CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM226541

Assay name L11SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
571.1 100.0 86.1 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
539.7 100.0 357.3 At2g21100 816645 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
512.5 100.0 166.6 At3g50400 824204 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
450.0 100.0 236.6 At5g13900 831237 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
382.6 100.0 123.6 At1g54540 841896 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
277.6 100.0 239.7 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
226.1 100.0 371.7 At4g36430 829795 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM O.I. C.G. H.G.
213.1 100.0 126.8 At1g64160 842720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
211.7 100.0 288.2 At1g56320 842085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
199.5 100.0 51.7 At5g08250 830721 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:cellular_component unknown;MPFBOAV O.I. C.G. H.G.
169.1 100.0 156.5 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
132.8 99.9 235.2 At3g27200 822339 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF O.I. C.G. H.G.
124.2 99.9 166.3 At2g27550 817302 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. O.I. C.G. H.G.
120.0 99.9 125.8 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
118.1 99.9 141.5 At2g01880 814719 PAP7 (PURPLE ACID PHOSPHATASE 7) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF O.I. C.G. H.G.
108.8 99.9 311.4 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
101.7 99.9 320.5 At4g01700 828131 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF O.I. C.G. H.G.
96.5 99.9 68.1 At1g05450 837046 protease inhibitor/seed storage/lipid transfer protein (LTP)-related Encodes a Protease inhibitor/seed storage/LTP family protein O.I. C.G. H.G.
91.5 99.9 48.4 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV O.I. C.G. H.G.
87.8 99.9 322.0 At1g02900 839389 RALF1 (RAPID ALKALINIZATION FACTOR 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
81.9 99.9 152.3 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM O.I. C.G. H.G.
78.3 99.9 66.5 At5g05390 830421 LAC12 (laccase 12) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
75.8 99.9 94.5 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
74.5 99.9 48.2 At3g27270 822346 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO O.I. C.G. H.G.
74.4 99.9 80.2 At4g13235 826940 EDA21 (embryo sac development arrest 21) Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
73.9 99.9 175.1 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
72.1 99.9 54.3 At5g23190 832383 CYP86B1 cytochrome P450 CYP86B1, nuclear gene for chloroplast product O.I. C.G. H.G.
70.0 99.9 249.0 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
69.3 99.9 696.0 At3g22600 821832 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;POM O.I. C.G. H.G.
68.6 99.9 622.9 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
67.1 99.8 12.4 At1g67670 843092 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
66.4 99.8 53.0 At2g16760 816177 - F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
63.3 99.8 28.8 At1g59730 842266 ATH7 (thioredoxin H-type 7) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
61.8 99.8 435.8 At3g18280 821356 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
61.4 99.8 290.9 At4g02270 828083 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
61.2 99.8 43.3 At1g18140 838393 LAC1 (Laccase 1) putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). O.I. C.G. H.G.
60.2 99.8 41.9 At2g35770 818149 scpl28 (serine carboxypeptidase-like 28) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
58.0 99.8 42.4 At2g40160 818607 - F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.8 99.8 19.5 At1g53270 841761 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
55.4 99.8 302.6 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
54.2 99.8 646.4 At2g38870 818471 protease inhibitor, putative Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
52.7 99.8 73.4 At1g31470 840037 NFD4 (NUCLEAR FUSION DEFECTIVE 4) F:unknown;P:response to salt stress;C:mitochondrion;PBFOAM O.I. C.G. H.G.
52.2 99.8 57.4 At5g14130 831263 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
51.3 99.8 49.3 At1g51920 841620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
50.5 99.8 236.7 At1g17180 838289 ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
49.8 99.8 98.2 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P O.I. C.G. H.G.
49.2 99.8 614.9 At4g37410 829895 CYP81F4 member of CYP81F O.I. C.G. H.G.
47.2 99.8 124.8 At1g72230 843555 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POB O.I. C.G. H.G.
47.1 99.8 42.9 At3g31415 822906 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
46.8 99.8 368.3 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
43.5 99.8 467.9 At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
43.0 99.8 45.8 At2g40370 818630 LAC5 (laccase 5) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
42.8 99.8 197.9 At4g35060 829658 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
42.6 99.8 191.0 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
42.2 99.8 137.5 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
41.7 99.8 269.8 At2g31090 817665 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.6 99.8 107.6 At4g24130 828513 unknown protein F:unknown;P:biological_process unknown;C:nucleus;P O.I. C.G. H.G.
40.5 99.8 65.8 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
39.4 99.8 20.4 At4g28110 828927 AtMYB41 (myb domain protein 41) Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion. O.I. C.G. H.G.
39.3 99.8 50.9 At3g50300 824192 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
39.0 99.8 629.2 At1g22410 838847 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF O.I. C.G. H.G.
39.0 99.8 39.1 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. C.G. H.G.
38.6 99.8 41.1 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
37.5 99.7 24.9 At2g19060 816423 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
37.1 99.7 210.3 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA O.I. C.G. H.G.
36.4 99.7 23.7 At4g29800 829102 PLP8 (PATATIN-LIKE PROTEIN 8) F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM O.I. C.G. H.G.
36.3 99.7 321.7 At5g55180 835611 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
35.3 99.7 108.5 At3g44320 823557 NIT3 (NITRILASE 3) This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways. O.I. C.G. H.G.
35.0 99.7 133.8 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.9 99.7 45.5 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.8 99.7 147.3 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
33.3 99.7 571.2 At2g44790 819088 UCC2 (UCLACYANIN 2) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. O.I. C.G. H.G.
31.8 99.7 409.2 At5g67600 836896 unknown protein F:unknown;P:unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
31.4 99.7 68.9 At2g25160 817054 CYP82F1 member of CYP82F O.I. C.G. H.G.
31.2 99.7 387.2 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity O.I. C.G. H.G.
30.9 99.7 625.8 At2g31570 817715 ATGPX2 (GLUTATHIONE PEROXIDASE 2) glutathione peroxidase GPx O.I. C.G. H.G.
30.8 99.7 765.0 At5g40730 834073 AGP24 Encodes an arabinogalactan-protein (AGP24). O.I. C.G. H.G.
30.7 99.7 94.6 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
30.7 99.7 48.3 At5g64900 836613 PROPEP1 Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response. O.I. C.G. H.G.
30.3 99.7 226.2 At4g23690 828469 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
29.9 99.7 51.6 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.8 99.7 110.9 At3g06420 819816 ATG8H (autophagy 8h) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. C.G. H.G.
29.6 99.7 61.8 At4g21600 828246 ENDO5 (endonuclease 5) Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops). O.I. C.G. H.G.
29.3 99.7 49.7 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
28.9 99.7 152.5 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV O.I. C.G. H.G.
28.0 99.7 8.0 At5g58910 836008 LAC16 (laccase 16) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
27.0 99.7 260.2 At1g28400 839738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVA O.I. C.G. H.G.
26.7 99.7 112.7 At2g40080 818596 ELF4 (EARLY FLOWERING 4) Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes. O.I. C.G. H.G.
26.6 99.7 234.1 At1g74020 843740 SS2 (STRICTOSIDINE SYNTHASE 2) Encodes AtSS-2 strictosidine synthase. O.I. C.G. H.G.
26.2 99.7 15.8 At2g35730 818143 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:endomembrane system;P O.I. C.G. H.G.
25.8 99.7 5.5 At1g04330 839548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
25.4 99.6 91.6 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
24.6 99.6 28.2 At3g07600 819951 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV O.I. C.G. H.G.
23.8 99.6 39.3 At1g69920 843328 ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
23.5 99.6 148.9 At5g24570 832528 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.3 99.6 68.2 At5g05340 830416 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM O.I. C.G. H.G.
22.9 99.6 18.5 At3g20860 821634 ATNEK5 (NIMA-RELATED KINASE5) Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. O.I. C.G. H.G.
22.8 99.6 357.9 At5g65020 836626 ANNAT2 (Annexin Arabidopsis 2) Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides. O.I. C.G. H.G.
22.7 99.6 94.6 At3g10930 820264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
22.7 99.6 19.1 At4g21230 827872 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
571.1	100.0	86.1	At1g03700	839428	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
539.7	100.0	357.3	At2g21100	816645	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
512.5	100.0	166.6	At3g50400	824204	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
450.0	100.0	236.6	At5g13900	831237	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
382.6	100.0	123.6	At1g54540	841896	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
277.6	100.0	239.7	At5g09520	830811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
226.1	100.0	371.7	At4g36430	829795	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM	O.I.	C.G.	H.G.
213.1	100.0	126.8	At1g64160	842720	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
211.7	100.0	288.2	At1g56320	842085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
199.5	100.0	51.7	At5g08250	830721	cytochrome P450 family protein	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:cellular_component unknown;MPFBOAV	O.I.	C.G.	H.G.
169.1	100.0	156.5	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
132.8	99.9	235.2	At3g27200	822339	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF	O.I.	C.G.	H.G.
124.2	99.9	166.3	At2g27550	817302	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.	O.I.	C.G.	H.G.
120.0	99.9	125.8	At4g36610	829813	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
118.1	99.9	141.5	At2g01880	814719	PAP7 (PURPLE ACID PHOSPHATASE 7)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF	O.I.	C.G.	H.G.
108.8	99.9	311.4	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
101.7	99.9	320.5	At4g01700	828131	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVF	O.I.	C.G.	H.G.
96.5	99.9	68.1	At1g05450	837046	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	Encodes a Protease inhibitor/seed storage/LTP family protein	O.I.	C.G.	H.G.
91.5	99.9	48.4	At5g19410	832061	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV	O.I.	C.G.	H.G.
87.8	99.9	322.0	At1g02900	839389	RALF1 (RAPID ALKALINIZATION FACTOR 1)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
81.9	99.9	152.3	At2g48130	819425	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM	O.I.	C.G.	H.G.
78.3	99.9	66.5	At5g05390	830421	LAC12 (laccase 12)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
75.8	99.9	94.5	At1g68850	843218	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
74.5	99.9	48.2	At3g27270	822346	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO	O.I.	C.G.	H.G.
74.4	99.9	80.2	At4g13235	826940	EDA21 (embryo sac development arrest 21)	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
73.9	99.9	175.1	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
72.1	99.9	54.3	At5g23190	832383	CYP86B1	cytochrome P450 CYP86B1, nuclear gene for chloroplast product	O.I.	C.G.	H.G.
70.0	99.9	249.0	At5g66390	836771	peroxidase 72 (PER72) (P72) (PRXR8)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
69.3	99.9	696.0	At3g22600	821832	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;POM	O.I.	C.G.	H.G.
68.6	99.9	622.9	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
67.1	99.8	12.4	At1g67670	843092	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
66.4	99.8	53.0	At2g16760	816177	-	F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
63.3	99.8	28.8	At1g59730	842266	ATH7 (thioredoxin H-type 7)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
61.8	99.8	435.8	At3g18280	821356	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
61.4	99.8	290.9	At4g02270	828083	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
61.2	99.8	43.3	At1g18140	838393	LAC1 (Laccase 1)	putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).	O.I.	C.G.	H.G.
60.2	99.8	41.9	At2g35770	818149	scpl28 (serine carboxypeptidase-like 28)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
58.0	99.8	42.4	At2g40160	818607	-	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.8	99.8	19.5	At1g53270	841761	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
55.4	99.8	302.6	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
54.2	99.8	646.4	At2g38870	818471	protease inhibitor, putative	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
52.7	99.8	73.4	At1g31470	840037	NFD4 (NUCLEAR FUSION DEFECTIVE 4)	F:unknown;P:response to salt stress;C:mitochondrion;PBFOAM	O.I.	C.G.	H.G.
52.2	99.8	57.4	At5g14130	831263	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
51.3	99.8	49.3	At1g51920	841620	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
50.5	99.8	236.7	At1g17180	838289	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
49.8	99.8	98.2	At4g17280	827442	-	F:unknown;P:multicellular organismal development;C:membrane;P	O.I.	C.G.	H.G.
49.2	99.8	614.9	At4g37410	829895	CYP81F4	member of CYP81F	O.I.	C.G.	H.G.
47.2	99.8	124.8	At1g72230	843555	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POB	O.I.	C.G.	H.G.
47.1	99.8	42.9	At3g31415	822906	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
46.8	99.8	368.3	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
43.5	99.8	467.9	At5g09530	830812	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
43.0	99.8	45.8	At2g40370	818630	LAC5 (laccase 5)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
42.8	99.8	197.9	At4g35060	829658	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.6	99.8	191.0	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
42.2	99.8	137.5	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
41.7	99.8	269.8	At2g31090	817665	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.6	99.8	107.6	At4g24130	828513	unknown protein	F:unknown;P:biological_process unknown;C:nucleus;P	O.I.	C.G.	H.G.
40.5	99.8	65.8	At5g47980	834849	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
39.4	99.8	20.4	At4g28110	828927	AtMYB41 (myb domain protein 41)	Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.	O.I.	C.G.	H.G.
39.3	99.8	50.9	At3g50300	824192	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
39.0	99.8	629.2	At1g22410	838847	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	F:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPF	O.I.	C.G.	H.G.
39.0	99.8	39.1	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	C.G.	H.G.
38.6	99.8	41.1	At5g58010	835913	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
37.5	99.7	24.9	At2g19060	816423	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
37.1	99.7	210.3	At4g30450	829168	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
36.4	99.7	23.7	At4g29800	829102	PLP8 (PATATIN-LIKE PROTEIN 8)	F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM	O.I.	C.G.	H.G.
36.3	99.7	321.7	At5g55180	835611	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
35.3	99.7	108.5	At3g44320	823557	NIT3 (NITRILASE 3)	This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.	O.I.	C.G.	H.G.
35.0	99.7	133.8	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.9	99.7	45.5	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.8	99.7	147.3	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
33.3	99.7	571.2	At2g44790	819088	UCC2 (UCLACYANIN 2)	Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods.	O.I.	C.G.	H.G.
31.8	99.7	409.2	At5g67600	836896	unknown protein	F:unknown;P:unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
31.4	99.7	68.9	At2g25160	817054	CYP82F1	member of CYP82F	O.I.	C.G.	H.G.
31.2	99.7	387.2	At5g64120	836533	peroxidase, putative	encodes a cell wall bound peroxidase that is induced by hypo-osmolarity	O.I.	C.G.	H.G.
30.9	99.7	625.8	At2g31570	817715	ATGPX2 (GLUTATHIONE PEROXIDASE 2)	glutathione peroxidase GPx	O.I.	C.G.	H.G.
30.8	99.7	765.0	At5g40730	834073	AGP24	Encodes an arabinogalactan-protein (AGP24).	O.I.	C.G.	H.G.
30.7	99.7	94.6	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
30.7	99.7	48.3	At5g64900	836613	PROPEP1	Encodes a putative 92-aa protein that is the precursor of AtPep1, a 23-aa peptide which activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H2O2, both being components of the innate immune response.	O.I.	C.G.	H.G.
30.3	99.7	226.2	At4g23690	828469	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
29.9	99.7	51.6	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.8	99.7	110.9	At3g06420	819816	ATG8H (autophagy 8h)	F:microtubule binding;P:autophagy;C:unknown;MOPFV	O.I.	C.G.	H.G.
29.6	99.7	61.8	At4g21600	828246	ENDO5 (endonuclease 5)	Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).	O.I.	C.G.	H.G.
29.3	99.7	49.7	At4g05200	825868	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
28.9	99.7	152.5	At1g30750	839955	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV	O.I.	C.G.	H.G.
28.0	99.7	8.0	At5g58910	836008	LAC16 (laccase 16)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
27.0	99.7	260.2	At1g28400	839738	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVA	O.I.	C.G.	H.G.
26.7	99.7	112.7	At2g40080	818596	ELF4 (EARLY FLOWERING 4)	Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.	O.I.	C.G.	H.G.
26.6	99.7	234.1	At1g74020	843740	SS2 (STRICTOSIDINE SYNTHASE 2)	Encodes AtSS-2 strictosidine synthase.	O.I.	C.G.	H.G.
26.2	99.7	15.8	At2g35730	818143	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:endomembrane system;P	O.I.	C.G.	H.G.
25.8	99.7	5.5	At1g04330	839548	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
25.4	99.6	91.6	At5g10830	830950	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
24.6	99.6	28.2	At3g07600	819951	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBMFV	O.I.	C.G.	H.G.
23.8	99.6	39.3	At1g69920	843328	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
23.5	99.6	148.9	At5g24570	832528	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.3	99.6	68.2	At5g05340	830416	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM	O.I.	C.G.	H.G.
22.9	99.6	18.5	At3g20860	821634	ATNEK5 (NIMA-RELATED KINASE5)	Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	O.I.	C.G.	H.G.
22.8	99.6	357.9	At5g65020	836626	ANNAT2 (Annexin Arabidopsis 2)	Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.	O.I.	C.G.	H.G.
22.7	99.6	94.6	At3g10930	820264	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
22.7	99.6	19.1	At4g21230	827872	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.

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GSM ID	GSM226541
Assay name	L11SB
GSE experiment	GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

Microarray experiments to specifically-expressed genes

GSM ID GSM226541 Assay name L11SB GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function

GSM ID GSM226541

Assay name L11SB

GSE experiment GSE8934: A high resolution organ expression map reveals novel expression patterns and predicts cellular function