain 16) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
29.8 99.7 18.5 At1g65620 842873 AS2 (ASYMMETRIC LEAVES 2) required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP. O.I. C.G. H.G.
29.2 99.7 117.8 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
28.8 99.7 29.2 At1g07290 837240 nucleotide-sugar transmembrane transporter F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
28.6 99.7 50.7 At1g17560 838332 HLL (HUELLENLOS) Mutant shows abnormal ovule development O.I. C.G. H.G.
28.3 99.7 327.3 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
28.2 99.7 222.2 At1g52070 841636 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
27.5 99.7 123.8 At5g18670 831985 BMY3 putative beta-amylase BMY3 (BMY3) O.I. C.G. H.G.
27.4 99.7 29.1 At1g80370 844377 CYCA2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB O.I. C.G. H.G.
26.9 99.7 82.4 At5g09770 830837 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMP O.I. C.G. H.G.
26.3 99.7 13.9 At3g49630 824125 2-oxoacid-dependent oxidase, putative F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM O.I. C.G. H.G.
26.0 99.7 78.1 At3g07410 819929 AtRABA5b (Arabidopsis Rab GTPase homolog A5b) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. C.G. H.G.
26.0 99.7 32.8 At1g02430 839242 ATARFD1B (ADP-ribosylation factor D1B) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. O.I. C.G. H.G.
25.6 99.7 20.3 At2g43480 818949 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
25.3 99.6 136.9 At3g12920 820477 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:nucleus;MPOV O.I. C.G. H.G.
25.1 99.6 127.4 At2g30000 817551 - F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
24.7 99.6 37.5 At5g04970 830379 pectinesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA O.I. C.G. H.G.
23.5 99.6 21.6 At5g12970 831137 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF O.I. C.G. H.G.
23.2 99.6 25.6 At3g15240 820755 - - O.I. C.G. H.G.
23.1 99.6 21.2 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
23.0 99.6 25.9 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
22.9 99.6 57.9 At1g74500 843791 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
22.6 99.6 56.6 At2g23630 816895 sks16 (SKU5 Similar 16) F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA O.I. C.G. H.G.
22.6 99.6 19.9 At5g07040 830595 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV O.I. C.G. H.G.
22.3 99.6 44.5 At5g60300 836152 lectin protein kinase family protein Lectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion. O.I. C.G. H.G.
22.2 99.6 185.6 At1g54690 841910 GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX) Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. O.I. C.G. H.G.
22.1 99.6 13.5 At2g24400 816976 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
21.7 99.6 280.5 At3g03920 821062 Gar1 RNA-binding region family protein F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA O.I. C.G. H.G.
21.0 99.6 40.7 At1g32190 840111 - F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;MOBPFV O.I. C.G. H.G.
20.8 99.6 61.0 At1g17510 838325 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
20.6 99.6 45.8 At1g53180 841752 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
20.4 99.6 60.1 At1g75710 843905 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;OPMF O.I. C.G. H.G.
20.2 99.6 32.4 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family O.I. C.G. H.G.
20.1 99.6 116.3 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
19.9 99.6 245.7 At5g54370 835525 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.6 99.6 30.1 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.5 99.6 86.3 At3g01740 821088 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
19.2 99.6 63.7 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
19.0 99.5 85.1 At5g60950 836216 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
18.9 99.5 13.2 At4g19980 827742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
18.4 99.5 60.4 At1g72090 843540 radical SAM domain-containing protein / TRAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, membrane;OBAMP O.I. C.G. H.G.
18.4 99.5 17.9 At1g15480 838118 DNA binding F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB O.I. C.G. H.G.
18.1 99.5 366.5 At4g29410 829062 60S ribosomal protein L28 (RPL28C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFO O.I. C.G. H.G.
18.1 99.5 27.6 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
18.0 99.5 84.2 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF O.I. C.G. H.G.
18.0 99.5 70.1 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
17.8 99.5 115.9 At5g56940 835796 ribosomal protein S16 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMF O.I. C.G. H.G.
17.8 99.5 29.8 At5g15160 831368 bHLH family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;P O.I. C.G. H.G.
17.0 99.5 27.6 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
16.9 99.5 29.6 At4g37090 829863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
16.8 99.5 63.0 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
16.8 99.5 38.3 At3g55760 824742 unknown protein F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB O.I. C.G. H.G.
16.4 99.5 46.6 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
16.2 99.5 76.6 At2g18400 816355 ribosomal protein L6 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA O.I. C.G. H.G.
16.1 99.5 83.5 At1g77750 844111 30S ribosomal protein S13, chloroplast, putative F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAF O.I. C.G. H.G.
16.1 99.5 60.7 At1g15250 838092 60S ribosomal protein L37 (RPL37A) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
16.1 99.5 49.6 At3g13845 820597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.0 99.5 9.6 At5g52170 835293 HDG7 (HOMEODOMAIN GLABROUS 7) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
15.9 99.5 162.2 At1g77330 844069 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor) O.I. C.G. H.G.
15.9 99.5 30.6 At1g53140 841748 dynamin family protein Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis. O.I. C.G. H.G.
15.7 99.5 30.6 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO O.I. C.G. H.G.
15.7 99.5 13.3 At5g57420 835848 IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33) Belongs to auxin inducible gene family. O.I. C.G. H.G.
15.6 99.5 36.0 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
15.3 99.4 90.5 At2g35605 818127 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV O.I. C.G. H.G.
15.3 99.4 57.0 At5g54440 835532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
15.2 99.4 23.5 At1g76500 843983 SOB3 (SUPPRESSOR OF PHYB-4#3) Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light O.I. C.G. H.G.
15.1 99.4 15.9 At3g12955 820481 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
14.9 99.4 174.5 At1g61570 842453 TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13) Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space. O.I. C.G. H.G.
14.9 99.4 21.9 At2g42110 818811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
14.8 99.4 286.6 At3g52580 824424 40S ribosomal protein S14 (RPS14C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF O.I. C.G. H.G.
14.7 99.4 20.1 At3g44610 823587 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA O.I. C.G. H.G.
14.6 99.4 18.3 At1g26660 839206 c-myc binding protein, putative / prefoldin, putative F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAB O.I. C.G. H.G.
14.5 99.4 53.4 At4g27400 828848 late embryogenesis abundant protein-related / LEA protein-related F:unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
387.9	100.0	79.7	At3g62760	825451	ATGSTF13	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
96.2	99.9	23.5	At5g15725	831428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
83.7	99.9	262.7	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
71.0	99.9	117.4	At4g38410	829998	dehydrin, putative	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
64.5	99.8	43.6	At1g56680	842124	glycoside hydrolase family 19 protein	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
63.8	99.8	310.4	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
60.8	99.8	152.5	At4g17460	827457	HAT1	Encodes homeobox protein HAT1.	O.I.	C.G.	H.G.
50.4	99.8	21.6	At5g47440	834792	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
50.0	99.8	63.7	At1g74490	843790	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
49.4	99.8	196.2	At3g19430	821477	late embryogenesis abundant protein-related / LEA protein-related	F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA	O.I.	C.G.	H.G.
47.0	99.8	115.0	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
46.4	99.8	70.9	At5g24580	832529	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
42.0	99.8	84.4	At1g57540	842129	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.9	99.8	148.9	At5g10130	830877	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P	O.I.	C.G.	H.G.
41.1	99.8	30.2	At2g37510	818327	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA	O.I.	C.G.	H.G.
40.7	99.8	88.4	At3g04320	819587	endopeptidase inhibitor	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
40.1	99.8	86.9	At1g65570	842868	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
38.0	99.8	167.0	At1g50060	841430	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
37.6	99.7	43.6	At5g14690	831321	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVM	O.I.	C.G.	H.G.
36.3	99.7	14.1	At1g50720	841494	stigma-specific Stig1 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM	O.I.	C.G.	H.G.
34.9	99.7	19.3	At3g30350	822736	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
32.8	99.7	65.3	At2g43600	818962	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
32.4	99.7	132.4	At1g05205	839266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.0	99.7	28.3	At3g57360	824903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
30.8	99.7	67.3	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
30.5	99.7	23.9	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
30.0	99.7	25.5	At1g73340	843669	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
29.9	99.7	20.1	At4g10640	826656	IQD16 (IQ-domain 16)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
29.8	99.7	18.5	At1g65620	842873	AS2 (ASYMMETRIC LEAVES 2)	required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Forms a complex with AS1 that binds to the BP promoter and leads to silencing of BP.	O.I.	C.G.	H.G.
29.2	99.7	117.8	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
28.8	99.7	29.2	At1g07290	837240	nucleotide-sugar transmembrane transporter	F:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
28.6	99.7	50.7	At1g17560	838332	HLL (HUELLENLOS)	Mutant shows abnormal ovule development	O.I.	C.G.	H.G.
28.3	99.7	327.3	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
28.2	99.7	222.2	At1g52070	841636	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
27.5	99.7	123.8	At5g18670	831985	BMY3	putative beta-amylase BMY3 (BMY3)	O.I.	C.G.	H.G.
27.4	99.7	29.1	At1g80370	844377	CYCA2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus, chloroplast;MPOFVB	O.I.	C.G.	H.G.
26.9	99.7	82.4	At5g09770	830837	ribosomal protein L17 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMP	O.I.	C.G.	H.G.
26.3	99.7	13.9	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
26.0	99.7	78.1	At3g07410	819929	AtRABA5b (Arabidopsis Rab GTPase homolog A5b)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
26.0	99.7	32.8	At1g02430	839242	ATARFD1B (ADP-ribosylation factor D1B)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	O.I.	C.G.	H.G.
25.6	99.7	20.3	At2g43480	818949	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
25.3	99.6	136.9	At3g12920	820477	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:nucleus;MPOV	O.I.	C.G.	H.G.
25.1	99.6	127.4	At2g30000	817551	-	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
24.7	99.6	37.5	At5g04970	830379	pectinesterase, putative	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA	O.I.	C.G.	H.G.
23.5	99.6	21.6	At5g12970	831137	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
23.2	99.6	25.6	At3g15240	820755	-	-	O.I.	C.G.	H.G.
23.1	99.6	21.2	At2g40470	818641	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
23.0	99.6	25.9	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
22.9	99.6	57.9	At1g74500	843791	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
22.6	99.6	56.6	At2g23630	816895	sks16 (SKU5 Similar 16)	F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA	O.I.	C.G.	H.G.
22.6	99.6	19.9	At5g07040	830595	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV	O.I.	C.G.	H.G.
22.3	99.6	44.5	At5g60300	836152	lectin protein kinase family protein	Lectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion.	O.I.	C.G.	H.G.
22.2	99.6	185.6	At1g54690	841910	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.	O.I.	C.G.	H.G.
22.1	99.6	13.5	At2g24400	816976	auxin-responsive protein, putative / small auxin up RNA (SAUR_D)	F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
21.7	99.6	280.5	At3g03920	821062	Gar1 RNA-binding region family protein	F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA	O.I.	C.G.	H.G.
21.0	99.6	40.7	At1g32190	840111	-	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;MOBPFV	O.I.	C.G.	H.G.
20.8	99.6	61.0	At1g17510	838325	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
20.6	99.6	45.8	At1g53180	841752	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
20.4	99.6	60.1	At1g75710	843905	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;OPMF	O.I.	C.G.	H.G.
20.2	99.6	32.4	At1g14080	837968	FUT6 (FUCOSYLTRANSFERASE 6)	member of Xyloglucan fucosyltransferase family	O.I.	C.G.	H.G.
20.1	99.6	116.3	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
19.9	99.6	245.7	At5g54370	835525	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.6	99.6	30.1	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.5	99.6	86.3	At3g01740	821088	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
19.2	99.6	63.7	At2g45730	819181	eukaryotic initiation factor 3 gamma subunit family protein	F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
19.0	99.5	85.1	At5g60950	836216	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
18.9	99.5	13.2	At4g19980	827742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
18.4	99.5	60.4	At1g72090	843540	radical SAM domain-containing protein / TRAM domain-containing protein	F:iron-sulfur cluster binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, membrane;OBAMP	O.I.	C.G.	H.G.
18.4	99.5	17.9	At1g15480	838118	DNA binding	F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB	O.I.	C.G.	H.G.
18.1	99.5	366.5	At4g29410	829062	60S ribosomal protein L28 (RPL28C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MPFO	O.I.	C.G.	H.G.
18.1	99.5	27.6	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
18.0	99.5	84.2	At1g80270	844367	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF	O.I.	C.G.	H.G.
18.0	99.5	70.1	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
17.8	99.5	115.9	At5g56940	835796	ribosomal protein S16 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPMF	O.I.	C.G.	H.G.
17.8	99.5	29.8	At5g15160	831368	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:vacuole;P	O.I.	C.G.	H.G.
17.0	99.5	27.6	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
16.9	99.5	29.6	At4g37090	829863	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
16.8	99.5	63.0	At5g60520	836173	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.8	99.5	38.3	At3g55760	824742	unknown protein	F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB	O.I.	C.G.	H.G.
16.4	99.5	46.6	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
16.2	99.5	76.6	At2g18400	816355	ribosomal protein L6 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOFPMA	O.I.	C.G.	H.G.
16.1	99.5	83.5	At1g77750	844111	30S ribosomal protein S13, chloroplast, putative	F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
16.1	99.5	60.7	At1g15250	838092	60S ribosomal protein L37 (RPL37A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
16.1	99.5	49.6	At3g13845	820597	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.0	99.5	9.6	At5g52170	835293	HDG7 (HOMEODOMAIN GLABROUS 7)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
15.9	99.5	162.2	At1g77330	844069	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	similar to 1-aminocyclopropane-1-carboxylate oxidase GI:3386565 from (Sorghum bicolor)	O.I.	C.G.	H.G.
15.9	99.5	30.6	At1g53140	841748	dynamin family protein	Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.	O.I.	C.G.	H.G.
15.7	99.5	30.6	At1g31950	840085	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO	O.I.	C.G.	H.G.
15.7	99.5	13.3	At5g57420	835848	IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33)	Belongs to auxin inducible gene family.	O.I.	C.G.	H.G.
15.6	99.5	36.0	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
15.3	99.4	90.5	At2g35605	818127	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV	O.I.	C.G.	H.G.
15.3	99.4	57.0	At5g54440	835532	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
15.2	99.4	23.5	At1g76500	843983	SOB3 (SUPPRESSOR OF PHYB-4#3)	Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light	O.I.	C.G.	H.G.
15.1	99.4	15.9	At3g12955	820481	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
14.9	99.4	174.5	At1g61570	842453	TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)	Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.	O.I.	C.G.	H.G.
14.9	99.4	21.9	At2g42110	818811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
14.8	99.4	286.6	At3g52580	824424	40S ribosomal protein S14 (RPS14C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
14.7	99.4	20.1	At3g44610	823587	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA	O.I.	C.G.	H.G.
14.6	99.4	18.3	At1g26660	839206	c-myc binding protein, putative / prefoldin, putative	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAB	O.I.	C.G.	H.G.
14.5	99.4	53.4	At4g27400	828848	late embryogenesis abundant protein-related / LEA protein-related	F:unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.

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GSM ID	GSM226543
Assay name	Slice1JW
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226543 Assay name Slice1JW GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226543

Assay name Slice1JW

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function